Disease resistance protein (TIR-NBS-LRR class)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9511859 .. 9516688
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16900.1

Sequence Viewer

Length: 3123 bp
ATGGCGGCGGCTTCTTCTTCTTGCAGCCGGAGATACGATGTTTTCCCAAGCTTCAGTGGGGTAGATGTTCGCAAGACGTTCCTCAGCAATCTACTCGAGGCGTTCGACCGCAGATCAATCAATACATTCATGGATCATGGCATCGAACGAAGCCGTACAATAGCCCCTGAGCTAATATCAGCGATTAGAGAAGCAAGGATCTCAATCGTGATCTTCTCTAAGAACTATGCTTCTTCCACTTGGTGCTTGGATGAATTGGTTGAGATCCACAATCGCTTAAATGATTGGGGTCAATTGGTGATTTCAGTTTTTTACGACGTTGATCCTTCGGAAGTTAGAAAACAGACCGGCGAATTTGGCGATGTTTTTAAAAAGACATGCGAGGACAAAGAAGAGGATCAGAAACAAAGATGGATGCAAGCTCTAGTAGACATAACAAATATAGCCGGAGAAGATCTTCGAAACGGGCCTAGTGAAGCAGCCATGGTTGTAAAGATAGCTAATGATGTTTCGAATAAGCTTATTTCACCATCGAATTCTTTTGGCGATTTCGTCGGAATTGAAGCTCATTTAGAGGCAATGAATTCAATATTGTGCTTGGAATCCAAGGAAGCTAGAATGGTTGGGATTTGGGGGCCTTCAGGGATTGGTAAGAGTACCATAGGAAAAGCTCTATACAGTCAACTCTTTTGCCAATTCCACTTTCACGCTTTCGTACCTCACGTCTATAGCATGAAGTCTGAATGGGAAGAAATATTTCTGTCAAAAATTCTTGGTAAGGATATAAAGATAGGAGGGAAGTTAGGTGTAGTGGAGCAAATGTTAAATCAGAAGAAAGTTCTTATCGTTCTTGATGATGTGGATGATCCAGAGTTTCTTAAGACCTTGGTGGGGGAAACTAAATGGTTTGGACCTGGAAGCAGAATTATTGTGATCACTCAAGATATGCAACTTCTTAAGGCTCATGATATTGACCTTTTATATGAGGTGAAGTTCCCATCTCTAGATCTTGCTCTTAAGATGTTATGCCGATCTGCTTTTGGGGAAAACTCTCCACCTGATGATTTTAAGGCACTAGCATTTGAAGTTGCAGTGCTTGCCGGTAATCTTCCTTTGGGTCTCAGTGTCCTTGGTTCGTCTTTAAAACGAAGGACCAAAGAAGAGTGGATGGAGATGATGCCTAGGTTCCGAAATGGTTTGAACGGAGATATTATGAAAACATTAAGAGTCAGCTACGATAGATTACATCAAAAAGATCAAGATATGTTCCTTTACATCGCGTGTTTATTCAATGGTTTTGAAGTCAGTTACGTCAACGATTTACTTGAAGATAATGTTGGGGTTACAATGTTGGTTGAGAAGTCCCTCATACGTATTACACCGGATGGAGATATAGAGATGCACAATTTGCTAGAGAAATTGGGTATAGAAATTGATCGTGCAAAGTCCAAGGAAACAGTTCTTGGAATACGTTTCTGCACAGCTTTCCGATCAAAAGAGCTATTACCAATAGATGAAAAATCGTTCCAAGGCATGCGTAATCTCCAATGTCTATCAGTTACTGGGGATTATATGGATCTACCTCAGAGCCTCGTTTATTTGCCCCCTAAACTCAGATTGCTAGACTGGGATAGGTGTCCATTGAAATGTTTGCCTTATAGTTTTAAGGCGGATTACCTCATTCAACTCACAATGATGGGAAGTAAGCTTGAGAAGCTGTGGGAAGGAACTGTGCCACTTGGAAGCCTCAAGAGGATGAATATGCATGGTTCCAGATATTTGAGAGAAATTTCAGATCTTTCTAATGCCAGAAACCTCGAGGAATTAAATCTTTCGGAATGCAGATCTTTGGTGACACTTTCTTCCTCGATTCAGAATGCCATTAAACTGATCTATTTAGATATGAGGGGTTGCACAAAGCTAGAGAGTTTTCCAACTCATCTCAACTTGGAATCTCTTGAGTACCTCGAAAATTGTATATGGAACAAGAATCTCCCTGGTCTTGATTATCTCGCCTGCCTTGTGAGATGTATGCCATGTGAATTTCGCCCAAATGATCTGGTTCGTCTCATAGTGAGAGGCAACCAAATGCTTGAGAAGCTATGGGAAGGCGTCCAGTCGCTTGCAAGTCTCGTGGAGATGGATATGTCAGAATGTGGAAACCTGACAGAAATTCCAGATCTTTCAAAGGCCACTAATCTGGTGAATTTATATCTCTCTAATTGCAAAAGTTTGGTGACAGTTCCTTCTACAATTGGGAATCTCCAAAAATTGGTGAGGTTGGAAATGAAAGAATGCACAGGGCTGGAGGTTCTTCCAACCGATGTCAACTTGTCATCTCTTAAAATGCTTGATCTGAGTGGTTGCTCAAGTTTGAGAACTTTTCCTCTGATTTCAAAGAGTATCAAATGGCTCTATCTGGAAAACACCGCTATTGAAGAAGTTCCCTGCTGCATTGAAAATTTCTCGTGGCTCACTGTACTTATGATGTATTGTTGCAAGAGGTTGAAAAACATCTCGCCAAACATTTTCAGACTGACAATTCTTAAGCTCGTCGACTTTACAGAATGTAGAGGTGTCAACGTGGCGATGAGTGATGCCAGTGTGGAAGATCACTCTTCTTATATACCATTATATGAAAACATTGAGTATACTCGTCATCGTTTCTGGGAAAACCTTAACCACAAACATTTGGCCTGTAGGGCAGGTGGAGTCTCGGACAAGTGGGAAGGAGTTGGCCATAAGCTCGGACAAAGGGAAATCATGCGGGCTAAGCTAGGATCTCCACCTCGAGCAGCTGGGCGAGTGACGGTTGAGCTCGAGGCAGCTGGTCGACTGTCTGACCAGCTGGGCGGTTACCCGGACGGTTACTTGGGCGGTTACGGTCGAACGGGTGCTCGCCCAAAGGGGAGGGTGCCCAAGACCTTTAGAGGCACCAGAACACACAGAAAATACCGGAAACTCACTATTAAACTCTCGTCCTTTCGGGAGAATAAATCGTCGGAGGAAATCGGTAGTCGGACTGTGACCGGCAAGGAAGAAGAAGGGTCGGATCGACCGAACATCGTGAAGGAAGGTAAGGGAAACCTAGACCTCGAGTCTAAGGATTCTAGAATACGTTAA

Protein Analysis

1040

Amino Acids

117.66

Weight (kDa)

6.67

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 12 - 181 5e-52 TIR domain
TIR_2 PF13676 14 - 125 2.2e-08 TIR domain
NB-ARC PF00931 188 - 348 1.3e-10 NB-ARC domain
WHD_ROQ1 PF23282 417 - 483 1e-12 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2696
AbsI CCTCGAGG 1 cut(s) 1817
Acc36I ACCTGC 1 cut(s) 2696
AccB1I GGYRCC 2 cut(s) 2914, 2933
AccB7I CCANNNNNTGG 1 cut(s) 2272
AccI GTMKAC 4 cut(s) 429, 2556, 2651, 2833
AccII CGCG 1 cut(s) 1280
AciI CCGC 8 cut(s) 5, 8, 109, 1670, 2430, 2767, 2853, 2877
AclWI GGATC 9 cut(s) 141, 206, 259, 317, 405, 860, 1584, 2788, 3060
AcoI YGGCCR 1 cut(s) 2737
AcsI RAATTY 9 cut(s) 353, 535, 583, 768, 1788, 2042, 2172, 2206, 2461
AcuI CTGAAG 2 cut(s) 37, 624
AcyI GRCGYC 1 cut(s) 2112
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 5 cut(s) 157, 658, 717, 1964, 2481
AfiI CCNNNNNNNGG 2 cut(s) 891, 2272
AflII CTTAAG 4 cut(s) 878, 956, 1016, 2546
AhdI GACNNNNNGTC 1 cut(s) 3097
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 2 cut(s) 913, 1996
AjuI GAANNNNNNNTTGG 6 cut(s) 687, 719, 1320, 1352, 1446, 1478
Alw21I GWGCWC 2 cut(s) 2820, 2899
