Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014117

Physical Location & Seq

Genomic Coordinates Reverse (-)

11985967 .. 11988208

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTAGCTTTCATTGTTTTCTTGCTATCCTCGGCCTAGTGCTCTTGCCTGCACTATGCACCTCTCAAGATACATTTACACGCTCCAGAGCAACCTATTATGGTAGCCCTGATTGCTATGGAAACCCAACTGGAGCTTGTGGTTATGGAGAATTTGGAAGGACCGTAAATGATGGTCAAGTATCTGCAGTTGCTAGGCTCTACAGAAATGGCACTGGCTGTGGTGGATGTTACAAGGTTAGGTGCATATACCCTCCACATTGCAGTAATGAAGGGGTGAATGTGGTGGTGACCGATTATGGCGAAGGAGACAGAACTGACTTCATCTTCACCCCTAAAGCTTATGGCAAGTTGGCAAACAGCCCAGCTTCAACTGAGATTTTGTTTGCTTATGGTGTGGTTGATATAGAATTCAGAAGGATCCCTTGCCAGTATCCTACTCCCAACCTGGTCTTCAAGGTCCATGAACATAGCAAAGCTCCATTATACTTGGCTATAGTGATGCAATATGTAGCTGGCCAGAATGATATCACAGCTGTTGAGTTGTGGCAGGAGGATTGCAAAGAATGGAGAGGCATGCGTAGAGTATTTGGAGCAGTATGGGACACTCAAAGCCCACCTAGTGGTTCCATTGACATGAGGTTCCAAGTGAGTGGCAGCGCAGGGGTCAAATGGGTGCAGGCACCCAAAGCCATCCCTAGTGATTGGAAGGCCGGGGCTGCCTATACATCAGACATTCAGCTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

27.29

Weight (kDa)

