AT4G16880

regulation of response to stimulus

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9495983 .. 9497313
1331 bp
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UTR
Exon/CDS
Intron
AT4G16880.1

Sequence Viewer

Length: 462 bp
ATGGAGGATAGTGACCTTGAGAAGCTGTGGAATGGAACTCAGTTACTTGGAAGCCTAAAGAAGATGATTCTGCGTAATTCCAAATATTTGAAAGAAATTCCAGATCTTTCTTTAGCCACAAACCTCGAGAGACTAGATCTTTGTAAATGCGAAGTGCTAGAAAGTTTTCCAACTCCTCTCAACTCGGAATCTCTTGAGTACCTCAATCTCCTACGATGCCCCAAGTTGAGAAATTTCCCTGAGATTATTATGCACAGTTTCAGAGGAGAAATTGACATCGAGGTAGCAGATTGTTTATGGAACAAGAATCTCCCTGGACTCGGTTATCTTGATTGCCTTAGGAGATGTAATCCAAGTAAATTTCGCCCAGAACATCTCAAAGACCTCACAGTGAGATGTAACAACAAGCTTGAGAAGCTATGGGAAGGCGTCCAGGTAATTCATACGTATATTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.92

Weight (kDa)

6.31

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 96, 232, 359
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 2 cut(s) 313, 432
AluBI AGCT 3 cut(s) 25, 409, 418
AluI AGCT 3 cut(s) 25, 409, 418
Alw26I GTCTC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 125
ApoI RAATTY 3 cut(s) 96, 232, 359
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 315, 434
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 2 cut(s) 134, 158
BglII AGATCT 2 cut(s) 103, 136
Bme1390I CCNGG 2 cut(s) 315, 434
BmeT110I CYCGRG 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 315, 434
BmsI GCATC 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 38, 215, 431
BsaAI YACGTR 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse21I CCTNAGG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 315, 434
BseDI CCNNGG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 53, 231
BseRI GAGGAG 2 cut(s) 165, 279
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 125
Bsp143I GATC 2 cut(s) 103, 136
BspCNI CTCAG 2 cut(s) 52, 232
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 103, 136
BssNI GRCGYC 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 315, 434
Bst4CI ACNGT 2 cut(s) 257, 391
BstACI GRCGYC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 39, 240, 338
BstKTI GATC 2 cut(s) 106, 139
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 103, 136
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 2 cut(s) 315, 434
BstSCI CCNGG 2 cut(s) 313, 432
BstSNI TACGTA 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 103, 136
BstYI RGATCY 2 cut(s) 103, 136
Bsu36I CCTNAGG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 396
CseI GACGC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 199
CviJI RGCY 5 cut(s) 25, 54, 116, 409, 418
CviKI_1 RGCY 5 cut(s) 25, 54, 116, 409, 418
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 3 cut(s) 39, 240, 338
DpnI GATC 2 cut(s) 105, 138
DpnII GATC 2 cut(s) 103, 136
Eco105I TACGTA 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 313, 432
FaiI YATR 7 cut(s) 251, 298, 421, 444, 450, 455, 457
FspBI CTAG 2 cut(s) 134, 158
HgaI GACGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 4 cut(s) 67, 188, 307, 318
Hpy188I TCNGA 2 cut(s) 187, 263
Hpy188III TCNNGA 4 cut(s) 101, 127, 194, 329
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 257, 391
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 3 cut(s) 39, 240, 338
HpySE526I ACGT 1 cut(s) 446
Hsp92I GRCGYC 1 cut(s) 429
Kzo9I GATC 2 cut(s) 103, 136
LpnPI CCDG 7 cut(s) 114, 252, 300, 327, 381, 419, 446
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 134, 158
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 3 cut(s) 11, 42, 398
MalI GATC 2 cut(s) 105, 138
MboI GATC 2 cut(s) 103, 136
MboII GAAGA 1 cut(s) 73
MflI RGATCY 2 cut(s) 103, 136
MluCI AATT 6 cut(s) 76, 96, 232, 270, 359, 438
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 134, 186, 212, 257, 274, 395
MroXI GAANNNNTTC 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 315, 434
MvaI CCWGG 2 cut(s) 315, 434
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 2 cut(s) 103, 136
NmuCI GTSAC 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 67, 188, 307
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Ppu21I YACGTR 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 313, 432
PspGI CCWGG 2 cut(s) 313, 432
PsuI RGATCY 2 cut(s) 103, 136
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 103, 136
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 315, 434
SfaNI GCATC 1 cut(s) 206
Sfr274I CTCGAG 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 4 cut(s) 17, 125, 194, 410
SmoI CTYRAG 4 cut(s) 17, 125, 194, 410
SnaBI TACGTA 1 cut(s) 447
Sse9I AATT 6 cut(s) 76, 96, 232, 270, 359, 438
SspI AATATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 134, 158
StyD4I CCNGG 2 cut(s) 313, 432
TaaI ACNGT 2 cut(s) 257, 391
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 126, 279
TasI AATT 6 cut(s) 76, 96, 232, 270, 359, 438
TfiI GAWTC 3 cut(s) 67, 188, 307
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 431
TspRI CASTG 1 cut(s) 396
XapI RAATTY 3 cut(s) 96, 232, 359
XhoI CTCGAG 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 134, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.