AT4G16957

TIR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002336
Physical Location & Seq
Reverse (-)
9544790 .. 9547340
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16957.1

Sequence Viewer

Length: 765 bp
ATGGTTTTACCAGGTGGAGAAGTGCCTGCATATTTCAAGCATCGAGCATATGGAAATTCCGTAAATATCACTTTACCTCGGAGATCTCTCTCTCACAAATTTTTGCGATTCAATGCTTGTGTAGTGGTTGAACCTCAAACCGATTCTTATGGGAGTGTGTATGTATACTTCCAATACAAAGGCGAACATTATATCCATACAATAGCTACTGATATGACACTGATGTGTAAGACGGATCATCTGGTTTTGTGTTCCTTCAAGTTCCGGCAGTTTAAAAATACTCTATATCCAAAGGTAAAGGTCTTGGATAATGTGGAATTCAAGTTTAAAGGGAGGAGGATCAAAGGATGCGGCGTACAACTCCTGCATGTGTCTCCATATCCGGATGATAGTGATGGAAGCTCTAAAGCAGAGTACAACCAACAGTCTGGAGAAAAATGTGATGCTGTAGAGACTGAGAGTAGTAGCAAGAAGCGGATGCGGATGACATTAGGAAACTCTGAAGAAGATTTCAACTTACCCTGTGGCCAAACAGTAACAGACACAGGATTGACCGCTCCAAATCTGGAGCTTCCATTAGGGCGGGGAGAATCGTCATCAATTTCATATCCATGTCTGGAGGGTGAAGCTTTCTCTGTTGATTCCATGATAACTAAGCGACAAGCTAAAGAAATTCCCATCGCGCATAGGGACGAAGATTCTGAGGCATCATGGTCATCAGGCTCATCAGGCTCATCAAGCTCTTCGTCGCTGGTGCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

254

Amino Acids

28.23

Weight (kDa)

