Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 177 | 1.5e-52 | TIR domain |
| TIR_2 | PF13676 | 15 - 110 | 2.3e-10 | TIR domain |
| NB-ARC | PF00931 | 189 - 359 | 1.4e-09 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 425 - 492 | 8.6e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 608 - 626 | 9.3e-08 | Leucine Rich Repeat |
| LRR_3 | PF07725 | 745 - 764 | 6.8e-07 | Leucine Rich Repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 179, 729 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3195 |
| AatII | GACGTC | 1 cut(s) | 753 |
| AbsI | CCTCGAGG | 1 cut(s) | 1964 |
| AccBSI | CCGCTC | 1 cut(s) | 2736 |
| AccII | CGCG | 1 cut(s) | 714 |
| AciI | CCGC | 4 cut(s) | 112, 1817, 2736, 3084 |
| AclI | AACGTT | 2 cut(s) | 80, 3328 |
| AclWI | GGATC | 7 cut(s) | 144, 209, 262, 320, 408, 465, 2805 |
| AcoI | YGGCCR | 1 cut(s) | 183 |
| AcuI | CTGAAG | 3 cut(s) | 40, 498, 2876 |
| AcyI | GRCGYC | 1 cut(s) | 750 |
| AfaI | GTAC | 4 cut(s) | 664, 2522, 3135, 3294 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1031 |
| AflII | CTTAAG | 2 cut(s) | 905, 1043 |
| AflIII | ACRYGT | 2 cut(s) | 1573, 3320 |
| AjnI | CCWGG | 1 cut(s) | 2373 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1347, 1379, 1548, 1580, 1892, 1924 |
| Alw21I | GWGCWC | 1 cut(s) | 679 |
| Alw26I | GTCTC | 6 cut(s) | 757, 1151, 1898, 2374, 2789, 3071 |
| AlwI | GGATC | 7 cut(s) | 144, 209, 262, 320, 408, 465, 2805 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1559, 2810 |
| Ama87I | CYCGRG | 2 cut(s) | 1964, 2516 |
| AoxI | GGCC | 6 cut(s) | 183, 470, 1604, 1735, 2146, 2844 |
| ApeKI | GCWGC | 4 cut(s) | 156, 1021, 2739, 3105 |
| AseI | ATTAAT | 1 cut(s) | 2066 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1222, 1560, 3096 |
| AspA2I | CCTAGG | 1 cut(s) | 1208 |
| AspLEI | GCGC | 3 cut(s) | 106, 175, 716 |
| AspS9I | GGNCC | 2 cut(s) | 470, 1735 |
| AsuC2I | CCSGG | 1 cut(s) | 451 |
| AsuHPI | GGTGA | 7 cut(s) | 313, 560, 1207, 2011, 2422, 2902, 2941 |
| AsuII | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| AvaI | CYCGRG | 2 cut(s) | 1964, 2516 |
| AvrII | CCTAGG | 1 cut(s) | 1208 |
| AxyI | CCTNAGG | 1 cut(s) | 1731 |
| BanII | GRGCYC | 1 cut(s) | 679 |
| BbsI | GAAGAC | 1 cut(s) | 1127 |
| Bbv12I | GWGCWC | 1 cut(s) | 679 |
| BbvCI | CCTCAGC | 1 cut(s) | 86 |
| BbvI | GCAGC | 4 cut(s) | 143, 1008, 2726, 3092 |
| BceAI | ACGGC | 4 cut(s) | 157, 198, 334, 1591 |
| BciT130I | CCWGG | 1 cut(s) | 2375 |
| BclI | TGATCA | 2 cut(s) | 960, 2448 |
| BcnI | CCSGG | 1 cut(s) | 451 |
| BcoDI | GTCTC | 6 cut(s) | 757, 1151, 1898, 2374, 2789, 3071 |