6.87

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	63 - 134	2.5e-09	Lytic transglycolase
Expansin_C	PF01357	152 - 233	9.1e-20	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17030
fragaria_vesca	FvH4_5g20290
malus_domestica	MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica	Prupe.5G057900_v2.0.a1
pyrus_communis	pycom06g04050
rosa_chinensis	RchiOBHm_Chr7g0205401
rosa_laevigata	RLG00000003384
rosa_multiflora	Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252410
rosa_rugosa	Rorug07G0091000
rosa_samantha	Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana	Rw7G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	623
AclWI	GGATC	2 cut(s)	415, 428
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	152, 410
AdeI	CACNNNGTG	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	2 cut(s)	372, 457
AjnI	CCWGG	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	8 cut(s)	9, 137, 341, 368, 479, 515, 536, 742
AluI	AGCT	8 cut(s)	9, 137, 341, 368, 479, 515, 536, 742
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	415, 428
AoxI	GGCC	3 cut(s)	34, 517, 711
ApeKI	GCWGC	2 cut(s)	657, 719
ApoI	RAATTY	2 cut(s)	152, 410
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	162, 460
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	289, 301, 322
AvaII	GGWCC	2 cut(s)	162, 460
BalI	TGGCCA	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	669, 706
BccI	CCATC	2 cut(s)	167, 701
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	4 cut(s)	38, 195, 621, 699
BfmI	CTRYAG	3 cut(s)	186, 202, 495
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	658, 720
BlsI	GCNGC	2 cut(s)	659, 721
Bme1390I	CCNGG	2 cut(s)	449, 715
Bme18I	GGWCC	2 cut(s)	162, 460
BmgT120I	GGNCC	2 cut(s)	162, 460
BmiI	GGNNCC	4 cut(s)	422, 628, 644, 684
BmrFI	CCNGG	2 cut(s)	449, 715
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	2 cut(s)	70, 153
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	31, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	3 cut(s)	136, 220, 430
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	31, 714
BseGI	GGATG	2 cut(s)	233, 693
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	3 cut(s)	136, 220, 430
BseXI	GCAGC	2 cut(s)	669, 706
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	2 cut(s)	36, 698
BshFI	GGCC	3 cut(s)	36, 519, 713
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	714
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	3 cut(s)	36, 519, 713
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	420
BspANI	GGCC	3 cut(s)	36, 519, 713
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	422, 628, 644, 684
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	415, 428
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	136, 220, 430
BssECI	CCNNGG	2 cut(s)	31, 714
BssMI	GATC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	4 cut(s)	51, 517, 578, 681
BstDEI	CTNAG	2 cut(s)	375, 747
BstEII	GGTNACC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	233, 693
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	420
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 689, 719
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	580
BstPI	GGTNACC	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	447, 713
BstSFI	CTRYAG	3 cut(s)	186, 202, 495
BstV1I	GCAGC	2 cut(s)	669, 706
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	36, 519, 713
BtsCI	GGATG	2 cut(s)	233, 693
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	51, 517, 578, 681
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	162, 460
CsiI	ACCWGGT	1 cut(s)	447
CviAII	CATG	3 cut(s)	464, 577, 637
DdeI	CTNAG	2 cut(s)	375, 747
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	162, 460
Eco91I	GGTNACC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	529
FaeI	CATG	3 cut(s)	467, 580, 640
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	3 cut(s)	463, 576, 636
Fnu4HI	GCNGC	2 cut(s)	658, 720
FokI	GGATG	2 cut(s)	240, 680
Fsp4HI	GCNGC	2 cut(s)	658, 720
FspBI	CTAG	4 cut(s)	38, 195, 621, 699
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	2 cut(s)	658, 720
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	70, 153
HaeIII	GGCC	3 cut(s)	36, 519, 713
HapII	CCGG	1 cut(s)	714
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	3 cut(s)	467, 580, 640
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HindIII	AAGCTT	1 cut(s)	339
HpaII	CCGG	1 cut(s)	714
HphI	GGTGA	3 cut(s)	289, 301, 322
Hpy188I	TCNGA	2 cut(s)	416, 733
Hpy188III	TCNNGA	2 cut(s)	68, 87
HpyAV	CCTTC	5 cut(s)	153, 266, 299, 411, 703
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	8 cut(s)	53, 60, 188, 246, 264, 505, 561, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 689, 719
HpyF3I	CTNAG	2 cut(s)	375, 747
Hsp92II	CATG	3 cut(s)	467, 580, 640
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	1 cut(s)	420
LmnI	GCTCC	4 cut(s)	89, 134, 484, 593
Lsp1109I	GCAGC	2 cut(s)	669, 706
LweI	GCATC	1 cut(s)	492
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	4 cut(s)	38, 195, 621, 699
MaeIII	GTNAC	2 cut(s)	230, 289
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	2 cut(s)	319, 445
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	2 cut(s)	152, 410
MluNI	TGGCCA	1 cut(s)	519
MnlI	CCTC	6 cut(s)	41, 73, 264, 547, 566, 633
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	714
MspR9I	CCNGG	2 cut(s)	449, 715
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	114, 689, 719
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	1 cut(s)	420
NlaIII	CATG	3 cut(s)	467, 580, 640
NlaIV	GGNNCC	4 cut(s)	422, 628, 644, 684
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	659, 721
Psp6I	CCWGG	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	422, 628, 644, 684
PspPI	GGNCC	2 cut(s)	162, 460
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	635
SatI	GCNGC	2 cut(s)	658, 720
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	2 cut(s)	162, 460
ScrFI	CCNGG	2 cut(s)	449, 715
SduI	GDGCHC	1 cut(s)	45
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	3 cut(s)	186, 202, 495
SinI	GGWCC	2 cut(s)	162, 460
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	2 cut(s)	152, 410
SspMI	CTAG	4 cut(s)	38, 195, 621, 699
StyD4I	CCNGG	2 cut(s)	447, 713
TaaI	ACNGT	1 cut(s)	166
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	152, 410
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	657, 719
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	285, 313, 480
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	162, 460
XapI	RAATTY	2 cut(s)	152, 410
XceI	RCATGY	1 cut(s)	580
XspI	CTAG	4 cut(s)	38, 195, 621, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.