6.66

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 3 - 123 6e-13 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 683
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 5 cut(s) 351, 475, 481, 555, 583
AclWI GGATC 2 cut(s) 243, 347
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 4 cut(s) 55, 98, 317, 672
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 2 cut(s) 357, 416
AgsI TTSAA 6 cut(s) 37, 112, 131, 259, 322, 514
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 223
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 6 cut(s) 206, 402, 571, 629, 665, 741
AluI AGCT 6 cut(s) 206, 402, 571, 629, 665, 741
Alw26I GTCTC 2 cut(s) 378, 446
AlwI GGATC 2 cut(s) 243, 347
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 1 cut(s) 526
ApoI RAATTY 4 cut(s) 55, 98, 317, 672
AspLEI GCGC 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 635
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BccI CCATC 2 cut(s) 389, 686
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 378, 446
BfmI CTRYAG 1 cut(s) 447
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 5 cut(s) 49, 338, 433, 468, 716
BpmI CTGGAG 3 cut(s) 450, 587, 638
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 4 cut(s) 353, 391, 483, 489
BseMII CTCAG 2 cut(s) 447, 693
BseRI GAGGAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 754
BsiSI CCGG 2 cut(s) 265, 383
BslFI GGGAC 1 cut(s) 704
BsmAI GTCTC 2 cut(s) 378, 446
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 1 cut(s) 528
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 83, 235, 339
BspACI CCGC 5 cut(s) 351, 475, 481, 555, 583
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 448, 694
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 2 cut(s) 243, 347
BspQI GCTCTTC 1 cut(s) 748
BspT107I GGYRCC 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 83, 235, 339
BssNAI GTATAC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 426, 535
Bst6I CTCTTC 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 3 cut(s) 456, 654, 702
BstF5I GGATG 4 cut(s) 353, 391, 483, 489
BstFNI CGCG 1 cut(s) 683
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 3 cut(s) 86, 238, 342
BstMAI GTCTC 2 cut(s) 378, 446
BstMBI GATC 3 cut(s) 83, 235, 339
BstMWI GCNNNNNNNGC 2 cut(s) 729, 738
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 664
BtsCI GGATG 4 cut(s) 353, 391, 483, 489
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 685
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 356, 415
CviAII CATG 4 cut(s) 368, 612, 646, 711
CviJI RGCY 9 cut(s) 206, 402, 528, 571, 629, 665, 723, 732, 741
CviKI_1 RGCY 9 cut(s) 206, 402, 528, 571, 629, 665, 723, 732, 741
CviQI GTAC 2 cut(s) 356, 415
DdeI CTNAG 3 cut(s) 456, 654, 702
DpnI GATC 3 cut(s) 85, 237, 341
DpnII GATC 3 cut(s) 83, 235, 339
DraI TTTAAA 2 cut(s) 274, 328
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 4 cut(s) 371, 615, 649, 714
FaqI GGGAC 1 cut(s) 704
FatI CATG 4 cut(s) 367, 611, 645, 710
FauI CCCGC 1 cut(s) 576
FauNDI CATATG 1 cut(s) 49
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 4 cut(s) 360, 398, 490, 496
Fsp4HI GCNGC 1 cut(s) 352
GlaI GCGC 1 cut(s) 684
GluI GCNGC 1 cut(s) 352
GsuI CTGGAG 3 cut(s) 450, 587, 638
HaeIII GGCC 1 cut(s) 528
HapII CCGG 2 cut(s) 265, 383
HhaI GCGC 1 cut(s) 685
Hin1II CATG 4 cut(s) 371, 615, 649, 714
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 5 cut(s) 108, 143, 590, 641, 698
HpaII CCGG 2 cut(s) 265, 383
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 81, 502, 703
Hpy188III TCNNGA 4 cut(s) 383, 429, 566, 617
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 751
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 426, 535
HpyCH4V TGCA 2 cut(s) 29, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 729, 738
HpyF3I CTNAG 3 cut(s) 456, 654, 702
Hsp92II CATG 4 cut(s) 371, 615, 649, 714
HspAI GCGC 1 cut(s) 683
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 83, 235, 339
LguI GCTCTTC 1 cut(s) 748
LmnI GCTCC 2 cut(s) 562, 568
LweI GCATC 5 cut(s) 49, 338, 433, 468, 716
MabI ACCWGGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 85, 237, 341
MbiI CCGCTC 1 cut(s) 557
MboI GATC 3 cut(s) 83, 235, 339
MboII GAAGA 4 cut(s) 515, 518, 707, 735
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 55, 98, 317, 600, 672
MluNI TGGCCA 1 cut(s) 528
MnlI CCTC 6 cut(s) 87, 144, 327, 330, 613, 697
Mox20I TGGCCA 1 cut(s) 528
MroI TCCGGA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 528
MseI TTAA 3 cut(s) 273, 327, 763
MslI CAYNNNNRTG 2 cut(s) 223, 610
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 2 cut(s) 265, 383
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 2 cut(s) 729, 738
NdeI CATATG 1 cut(s) 49
NdeII GATC 3 cut(s) 83, 235, 339
NlaIII CATG 4 cut(s) 371, 615, 649, 714
NlaIV GGNNCC 1 cut(s) 756
NspI RCATGY 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 748
PfeI GAWTC 5 cut(s) 108, 143, 590, 641, 698
PkrI GCNGC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 756
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 357, 416
RsaNI GTAC 2 cut(s) 356, 415
RseI CAYNNNNRTG 2 cut(s) 223, 610
SapI GCTCTTC 1 cut(s) 748
SaqAI TTAA 3 cut(s) 273, 327, 763
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 3 cut(s) 83, 235, 339
ScrFI CCNGG 1 cut(s) 12
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 5 cut(s) 49, 338, 433, 468, 716
SfcI CTRYAG 1 cut(s) 447
SmiMI CAYNNNNRTG 2 cut(s) 223, 610
Sse9I AATT 5 cut(s) 55, 98, 317, 600, 672
SsiI CCGC 5 cut(s) 351, 475, 481, 555, 583
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 426, 535
TaqI TCGA 1 cut(s) 43
TasI AATT 5 cut(s) 55, 98, 317, 600, 672
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 5 cut(s) 108, 143, 590, 641, 698
Tru1I TTAA 3 cut(s) 273, 327, 763
Tru9I TTAA 3 cut(s) 273, 327, 763
TscAI CASTG 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 594
TspGWI ACGGA 2 cut(s) 49, 248
TspRI CASTG 1 cut(s) 225
XapI RAATTY 4 cut(s) 55, 98, 317, 672
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.