| BfmI | CTRYAG | 1 cut(s) | 3223 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BfrI | CTTAAG | 2 cut(s) | 905, 1043 |
| BglII | AGATCT | 5 cut(s) | 1723, 1942, 2353, 2833, 3362 |
| BisI | GCNGC | 5 cut(s) | 157, 1022, 2737, 2740, 3106 |
| BlnI | CCTAGG | 1 cut(s) | 1208 |
| BlsI | GCNGC | 5 cut(s) | 158, 1023, 2738, 2741, 3107 |
| Bme1390I | CCNGG | 2 cut(s) | 451, 2375 |
| BmeT110I | CYCGRG | 2 cut(s) | 1964, 2516 |
| BmgT120I | GGNCC | 2 cut(s) | 470, 1735 |
| BmiI | GGNNCC | 1 cut(s) | 2329 |
| BmrFI | CCNGG | 2 cut(s) | 451, 2375 |
| BmrI | ACTGGG | 1 cut(s) | 1557 |
| BmsI | GCATC | 9 cut(s) | 153, 160, 1194, 1416, 2387, 2528, 2775, 3241, 3417 |
| BmuI | ACTGGG | 1 cut(s) | 1557 |
| BpiI | GAAGAC | 1 cut(s) | 1127 |
| BpmI | CTGGAG | 2 cut(s) | 2396, 2981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 86 |
| Bpu14I | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| BpuMI | CCSGG | 1 cut(s) | 451 |
| BsaAI | YACGTR | 3 cut(s) | 1400, 1574, 2165 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2401 |
| BsaHI | GRCGYC | 1 cut(s) | 750 |
| BsaI | GGTCTC | 1 cut(s) | 1151 |
| BsaJI | CCNNGG | 7 cut(s) | 450, 609, 912, 1208, 1476, 1584, 1885 |
| BsaWI | WCCGGW | 2 cut(s) | 307, 1408 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 833, 863 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1031 |
| Bse1I | ACTGG | 6 cut(s) | 700, 738, 1552, 2198, 2539, 2770 |
| Bse21I | CCTNAGG | 1 cut(s) | 1731 |
| Bse3DI | GCAATG | 1 cut(s) | 1302 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2401 |
| BseBI | CCWGG | 1 cut(s) | 2375 |
| BseDI | CCNNGG | 7 cut(s) | 450, 609, 912, 1208, 1476, 1584, 1885 |
| BseJI | GATNNNNATC | 1 cut(s) | 2401 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1031 |
| BseMI | GCAATG | 1 cut(s) | 1302 |
| BseNI | ACTGG | 6 cut(s) | 700, 738, 1552, 2198, 2539, 2770 |
| BseXI | GCAGC | 4 cut(s) | 143, 1008, 2726, 3092 |
| BseYI | CCCAGC | 1 cut(s) | 2560 |
| Bsh1236I | CGCG | 1 cut(s) | 714 |
| Bsh1285I | CGRYCG | 1 cut(s) | 112 |
| BshFI | GGCC | 6 cut(s) | 185, 472, 1606, 1737, 2148, 2846 |
| BsiEI | CGRYCG | 1 cut(s) | 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 679 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1964, 2516 |
| BsiSI | CCGG | 4 cut(s) | 31, 308, 450, 1409 |
| BslFI | GGGAC | 5 cut(s) | 654, 1193, 1375, 1564, 3428 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1031 |
| BsmAI | GTCTC | 6 cut(s) | 757, 1151, 1898, 2374, 2789, 3071 |
| BsmBI | CGTCTC | 1 cut(s) | 757 |
| BsmFI | GGGAC | 5 cut(s) | 654, 1193, 1375, 1564, 3428 |
| BsmI | GAATGC | 3 cut(s) | 2029, 2440, 2954 |