Alw26I GTCTC 4 cut(s) 1124, 2072, 2135, 2719
AlwI GGATC 9 cut(s) 141, 206, 259, 317, 405, 860, 1584, 2788, 3060
AlwNI CAGNNNCTG 1 cut(s) 1562
Ama87I CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
AoxI GGCC 5 cut(s) 467, 635, 2190, 2694, 2737
ApeKI GCWGC 5 cut(s) 24, 479, 2451, 2795, 2825
ApoI RAATTY 9 cut(s) 353, 535, 583, 768, 1788, 2042, 2172, 2206, 2461
Asp700I GAANNNNTTC 4 cut(s) 456, 756, 1458, 2442
AspA2I CCTAGG 1 cut(s) 1181
AspS9I GGNCC 4 cut(s) 467, 635, 911, 1152
AsuC2I CCSGG 1 cut(s) 2861
AsuHPI GGTGA 7 cut(s) 310, 519, 1000, 1864, 2215, 2248, 2287
AsuII TTCGAA 2 cut(s) 460, 512
AvaI CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
AvaII GGWCC 2 cut(s) 911, 1152
AvrII CCTAGG 1 cut(s) 1181
BaeGI GKGCMC 1 cut(s) 2919
BalI TGGCCA 1 cut(s) 2739
BanI GGYRCC 2 cut(s) 2914, 2933
BanII GRGCYC 1 cut(s) 2820
BauI CACGAG 2 cut(s) 2132, 2467
Bbv12I GWGCWC 2 cut(s) 2820, 2899
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 36, 491, 2438, 2807, 2837
BccI CCATC 7 cut(s) 405, 538, 1006, 1162, 1379, 1690, 2134
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 2 cut(s) 915, 1998
BclI TGATCA 1 cut(s) 933
BcnI CCSGG 1 cut(s) 2861
BcoDI GTCTC 4 cut(s) 1124, 2072, 2135, 2719
BfmI CTRYAG 2 cut(s) 727, 2698
BfrI CTTAAG 4 cut(s) 878, 956, 1016, 2546
BfuAI ACCTGC 1 cut(s) 2696
BglI GCCNNNNNGGC 1 cut(s) 2702
BglII AGATCT 5 cut(s) 454, 1006, 1795, 1844, 2179
BisI GCNGC 7 cut(s) 6, 9, 25, 480, 2452, 2796, 2826
BlnI CCTAGG 1 cut(s) 1181
BlpI GCTNAGC 1 cut(s) 2772
BlsI GCNGC 7 cut(s) 7, 10, 26, 481, 2453, 2797, 2827
Bme1390I CCNGG 3 cut(s) 915, 1998, 2861
Bme18I GGWCC 2 cut(s) 911, 1152
BmeRI GACNNNNNGTC 1 cut(s) 3097
BmeT110I CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 4 cut(s) 467, 635, 911, 1152
BmiI GGNNCC 5 cut(s) 636, 1187, 1771, 2916, 2935
BmrFI CCNGG 3 cut(s) 915, 1998, 2861
BmrI ACTGGG 2 cut(s) 1572, 1636
BmsI GCATC 5 cut(s) 150, 405, 1167, 1389, 2587
BmuI ACTGGG 2 cut(s) 1572, 1636
BpmI CTGGAG 1 cut(s) 2327
Bpu10I CCTNAGC 2 cut(s) 83, 168
Bpu1102I GCTNAGC 1 cut(s) 2772
Bpu14I TTCGAA 2 cut(s) 460, 512
BpuEI CTTGAG 6 cut(s) 924, 1730, 1733, 1979, 2114, 2353
BpuMI CCSGG 1 cut(s) 2861
BsaAI YACGTR 1 cut(s) 1373
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 2112
BsaI GGTCTC 1 cut(s) 1124
