AT4G17030

expansin-like b1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014117
Physical Location & Seq
Reverse (-)
9581562 .. 9583290
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17030.1

Sequence Viewer

Length: 753 bp
ATGAAGCATTCTCACGTTTTGCTTCTTCTATTTGTTCAAGTCATTGTCCTTTTGCCTCTCCTTTGTCTATCCGACGATTTTGTTAACTCTAGAGCTACTTATTATGGCAGCCCCGATTGCAAAGCAAATCCTCGGGGACATTGTGGGTATGGAGAATTTGGAAGAGATATCAATAACGGTGAAGTGAGTGGTGTTTCATGGCGACTATGGAACAATGGAACTGGCTGTGGTGCTTGTTACCAGGTGAGGTGCAAGATACCACCACACTGCAGTGAGGAAGGAGTATACGTAGTGGCTACGGACTCCGGAGAAGGAGATGGCACGGACTTCATCTTAAGCCCTAAGGCGTACGGACGTATGGCGCGACCCGGCACAGAAAATCAGCTCTACTCCTTCGGTGTAGTCAACGTTGAGTACCAAAGGATCCCTTGCCGATACGCAGGGTATAATCTGGTGTATAAGATCCATGAGAAAAGCTACAATCCTCATTATCTTGCCATCCTTGTCTTGTACGTTGGTGGTGTTAATGACATCCTCGCCGTTGAAGTCTGGCAGGAGGATTGCAAAGAGTGGAGACGTATGAGAAGAGTGTTTGGAGCGGTTCATGATTTGCAGAATCCACCTAGAGGCACTCTCACATTGAGGTTCTTAGTCTACGGAAGCGCAGGAATCAATTGGATCCAATCGCCAAACGCTATTCCCGCTGATTGGACTGCCGGAGCCACCTACGACTCCAACATTCTACTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

27.93

Weight (kDa)