| BsnI | GGCC | 6 cut(s) | 185, 472, 1606, 1737, 2148, 2846 |
| Bso31I | GGTCTC | 1 cut(s) | 1151 |
| BsoBI | CYCGRG | 2 cut(s) | 1964, 2516 |
| Bsp119I | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| Bsp1286I | GDGCHC | 1 cut(s) | 679 |
| BspACI | CCGC | 4 cut(s) | 112, 1817, 2736, 3084 |
| BspANI | GGCC | 6 cut(s) | 185, 472, 1606, 1737, 2148, 2846 |
| BspFNI | CGCG | 1 cut(s) | 714 |
| BspHI | TCATGA | 1 cut(s) | 991 |
| BspLI | GGNNCC | 1 cut(s) | 2329 |
| BspPI | GGATC | 7 cut(s) | 144, 209, 262, 320, 408, 465, 2805 |
| BspQI | GCTCTTC | 1 cut(s) | 667 |
| BspT104I | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| BspTI | CTTAAG | 2 cut(s) | 905, 1043 |
| BspTNI | GGTCTC | 1 cut(s) | 1151 |
| BsrBI | CCGCTC | 1 cut(s) | 2736 |
| BsrDI | GCAATG | 1 cut(s) | 1302 |
| BsrI | ACTGG | 6 cut(s) | 700, 738, 1552, 2198, 2539, 2770 |
| BssECI | CCNNGG | 7 cut(s) | 450, 609, 912, 1208, 1476, 1584, 1885 |
| BssNI | GRCGYC | 1 cut(s) | 750 |
| BssT1I | CCWWGG | 5 cut(s) | 609, 912, 1208, 1476, 1885 |
| Bst2UI | CCWGG | 1 cut(s) | 2375 |
| Bst4CI | ACNGT | 6 cut(s) | 645, 1561, 1588, 1866, 3224, 3259 |
| Bst6I | CTCTTC | 1 cut(s) | 667 |
| BstACI | GRCGYC | 1 cut(s) | 750 |
| BstAFI | CTTAAG | 2 cut(s) | 905, 1043 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1435 |
| BstBAI | YACGTR | 3 cut(s) | 1400, 1574, 2165 |
| BstBI | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| BstC8I | GCNNGC | 2 cut(s) | 1643, 2744 |
| BstDSI | CCRYGG | 1 cut(s) | 1584 |
| BstFNI | CGCG | 1 cut(s) | 714 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 3 cut(s) | 106, 175, 716 |
| BstMAI | GTCTC | 6 cut(s) | 757, 1151, 1898, 2374, 2789, 3071 |
| BstMCI | CGRYCG | 1 cut(s) | 112 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1435, 2145, 2752 |
| BstNI | CCWGG | 1 cut(s) | 2375 |
| BstNSI | RCATGY | 5 cut(s) | 384, 1311, 1645, 2095, 3324 |
| BstSCI | CCNGG | 2 cut(s) | 449, 2373 |
| BstSFI | CTRYAG | 1 cut(s) | 3223 |
| BstSNI | TACGTA | 1 cut(s) | 1400 |
| BstUI | CGCG | 1 cut(s) | 714 |
| BstV1I | GCAGC | 4 cut(s) | 143, 1008, 2726, 3092 |
| BstV2I | GAAGAC | 1 cut(s) | 1127 |
| BstX2I | RGATCY | 9 cut(s) | 201, 267, 457, 1723, 1942, 2353, 2797, 2833, 3362 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2374, 2777 |
| BstYI | RGATCY | 9 cut(s) | 201, 267, 457, 1723, 1942, 2353, 2797, 2833, 3362 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1731 |
| BsuRI | GGCC | 6 cut(s) | 185, 472, 1606, 1737, 2148, 2846 |
| BtgI | CCRYGG | 1 cut(s) | 1584 |
| BtgZI | GCGATG | 2 cut(s) | 378, 695 |