BsaJI CCNNGG 8 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528, 1996
BsaWI WCCGGW 2 cut(s) 1381, 2955
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 891, 2272
Bse118I RCCGGY 3 cut(s) 347, 1100, 3029
Bse1I ACTGG 4 cut(s) 1567, 1631, 2116, 2601
Bse3DI GCAATG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 915, 1998
BseDI CCNNGG 8 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528, 1996
BseGI GGATG 6 cut(s) 256, 420, 868, 1173, 1390, 1761
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 891, 2272
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 6 cut(s) 97, 159, 1135, 1598, 1627, 2348
BseNI ACTGG 4 cut(s) 1567, 1631, 2116, 2601
BseSI GKGCMC 1 cut(s) 2919
BseXI GCAGC 5 cut(s) 36, 491, 2438, 2807, 2837
BseYI CCCAGC 2 cut(s) 2798, 2848
BsgI GTGCAG 1 cut(s) 1462
Bsh1236I CGCG 1 cut(s) 1280
Bsh1285I CGRYCG 3 cut(s) 109, 2887, 3059
BshFI GGCC 5 cut(s) 469, 637, 2192, 2696, 2739
BshNI GGYRCC 2 cut(s) 2914, 2933
BsiEI CGRYCG 3 cut(s) 109, 2887, 3059
BsiHKAI GWGCWC 2 cut(s) 2820, 2899
BsiHKCI CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
BsiSI CCGG 8 cut(s) 28, 348, 447, 1101, 1382, 2861, 2956, 3030
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 2 cut(s) 891, 2272
BsmAI GTCTC 4 cut(s) 1124, 2072, 2135, 2719
BsmBI CGTCTC 1 cut(s) 2072
BsmFI GGGAC 1 cut(s) 1348
BsmI GAATGC 3 cut(s) 1844, 1882, 2300
BsnI GGCC 5 cut(s) 469, 637, 2192, 2696, 2739
Bso31I GGTCTC 1 cut(s) 1124
BsoBI CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
Bsp119I TTCGAA 2 cut(s) 460, 512
Bsp1286I GDGCHC 3 cut(s) 2820, 2899, 2919
Bsp1720I GCTNAGC 1 cut(s) 2772
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 8 cut(s) 5, 8, 109, 1670, 2430, 2767, 2853, 2877
BspANI GGCC 5 cut(s) 469, 637, 2192, 2696, 2739
BspCNI CTCAG 6 cut(s) 96, 160, 1134, 1597, 1626, 2349
BspFNI CGCG 1 cut(s) 1280
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 5 cut(s) 636, 1187, 1771, 2916, 2935
BspMI ACCTGC 1 cut(s) 2696
BspPI GGATC 9 cut(s) 141, 206, 259, 317, 405, 860, 1584, 2788, 3060
BspT104I TTCGAA 2 cut(s) 460, 512
BspT107I GGYRCC 2 cut(s) 2914, 2933
BspTI CTTAAG 4 cut(s) 878, 956, 1016, 2546
BspTNI GGTCTC 1 cut(s) 1124
BsrDI GCAATG 1 cut(s) 585
BsrFI RCCGGY 3 cut(s) 347, 1100, 3029