6.64

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 64 - 139 1.2e-13 Lytic transglycolase
Expansin_C PF01357 154 - 234 1.1e-17 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 599
AccI GTMKAC 2 cut(s) 285, 654
AccII CGCG 1 cut(s) 364
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 2 cut(s) 599, 702
AclI AACGTT 1 cut(s) 408
AclWI GGATC 5 cut(s) 418, 431, 457, 673, 686
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 3 cut(s) 350, 416, 512
AfiI CCNNNNNNNGG 2 cut(s) 626, 708
AflII CTTAAG 1 cut(s) 334
AgsI TTSAA 2 cut(s) 38, 545
AjnI CCWGG 1 cut(s) 240
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 3 cut(s) 95, 385, 477
AluI AGCT 3 cut(s) 95, 385, 477
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 5 cut(s) 418, 431, 457, 673, 686
Ama87I CYCGRG 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 2 cut(s) 364, 665
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 191, 256
AvaI CYCGRG 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 342
BamHI GGATCC 2 cut(s) 423, 678
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 311, 506
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 2 cut(s) 90, 624
BfmI CTRYAG 1 cut(s) 268
BfrI CTTAAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 242, 369
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 3 cut(s) 425, 680, 721
BmrFI CCNGG 2 cut(s) 242, 369
BplI GAGNNNNNCTC 2 cut(s) 618, 650
BpuMI CCSGG 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 708
Bse1I ACTGG 1 cut(s) 226
Bse21I CCTNAGG 1 cut(s) 342
BseAI TCCGGA 1 cut(s) 305
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 498, 531
BseLI CCNNNNNNNGG 2 cut(s) 626, 708
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 3 cut(s) 306, 369, 717
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 626, 708
BsmAI GTCTC 1 cut(s) 568
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 132
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 3 cut(s) 423, 462, 678
BspACI CCGC 2 cut(s) 599, 702
BspEI TCCGGA 1 cut(s) 305
BspFNI CGCG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 3 cut(s) 425, 680, 721
BspMAI CTGCAG 1 cut(s) 272
BspPI GGATC 5 cut(s) 418, 431, 457, 673, 686
BspTI CTTAAG 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 599
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 3 cut(s) 423, 462, 678
BssNAI GTATAC 1 cut(s) 286
Bst1107I GTATAC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 157, 580
BstAFI CTTAAG 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 342, 649
BstF5I GGATG 2 cut(s) 498, 531
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 2 cut(s) 364, 665
BstKTI GATC 3 cut(s) 426, 465, 681
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 3 cut(s) 423, 462, 678
BstMWI GCNNNNNNNGC 2 cut(s) 117, 701
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 240, 367
BstSFI CTRYAG 1 cut(s) 268
BstSNI TACGTA 1 cut(s) 289
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 3 cut(s) 423, 462, 678
BstYI RGATCY 3 cut(s) 423, 462, 678
BstZ17I GTATAC 1 cut(s) 286
Bsu36I CCTNAGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 498, 531
BtsI GCAGTG 2 cut(s) 265, 277
BtsIMutI CAGTG 2 cut(s) 265, 277
CciI TCATGA 1 cut(s) 604
CfoI GCGC 2 cut(s) 364, 665
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 3 cut(s) 349, 415, 511
CviAII CATG 3 cut(s) 198, 467, 605
CviJI RGCY 8 cut(s) 95, 111, 225, 296, 339, 385, 477, 722
CviKI_1 RGCY 8 cut(s) 95, 111, 225, 296, 339, 385, 477, 722
CviQI GTAC 3 cut(s) 349, 415, 511
DdeI CTNAG 2 cut(s) 342, 649
DpnI GATC 3 cut(s) 425, 464, 680
DpnII GATC 3 cut(s) 423, 462, 678
Eam1104I CTCTTC 2 cut(s) 157, 580
EarI CTCTTC 2 cut(s) 157, 580
Eco105I TACGTA 1 cut(s) 289
Eco32I GATATC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 3 cut(s) 201, 470, 608
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 1 cut(s) 150
FatI CATG 3 cut(s) 197, 466, 604
FauI CCCGC 1 cut(s) 709
FblI GTMKAC 2 cut(s) 285, 654
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 485, 518
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 2 cut(s) 90, 624
GlaI GCGC 2 cut(s) 363, 664
GluI GCNGC 1 cut(s) 109
HapII CCGG 3 cut(s) 306, 369, 717
HhaI GCGC 2 cut(s) 364, 665
Hin1II CATG 3 cut(s) 201, 470, 608
Hin6I GCGC 2 cut(s) 362, 663
HinP1I GCGC 2 cut(s) 362, 663
HincII GTYRAC 2 cut(s) 85, 406
HindII GTYRAC 2 cut(s) 85, 406
HinfI GANTC 4 cut(s) 302, 616, 669, 731
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 3 cut(s) 306, 369, 717
HphI GGTGA 2 cut(s) 191, 256
Hpy166II GTNNAC 4 cut(s) 85, 286, 406, 655
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 90, 306, 605
Hpy8I GTNNAC 4 cut(s) 85, 286, 406, 655
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 272, 305, 403
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 6 cut(s) 15, 288, 355, 408, 513, 577
HpyCH4V TGCA 5 cut(s) 120, 252, 270, 564, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 701
HpyF3I CTNAG 2 cut(s) 342, 649
HpySE526I ACGT 6 cut(s) 15, 288, 355, 408, 513, 577
Hsp92II CATG 3 cut(s) 201, 470, 608
HspAI GCGC 2 cut(s) 362, 663
Kpn2I TCCGGA 1 cut(s) 305
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 423, 462, 678
LmnI GCTCC 2 cut(s) 596, 719
Lsp1109I GCAGC 1 cut(s) 120
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 2 cut(s) 90, 624
MaeII ACGT 6 cut(s) 15, 288, 355, 408, 513, 577
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 425, 464, 680
MbiI CCGCTC 1 cut(s) 599
MboI GATC 3 cut(s) 423, 462, 678
MboII GAAGA 3 cut(s) 17, 174, 597
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 3 cut(s) 423, 462, 678
MluCI AATT 2 cut(s) 155, 673
MlyI GAGTC 2 cut(s) 296, 725
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 66, 141, 240, 268, 495, 545, 550, 620, 636
MroI TCCGGA 1 cut(s) 305
MseI TTAA 4 cut(s) 84, 335, 525, 751
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 704
MspCI CTTAAG 1 cut(s) 334
MspI CCGG 3 cut(s) 306, 369, 717
MspR9I CCNGG 2 cut(s) 242, 369
MunI CAATTG 1 cut(s) 673
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 117, 701
NciI CCSGG 1 cut(s) 369
NdeII GATC 3 cut(s) 423, 462, 678
NlaIII CATG 3 cut(s) 201, 470, 608
NlaIV GGNNCC 3 cut(s) 425, 680, 721
OliI CACNNNNGTG 1 cut(s) 270
PagI TCATGA 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 616, 669
Pfl23II CGTACG 1 cut(s) 348
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 296, 725
PpsI GAGTC 2 cut(s) 296, 725
Ppu21I YACGTR 1 cut(s) 289
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 425, 680, 721
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 3 cut(s) 423, 462, 678
RsaI GTAC 3 cut(s) 350, 416, 512
RsaNI GTAC 3 cut(s) 349, 415, 511
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 4 cut(s) 84, 335, 525, 751
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 3 cut(s) 423, 462, 678
SchI GAGTC 2 cut(s) 296, 725
ScrFI CCNGG 2 cut(s) 242, 369
SexAI ACCWGGT 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SnaBI TACGTA 1 cut(s) 289
Sse9I AATT 2 cut(s) 155, 673
SsiI CCGC 2 cut(s) 599, 702
SspMI CTAG 2 cut(s) 90, 624
StyD4I CCNGG 2 cut(s) 240, 367
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 6 cut(s) 18, 291, 358, 411, 516, 580
TasI AATT 2 cut(s) 155, 673
TfiI GAWTC 2 cut(s) 616, 669
Tru1I TTAA 4 cut(s) 84, 335, 525, 751
Tru9I TTAA 4 cut(s) 84, 335, 525, 751
TscAI CASTG 2 cut(s) 272, 277
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 4 cut(s) 17, 186, 319, 593
TspGWI ACGGA 4 cut(s) 314, 338, 366, 672
TspRI CASTG 2 cut(s) 272, 277
Vha464I CTTAAG 1 cut(s) 334
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 89
XmiI GTMKAC 2 cut(s) 285, 654
XspI CTAG 2 cut(s) 90, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.