| BtsIMutI | CAGTG | 7 cut(s) | 64, 745, 1156, 2205, 2532, 3019, 3136 |
| Cac8I | GCNNGC | 2 cut(s) | 1643, 2744 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1559, 2810 |
| CciI | TCATGA | 1 cut(s) | 991 |
| CfoI | GCGC | 3 cut(s) | 106, 175, 716 |
| Cfr13I | GGNCC | 2 cut(s) | 470, 1735 |
| Csp6I | GTAC | 4 cut(s) | 663, 2521, 3134, 3293 |
| CviQI | GTAC | 4 cut(s) | 663, 2521, 3134, 3293 |
| DraI | TTTAAA | 4 cut(s) | 373, 1170, 1327, 2076 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3195 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3195 |
| EaeI | YGGCCR | 1 cut(s) | 183 |
| Eam1104I | CTCTTC | 1 cut(s) | 667 |
| EarI | CTCTTC | 1 cut(s) | 667 |
| EciI | GGCGGA | 1 cut(s) | 1832 |
| Ecl136II | GAGCTC | 1 cut(s) | 677 |
| Eco105I | TACGTA | 1 cut(s) | 1400 |
| Eco130I | CCWWGG | 5 cut(s) | 609, 912, 1208, 1476, 1885 |
| Eco147I | AGGCCT | 1 cut(s) | 2148 |
| Eco24I | GRGCYC | 1 cut(s) | 679 |
| Eco31I | GGTCTC | 1 cut(s) | 1151 |
| Eco32I | GATATC | 1 cut(s) | 1053 |
| Eco53kI | GAGCTC | 1 cut(s) | 677 |
| Eco57I | CTGAAG | 3 cut(s) | 40, 498, 2876 |
| Eco81I | CCTNAGG | 1 cut(s) | 1731 |
| Eco88I | CYCGRG | 2 cut(s) | 1964, 2516 |
| EcoICRI | GAGCTC | 1 cut(s) | 677 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1735 |
| EcoRII | CCWGG | 1 cut(s) | 2373 |
| EcoRV | GATATC | 1 cut(s) | 1053 |
| EcoT14I | CCWWGG | 5 cut(s) | 609, 912, 1208, 1476, 1885 |
| EcoT38I | GRGCYC | 1 cut(s) | 679 |
| ErhI | CCWWGG | 5 cut(s) | 609, 912, 1208, 1476, 1885 |
| Esp3I | CGTCTC | 1 cut(s) | 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1335, 1367 |
| FaqI | GGGAC | 5 cut(s) | 654, 1193, 1375, 1564, 3428 |
| FbaI | TGATCA | 2 cut(s) | 960, 2448 |
| Fnu4HI | GCNGC | 5 cut(s) | 157, 1022, 2737, 2740, 3106 |
| FriOI | GRGCYC | 1 cut(s) | 679 |
| Fsp4HI | GCNGC | 5 cut(s) | 157, 1022, 2737, 2740, 3106 |
| GlaI | GCGC | 3 cut(s) | 105, 174, 715 |
| GluI | GCNGC | 5 cut(s) | 157, 1022, 2737, 2740, 3106 |
| GsaI | CCCAGC | 1 cut(s) | 2564 |
| GsuI | CTGGAG | 2 cut(s) | 2396, 2981 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 6 cut(s) | 185, 472, 1606, 1737, 2148, 2846 |
| HapII | CCGG | 4 cut(s) | 31, 308, 450, 1409 |
| HhaI | GCGC | 3 cut(s) | 106, 175, 716 |
| Hin1I | GRCGYC | 1 cut(s) | 750 |
| Hin6I | GCGC | 3 cut(s) | 104, 173, 714 |
| HinP1I | GCGC | 3 cut(s) | 104, 173, 714 |
| HincII | GTYRAC | 3 cut(s) | 689, 1831, 2983 |
| HindII | GTYRAC | 3 cut(s) | 689, 1831, 2983 |
| HindIII | AAGCTT | 2 cut(s) | 52, 1853 |
| HpaI | GTTAAC | 1 cut(s) | 1831 |
| HpaII | CCGG | 4 cut(s) | 31, 308, 450, 1409 |
| HphI | GGTGA | 7 cut(s) | 313, 560, 1207, 2011, 2422, 2902, 2941 |