BsrI ACTGG 4 cut(s) 1567, 1631, 2116, 2601
BssAI RCCGGY 3 cut(s) 347, 1100, 3029
BssECI CCNNGG 8 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528, 1996
BssNAI GTATAC 1 cut(s) 2652
BssNI GRCGYC 1 cut(s) 2112
BssSI CACGAG 2 cut(s) 2132, 2467
BssT1I CCWWGG 7 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528
Bst1107I GTATAC 1 cut(s) 2652
Bst2BI CACGAG 2 cut(s) 2132, 2467
Bst2UI CCWGG 2 cut(s) 915, 1998
Bst6I CTCTTC 3 cut(s) 387, 1155, 2623
BstACI GRCGYC 1 cut(s) 2112
BstAFI CTTAAG 4 cut(s) 878, 956, 1016, 2546
BstAPI GCANNNNNTGC 2 cut(s) 1097, 1408
BstBAI YACGTR 1 cut(s) 1373
BstBI TTCGAA 2 cut(s) 460, 512
BstC8I GCNNGC 7 cut(s) 420, 1098, 1535, 2017, 2124, 2769, 2899
BstDEI CTNAG 9 cut(s) 83, 168, 219, 1121, 1584, 1613, 2357, 2772, 3102
BstDSI CCRYGG 1 cut(s) 483
BstEII GGTNACC 1 cut(s) 2855
BstF5I GGATG 6 cut(s) 256, 420, 868, 1173, 1390, 1761
BstFNI CGCG 1 cut(s) 1280
BstMAI GTCTC 4 cut(s) 1124, 2072, 2135, 2719
BstMCI CGRYCG 3 cut(s) 109, 2887, 3059
BstMWI GCNNNNNNNGC 7 cut(s) 357, 1097, 1408, 1714, 2098, 2702, 2773
BstNI CCWGG 2 cut(s) 915, 1998
BstNSI RCATGY 2 cut(s) 381, 1537
BstPI GGTNACC 1 cut(s) 2855
BstSCI CCNGG 3 cut(s) 913, 1996, 2859
BstSFI CTRYAG 2 cut(s) 727, 2698
BstSLI GKGCMC 1 cut(s) 2919
BstSNI TACGTA 1 cut(s) 1373
BstUI CGCG 1 cut(s) 1280
BstV1I GCAGC 5 cut(s) 36, 491, 2438, 2807, 2837
BstX2I RGATCY 9 cut(s) 198, 264, 454, 1006, 1576, 1795, 1844, 2179, 2780
BstXI CCANNNNNNTGG 1 cut(s) 2200
BstYI RGATCY 9 cut(s) 198, 264, 454, 1006, 1576, 1795, 1844, 2179, 2780
BstZ17I GTATAC 1 cut(s) 2652
BsuRI GGCC 5 cut(s) 469, 637, 2192, 2696, 2739
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 3 cut(s) 375, 1261, 2603
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 6 cut(s) 256, 420, 868, 1173, 1390, 1761
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 5 cut(s) 61, 1098, 1129, 2475, 2608
BveI ACCTGC 1 cut(s) 2696
Cac8I GCNNGC 7 cut(s) 420, 1098, 1535, 2017, 2124, 2769, 2899
CaiI CAGNNNCTG 1 cut(s) 1562
CciI TCATGA 1 cut(s) 964
Cfr10I RCCGGY 3 cut(s) 347, 1100, 3029
Cfr13I GGNCC 4 cut(s) 467, 635, 911, 1152
CseI GACGC 1 cut(s) 2101
Csp6I GTAC 5 cut(s) 156, 657, 716, 1963, 2480
CspCI CAANNNNNGTGG 2 cut(s) 2115, 2150
CviQI GTAC 5 cut(s) 156, 657, 716, 1963, 2480
