MD06G1047600.v1.1

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014117
Physical Location & Seq
Forward (+)
6451318 .. 6453328
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1047600.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGAGTTTTTCCTTAAGCACATAACTTGGTTTCTTTGTATCACGGTACTCTTGCCTGCTCTATGTACCTCTCAATACACATATGTATCCTCTAGAGCAACATATTATGGTAGCCCAGATTGCTACGGGAACCCAACTGGAGCTTGTGGGTTTGGAGAATATGGAACAAAGGTCAACGACGGTCAAGTATCCGCAGTTTCTAGGCTGTACAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGTGAGGTGCAAGATCCCTCAGCATTGCAGCAGTGATGGGGTAACTACGGTGGTGACAGACCACGGCGAAGGCGACAGAACTGACTTCATCTTCAGCCCAAGATCTTATGCAAAGTTGGCAAACAGTCCAGCTTCATCTGAAGTTTTATTTGCTTCCGGTGTCGTTGAAATCGAATACAGAAGGGTCGCTTGCAGGTTCTCTGGTAAAGGACTTGTGTTCAAAGTCCATGAAGGCAGTAAATATCCATTTTACTTTGCCTTAGTCATTCAGTATGTATCTGGGATAAATGAAATCACAGCAGTTGAGGTTTTGCAGGAGGATAACCAGCAATGGAGGCCAATGAGGAGAGTATATGGAGCAGTGTGGGACCTTCAAAACCCACCAACTGGTGCCTTTTCCTTGAGGTTCCAAATAGTGAGTGGCAGGGCAACTGCAGAGGTGGACTGGATGCAGGCAACCAAAGTCATCCCTGCTGATTGGGAGGCTGGGGCTGCATATCCGTCAGACATTCAGCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

28.14

Weight (kDa)