| Hpy166II | GTNNAC | 7 cut(s) | 689, 1831, 2168, 2983, 3134, 3293, 3326 |
| Hpy8I | GTNNAC | 7 cut(s) | 689, 1831, 2168, 2983, 3134, 3293, 3326 |
| Hpy99I | CGWCG | 3 cut(s) | 44, 560, 3398 |
| HpyCH4III | ACNGT | 6 cut(s) | 645, 1561, 1588, 1866, 3224, 3259 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1435, 2145, 2752 |
| Hsp92I | GRCGYC | 1 cut(s) | 750 |
| HspAI | GCGC | 3 cut(s) | 104, 173, 714 |
| Ksp22I | TGATCA | 2 cut(s) | 960, 2448 |
| KspAI | GTTAAC | 1 cut(s) | 1831 |
| LguI | GCTCTTC | 1 cut(s) | 667 |
| LmnI | GCTCC | 3 cut(s) | 841, 1018, 2962 |
| Lsp1109I | GCAGC | 4 cut(s) | 143, 1008, 2726, 3092 |
| LweI | GCATC | 9 cut(s) | 153, 160, 1194, 1416, 2387, 2528, 2775, 3241, 3417 |
| MaeIII | GTNAC | 9 cut(s) | 278, 548, 746, 1334, 1534, 1999, 2261, 2410, 2890 |
| MbiI | CCGCTC | 1 cut(s) | 2736 |
| MfeI | CAATTG | 1 cut(s) | 2907 |
| MflI | RGATCY | 9 cut(s) | 201, 267, 457, 1723, 1942, 2353, 2797, 2833, 3362 |
| MhlI | GDGCHC | 1 cut(s) | 679 |
| MlyI | GAGTC | 2 cut(s) | 1070, 1263 |
| MmeI | TCCRAC | 5 cut(s) | 538, 1944, 2516, 2916, 2996 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1222, 1560, 3096 |
| MslI | CAYNNNNRTG | 1 cut(s) | 831 |
| MspCI | CTTAAG | 2 cut(s) | 905, 1043 |
| MspI | CCGG | 4 cut(s) | 31, 308, 450, 1409 |
| MspR9I | CCNGG | 2 cut(s) | 451, 2375 |
| MunI | CAATTG | 1 cut(s) | 2907 |
| Mva1269I | GAATGC | 3 cut(s) | 2029, 2440, 2954 |
| MvaI | CCWGG | 1 cut(s) | 2375 |
| MvnI | CGCG | 1 cut(s) | 714 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1435, 2145, 2752 |
| NciI | CCSGG | 1 cut(s) | 451 |
| NlaIV | GGNNCC | 1 cut(s) | 2329 |
| NmeAIII | GCCGAG | 1 cut(s) | 1144 |
| NmuCI | GTSAC | 7 cut(s) | 548, 746, 1534, 1999, 2261, 2410, 2890 |
| NspI | RCATGY | 5 cut(s) | 384, 1311, 1645, 2095, 3324 |
| NspV | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| PaeI | GCATGC | 1 cut(s) | 1645 |
| PaeR7I | CTCGAG | 2 cut(s) | 1964, 2516 |
| PagI | TCATGA | 1 cut(s) | 991 |
| PceI | AGGCCT | 1 cut(s) | 2148 |
| PciI | ACATGT | 1 cut(s) | 3320 |
| PciSI | GCTCTTC | 1 cut(s) | 667 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 105, 1604 |
| PctI | GAATGC | 3 cut(s) | 2029, 2440, 2954 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1222, 1560, 3096 |
| PflFI | GACNNNGTC | 1 cut(s) | 554 |
| PkrI | GCNGC | 5 cut(s) | 158, 1023, 2738, 2741, 3107 |
| PleI | GAGTC | 2 cut(s) | 1070, 1262 |
| PpsI | GAGTC | 2 cut(s) | 1070, 1262 |
| Ppu21I | YACGTR | 3 cut(s) | 1400, 1574, 2165 |
| PscI | ACATGT | 1 cut(s) | 3320 |
| PshBI | ATTAAT | 1 cut(s) | 2066 |