DdeI CTNAG 9 cut(s) 83, 168, 219, 1121, 1584, 1613, 2357, 2772, 3102
DraI TTTAAA 2 cut(s) 370, 1143
DraIII CACNNNGTG 1 cut(s) 243
DriI GACNNNNNGTC 1 cut(s) 3097
EaeI YGGCCR 1 cut(s) 2737
Eam1104I CTCTTC 3 cut(s) 387, 1155, 2623
Eam1105I GACNNNNNGTC 1 cut(s) 3097
EarI CTCTTC 3 cut(s) 387, 1155, 2623
EciI GGCGGA 1 cut(s) 1685
Ecl136II GAGCTC 1 cut(s) 2818
Eco105I TACGTA 1 cut(s) 1373
Eco130I CCWWGG 7 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528
Eco24I GRGCYC 1 cut(s) 2820
Eco31I GGTCTC 1 cut(s) 1124
Eco47I GGWCC 2 cut(s) 911, 1152
Eco53kI GAGCTC 1 cut(s) 2818
Eco57I CTGAAG 2 cut(s) 37, 624
Eco88I CYCGRG 5 cut(s) 95, 1817, 2790, 2819, 3095
Eco91I GGTNACC 1 cut(s) 2855
EcoICRI GAGCTC 1 cut(s) 2818
EcoO109I RGGNCCY 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 2855
EcoRI GAATTC 2 cut(s) 535, 583
EcoRII CCWGG 2 cut(s) 913, 1996
EcoT14I CCWWGG 7 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528
EcoT22I ATGCAT 1 cut(s) 1767
EcoT38I GRGCYC 1 cut(s) 2820
ErhI CCWWGG 7 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528
Esp3I CGTCTC 1 cut(s) 2072
FaqI GGGAC 1 cut(s) 1348
FauI CCCGC 1 cut(s) 2760
FbaI TGATCA 1 cut(s) 933
FblI GTMKAC 4 cut(s) 429, 2556, 2651, 2833
Fnu4HI GCNGC 7 cut(s) 6, 9, 25, 480, 2452, 2796, 2826
FokI GGATG 6 cut(s) 263, 427, 875, 1180, 1397, 1768
FriOI GRGCYC 1 cut(s) 2820
Fsp4HI GCNGC 7 cut(s) 6, 9, 25, 480, 2452, 2796, 2826
GluI GCNGC 7 cut(s) 6, 9, 25, 480, 2452, 2796, 2826
GsaI CCCAGC 2 cut(s) 2802, 2852
GsuI CTGGAG 1 cut(s) 2327
HaeIII GGCC 5 cut(s) 469, 637, 2192, 2696, 2739
HapII CCGG 8 cut(s) 28, 348, 447, 1101, 1382, 2861, 2956, 3030
HgaI GACGC 1 cut(s) 2101
Hin1I GRCGYC 1 cut(s) 2112
HincII GTYRAC 6 cut(s) 683, 1315, 2329, 2557, 2581, 2834
HindII GTYRAC 6 cut(s) 683, 1315, 2329, 2557, 2581, 2834
HindIII AAGCTT 3 cut(s) 49, 518, 1706
HinfI GANTC 9 cut(s) 602, 1227, 1870, 1952, 1990, 2260, 2712, 3098, 3107
HpaII CCGG 8 cut(s) 28, 348, 447, 1101, 1382, 2861, 2956, 3030
HphI GGTGA 7 cut(s) 310, 519, 1000, 1864, 2215, 2248, 2287
Hpy166II GTNNAC 8 cut(s) 430, 683, 1315, 2329, 2557, 2581, 2652, 2834
Hpy8I GTNNAC 8 cut(s) 430, 683, 1315, 2329, 2557, 2581, 2652, 2834
Hpy99I CGWCG 4 cut(s) 320, 557, 2558, 3004
HpyCH4IV ACGT 8 cut(s) 77, 318, 723, 1311, 1372, 1471, 2583, 3118