6.1

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 67 - 140 2.1e-09 Lytic transglycolase
Expansin_C PF01357 154 - 238 2.8e-18 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 629
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 250
AcuI CTGAAG 2 cut(s) 319, 402
AfaI GTAC 3 cut(s) 48, 67, 209
AfiI CCNNNNNNNGG 1 cut(s) 629
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 410, 463, 617
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 143, 374, 757
AluI AGCT 3 cut(s) 143, 374, 757
AlwI GGATC 1 cut(s) 250
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 270, 734
AspS9I GGNCC 1 cut(s) 610
AsuHPI GGTGA 2 cut(s) 256, 307
AvaII GGWCC 1 cut(s) 610
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BanI GGYRCC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 282, 721
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 2 cut(s) 97, 199
BfaI CTAG 2 cut(s) 93, 201
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 426
BfuI GTATCC 2 cut(s) 97, 199
BglII AGATCT 1 cut(s) 344
BisI GCNGC 2 cut(s) 271, 735
BlsI GCNGC 2 cut(s) 272, 736
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 4 cut(s) 131, 611, 634, 650
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 664
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 4 cut(s) 142, 226, 634, 692
Bse3DI GCAATG 2 cut(s) 265, 578
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 696, 708
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMI GCAATG 2 cut(s) 265, 578
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 4 cut(s) 142, 226, 634, 692
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 2 cut(s) 282, 721
BseYI CCCAGC 1 cut(s) 728
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 1 cut(s) 632
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 255, 344
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 131, 611, 634, 650
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 426
BspPI GGATC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 632
BspTI CTTAAG 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 265, 578
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 4 cut(s) 142, 226, 634, 692
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 255, 344
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 4 cut(s) 46, 182, 292, 368
BstAFI CTTAAG 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 57, 235, 433, 696
BstDEI CTNAG 2 cut(s) 261, 502
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 696, 708
BstKTI GATC 2 cut(s) 258, 347
BstMBI GATC 2 cut(s) 255, 344
BstMWI GCNNNNNNNGC 4 cut(s) 120, 359, 577, 734
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 282, 721
BstX2I RGATCY 2 cut(s) 255, 344
BstYI RGATCY 2 cut(s) 255, 344
BsuI GTATCC 2 cut(s) 97, 199
BsuRI GGCC 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 696, 708
BtsI GCAGTG 2 cut(s) 280, 609
BtsIMutI CAGTG 2 cut(s) 280, 609
BveI ACCTGC 1 cut(s) 426
Cac8I GCNNGC 4 cut(s) 57, 235, 433, 696
Cfr13I GGNCC 1 cut(s) 610
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 3 cut(s) 47, 66, 208
CviAII CATG 2 cut(s) 234, 470
CviQI GTAC 3 cut(s) 47, 66, 208
DdeI CTNAG 2 cut(s) 261, 502
DpnI GATC 2 cut(s) 257, 346
DpnII GATC 2 cut(s) 255, 344
Eco47I GGWCC 1 cut(s) 610
Eco57I CTGAAG 2 cut(s) 319, 402
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 237, 473
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 1 cut(s) 623
FatI CATG 2 cut(s) 233, 469
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 271, 735
FokI GGATG 2 cut(s) 695, 703
Fsp4HI GCNGC 2 cut(s) 271, 735
FspBI CTAG 2 cut(s) 93, 201
GluI GCNGC 2 cut(s) 271, 735
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 399
Hin1II CATG 2 cut(s) 237, 473
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 399
HphI GGTGA 2 cut(s) 256, 307
Hpy166II GTNNAC 2 cut(s) 175, 685
Hpy188I TCNGA 2 cut(s) 382, 748
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 175, 685
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 305, 417, 467, 623
HpyCH4III ACNGT 4 cut(s) 46, 182, 292, 368
HpyCH4V TGCA 9 cut(s) 233, 252, 270, 353, 435, 556, 677, 694, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 359, 577, 734
HpyF3I CTNAG 2 cut(s) 261, 502
Hsp92II CATG 2 cut(s) 237, 473
Kzo9I GATC 2 cut(s) 255, 344
LmnI GCTCC 2 cut(s) 140, 599
Lsp1109I GCAGC 2 cut(s) 282, 721
LweI GCATC 1 cut(s) 681
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 2 cut(s) 93, 201
MaeIII GTNAC 2 cut(s) 283, 295
MalI GATC 2 cut(s) 257, 346
MboI GATC 2 cut(s) 255, 344
MboII GAAGA 1 cut(s) 325
MflI RGATCY 2 cut(s) 255, 344
MseI TTAA 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 120, 359, 577, 734
NdeI CATATG 1 cut(s) 82
NdeII GATC 2 cut(s) 255, 344
NlaIII CATG 2 cut(s) 237, 473
NlaIV GGNNCC 4 cut(s) 131, 611, 634, 650
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 237
PaeI GCATGC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 411
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 2 cut(s) 272, 736
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 4 cut(s) 131, 611, 634, 650
PspPI GGNCC 1 cut(s) 610
PspPPI RGGWCCY 1 cut(s) 610
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 255, 344
RsaI GTAC 3 cut(s) 48, 67, 209
RsaNI GTAC 3 cut(s) 47, 66, 208
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 271, 735
Sau3AI GATC 2 cut(s) 255, 344
Sau96I GGNCC 1 cut(s) 610
ScrFI CCNGG 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 1 cut(s) 681
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 610
SmlI CTYRAG 2 cut(s) 14, 643
SmoI CTYRAG 2 cut(s) 14, 643
SphI GCATGC 1 cut(s) 237
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 93, 201
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 4 cut(s) 46, 182, 292, 368
TaqI TCGA 2 cut(s) 414, 759
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 280, 609
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 270, 734
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 4 cut(s) 319, 366, 486, 546
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 2 cut(s) 280, 609
Van91I CCANNNNNTGG 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 610
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XspI CTAG 2 cut(s) 93, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.