| PsiI | TTATAA | 2 cut(s) | 179, 729 |
| Psp124BI | GAGCTC | 1 cut(s) | 679 |
| Psp1406I | AACGTT | 2 cut(s) | 80, 3328 |
| Psp6I | CCWGG | 1 cut(s) | 2373 |
| PspFI | CCCAGC | 1 cut(s) | 2560 |
| PspGI | CCWGG | 1 cut(s) | 2373 |
| PspN4I | GGNNCC | 1 cut(s) | 2329 |
| PspPI | GGNCC | 2 cut(s) | 470, 1735 |
| PspXI | VCTCGAGB | 1 cut(s) | 1964 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1559, 2810 |
| PsuI | RGATCY | 9 cut(s) | 201, 267, 457, 1723, 1942, 2353, 2797, 2833, 3362 |
| PsyI | GACNNNGTC | 1 cut(s) | 554 |
| RsaI | GTAC | 4 cut(s) | 664, 2522, 3135, 3294 |
| RsaNI | GTAC | 4 cut(s) | 663, 2521, 3134, 3293 |
| RseI | CAYNNNNRTG | 1 cut(s) | 831 |
| SacI | GAGCTC | 1 cut(s) | 679 |
| SapI | GCTCTTC | 1 cut(s) | 667 |
| SatI | GCNGC | 5 cut(s) | 157, 1022, 2737, 2740, 3106 |
| Sau96I | GGNCC | 2 cut(s) | 470, 1735 |
| SchI | GAGTC | 2 cut(s) | 1070, 1263 |
| ScrFI | CCNGG | 2 cut(s) | 451, 2375 |
| SduI | GDGCHC | 1 cut(s) | 679 |
| SfaNI | GCATC | 9 cut(s) | 153, 160, 1194, 1416, 2387, 2528, 2775, 3241, 3417 |
| SfcI | CTRYAG | 1 cut(s) | 3223 |
| Sfr274I | CTCGAG | 2 cut(s) | 1964, 2516 |
| SfuI | TTCGAA | 3 cut(s) | 515, 1216, 2840 |
| SlaI | CTCGAG | 2 cut(s) | 1964, 2516 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 831 |
| SnaBI | TACGTA | 1 cut(s) | 1400 |
| SphI | GCATGC | 1 cut(s) | 1645 |
| SseBI | AGGCCT | 1 cut(s) | 2148 |
| SsiI | CCGC | 4 cut(s) | 112, 1817, 2736, 3084 |
| SspI | AATATT | 1 cut(s) | 2336 |
| SstI | GAGCTC | 1 cut(s) | 679 |
| StuI | AGGCCT | 1 cut(s) | 2148 |
| StyD4I | CCNGG | 2 cut(s) | 449, 2373 |
| StyI | CCWWGG | 5 cut(s) | 609, 912, 1208, 1476, 1885 |
| TaaI | ACNGT | 6 cut(s) | 645, 1561, 1588, 1866, 3224, 3259 |
| TaqII | GACCGA | 1 cut(s) | 1553 |
| TatI | WGTACW | 1 cut(s) | 3133 |
| TauI | GCSGC | 1 cut(s) | 2739 |
| TscAI | CASTG | 7 cut(s) | 64, 745, 1156, 2205, 2539, 3019, 3136 |
| TseFI | GTSAC | 7 cut(s) | 548, 746, 1534, 1999, 2261, 2410, 2890 |
| TseI | GCWGC | 4 cut(s) | 156, 1021, 2739, 3105 |
| Tsp45I | GTSAC | 7 cut(s) | 548, 746, 1534, 1999, 2261, 2410, 2890 |
| TspRI | CASTG | 7 cut(s) | 64, 745, 1156, 2205, 2539, 3019, 3136 |
| Tth111I | GACNNNGTC | 1 cut(s) | 554 |
| Vha464I | CTTAAG | 2 cut(s) | 905, 1043 |
| VspI | ATTAAT | 1 cut(s) | 2066 |
| XbaI | TCTAGA | 3 cut(s) | 895, 1660, 3073 |
| XceI | RCATGY | 5 cut(s) | 384, 1311, 1645, 2095, 3324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1064 |
| XhoI | CTCGAG | 2 cut(s) | 1964, 2516 |
| XmaJI | CCTAGG | 1 cut(s) | 1208 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1222, 1560, 3096 |
| ZraI | GACGTC | 1 cut(s) | 751 |