HpyF10VI GCNNNNNNNGC 7 cut(s) 357, 1097, 1408, 1714, 2098, 2702, 2773
HpyF3I CTNAG 9 cut(s) 83, 168, 219, 1121, 1584, 1613, 2357, 2772, 3102
HpySE526I ACGT 8 cut(s) 77, 318, 723, 1311, 1372, 1471, 2583, 3118
Hsp92I GRCGYC 1 cut(s) 2112
Ksp22I TGATCA 1 cut(s) 933
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 5 cut(s) 36, 491, 2438, 2807, 2837
LweI GCATC 5 cut(s) 150, 405, 1167, 1389, 2587
MaeII ACGT 8 cut(s) 77, 318, 723, 1311, 1372, 1471, 2583, 3118
MfeI CAATTG 2 cut(s) 293, 2253
MflI RGATCY 9 cut(s) 198, 264, 454, 1006, 1576, 1795, 1844, 2179, 2780
MhlI GDGCHC 3 cut(s) 2820, 2899, 2919
MlsI TGGCCA 1 cut(s) 2739
MluNI TGGCCA 1 cut(s) 2739
MlyI GAGTC 3 cut(s) 1236, 2721, 3107
MmeI TCCRAC 7 cut(s) 535, 1958, 2262, 2342, 2982, 2999, 3030
Mox20I TGGCCA 1 cut(s) 2739
Mph1103I ATGCAT 1 cut(s) 1767
MroXI GAANNNNTTC 4 cut(s) 456, 756, 1458, 2442
MscI TGGCCA 1 cut(s) 2739
MslI CAYNNNNRTG 2 cut(s) 1645, 1694
Msp20I TGGCCA 1 cut(s) 2739
MspA1I CMGCKG 3 cut(s) 2798, 2828, 2848
MspCI CTTAAG 4 cut(s) 878, 956, 1016, 2546
MspI CCGG 8 cut(s) 28, 348, 447, 1101, 1382, 2861, 2956, 3030
MspR9I CCNGG 3 cut(s) 915, 1998, 2861
MunI CAATTG 2 cut(s) 293, 2253
Mva1269I GAATGC 3 cut(s) 1844, 1882, 2300
MvaI CCWGG 2 cut(s) 915, 1998
MvnI CGCG 1 cut(s) 1280
MwoI GCNNNNNNNGC 7 cut(s) 357, 1097, 1408, 1714, 2098, 2702, 2773
NciI CCSGG 1 cut(s) 2861
NcoI CCATGG 1 cut(s) 483
NlaIV GGNNCC 5 cut(s) 636, 1187, 1771, 2916, 2935
NmuCI GTSAC 4 cut(s) 1852, 2236, 2806, 3025
NsiI ATGCAT 1 cut(s) 1767
NspI RCATGY 2 cut(s) 381, 1537
NspV TTCGAA 2 cut(s) 460, 512
PaeI GCATGC 1 cut(s) 1537
PaeR7I CTCGAG 5 cut(s) 95, 1817, 2790, 2819, 3095
PagI TCATGA 1 cut(s) 964
PaqCI CACCTGC 1 cut(s) 2696
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 720, 3056
PctI GAATGC 3 cut(s) 1844, 1882, 2300
PdmI GAANNNNTTC 4 cut(s) 456, 756, 1458, 2442
PfeI GAWTC 6 cut(s) 602, 1870, 1952, 1990, 2260, 3107
PflMI CCANNNNNTGG 1 cut(s) 2272
PkrI GCNGC 7 cut(s) 7, 10, 26, 481, 2453, 2797, 2827
PleI GAGTC 3 cut(s) 1235, 2720, 3106
PpsI GAGTC 3 cut(s) 1235, 2720, 3106
Ppu21I YACGTR 1 cut(s) 1373
Psp124BI GAGCTC 1 cut(s) 2820
Psp6I CCWGG 2 cut(s) 913, 1996
PspEI GGTNACC 1 cut(s) 2855
PspFI CCCAGC 2 cut(s) 2798, 2848
PspGI CCWGG 2 cut(s) 913, 1996
PspN4I GGNNCC 5 cut(s) 636, 1187, 1771, 2916, 2935
PspPI GGNCC 4 cut(s) 467, 635, 911, 1152
PspXI VCTCGAGB 5 cut(s) 95, 1817, 2790, 2819, 3095
PstNI CAGNNNCTG 1 cut(s) 1562
PsuI RGATCY 9 cut(s) 198, 264, 454, 1006, 1576, 1795, 1844, 2179, 2780
PvuII CAGCTG 3 cut(s) 2798, 2828, 2848
RsaI GTAC 5 cut(s) 157, 658, 717, 1964, 2481
RsaNI GTAC 5 cut(s) 156, 657, 716, 1963, 2480
RseI CAYNNNNRTG 2 cut(s) 1645, 1694
SacI GAGCTC 1 cut(s) 2820
SalI GTCGAC 2 cut(s) 2555, 2832
SatI GCNGC 7 cut(s) 6, 9, 25, 480, 2452, 2796, 2826
Sau96I GGNCC 4 cut(s) 467, 635, 911, 1152
SchI GAGTC 3 cut(s) 1236, 2721, 3107
ScrFI CCNGG 3 cut(s) 915, 1998, 2861
SduI GDGCHC 3 cut(s) 2820, 2899, 2919
SfaNI GCATC 5 cut(s) 150, 405, 1167, 1389, 2587
SfcI CTRYAG 2 cut(s) 727, 2698
Sfr274I CTCGAG 5 cut(s) 95, 1817, 2790, 2819, 3095
SfuI TTCGAA 2 cut(s) 460, 512
SinI GGWCC 2 cut(s) 911, 1152
SlaI CTCGAG 5 cut(s) 95, 1817, 2790, 2819, 3095
SmiMI CAYNNNNRTG 2 cut(s) 1645, 1694
SnaBI TACGTA 1 cut(s) 1373
SphI GCATGC 1 cut(s) 1537
SsiI CCGC 8 cut(s) 5, 8, 109, 1670, 2430, 2767, 2853, 2877
SspI AATATT 2 cut(s) 591, 756
SstI GAGCTC 1 cut(s) 2820
StyD4I CCNGG 3 cut(s) 913, 1996, 2859
StyI CCWWGG 7 cut(s) 483, 606, 885, 1129, 1181, 1449, 1528
TaiI ACGT 8 cut(s) 80, 321, 726, 1314, 1375, 1474, 2586, 3121
TaqII GACCGA 1 cut(s) 3073
TatI WGTACW 1 cut(s) 2479
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 6 cut(s) 602, 1870, 1952, 1990, 2260, 3107
TscAI CASTG 5 cut(s) 61, 1098, 1129, 2482, 2608
TseFI GTSAC 4 cut(s) 1852, 2236, 2806, 3025
TseI GCWGC 5 cut(s) 24, 479, 2451, 2795, 2825
Tsp45I GTSAC 4 cut(s) 1852, 2236, 2806, 3025
TspDTI ATGAA 9 cut(s) 118, 267, 596, 749, 1229, 1530, 1772, 2303, 2652
TspGWI ACGGA 1 cut(s) 1218
TspRI CASTG 5 cut(s) 61, 1098, 1129, 2482, 2608
Van91I CCANNNNNTGG 1 cut(s) 2272
Vha464I CTTAAG 4 cut(s) 878, 956, 1016, 2546
VpaK11BI GGWCC 2 cut(s) 911, 1152
XapI RAATTY 9 cut(s) 353, 535, 583, 768, 1788, 2042, 2172, 2206, 2461
XbaI TCTAGA 2 cut(s) 1003, 3110
XceI RCATGY 2 cut(s) 381, 1537
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 5 cut(s) 95, 1817, 2790, 2819, 3095
XmaJI CCTAGG 1 cut(s) 1181
XmiI GTMKAC 4 cut(s) 429, 2556, 2651, 2833
XmnI GAANNNNTTC 4 cut(s) 456, 756, 1458, 2442
Zsp2I ATGCAT 1 cut(s) 1767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.