RchiOBHm_Chr7g0205401

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014117
Physical Location & Seq
Reverse (-)
23082487 .. 23084411
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18381

Sequence Viewer

Length: 750 bp
ATGGGTGGTTTTCATTTTTTTCTTGCTATCCTAGGCCTAGTGCTCTTGCCAACACTATGCACCTCTCAAGATACATTTACACGCTCCAGAGCAACCTATTATGGTAGCCCTGATTGCTATGGAACCCCAACTGGAGCTTGTGGCTATGGAGAATATGGAAGGACCGTAAATGATGGTCAAGTATCTGCAGTTGCTAGGCTCTACAGAAATGGCACTGGCTGTGGTGGATGTTACCAGGTTAGGTGCATATACCCTCCACATTGCAGTAATGATGGGGTGAATGCGGTGGTGACGGACTACGGCGAAGGAGACAGAACTGACTTCATCTTCAGCCCTAGAGCCTATGCAAAGTTGGCAAACAACCCAGCTTCAACGGAGGTTTTATTTGCTTATGGTGTGGTTGATATAGAATTCAGAAGAATCCCTTGCCGGTATTCTACACCCAACCTGGTTTTCAAGGTCCATGAACATAGCAAATTTCCTGAATACTTGGCTATAGTCGTTCAGTATGTAGCTGGCCGGAATGATATCACAGCTGTCGAGTTCTGGCAGGAGGATTGCAAACAATGGAGCAGCATGCGTAGAGCATATGGAGCAGTATGGGACACTCCAACCCCACCTAGCGGTTCCATTGACTTGAGGTTCCAAGTGAGTGGCAGCGCAGGGAACAAATGGGTGCAGGCATCCAACGCCATCCCTGCTGATTGGAAGGCCGGGGCTGCCTATACATCAGCCATTCAGCTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

249

Amino Acids

27.33

Weight (kDa)

6.87

Isoelectric Point (pI)

27.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 63 - 130 2.2e-08 Lytic transglycolase
Expansin_C PF01357 152 - 233 4.1e-21 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 284, 624
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 2 cut(s) 410, 476
AcuI CTGAAG 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 623
AgsI TTSAA 2 cut(s) 372, 457
AjnI CCWGG 2 cut(s) 234, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 5 cut(s) 137, 368, 515, 536, 742
AluI AGCT 5 cut(s) 137, 368, 515, 536, 742
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 303
AoxI GGCC 3 cut(s) 34, 517, 711
ApeKI GCWGC 3 cut(s) 573, 657, 719
ApoI RAATTY 2 cut(s) 410, 476
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 162, 460
AsuC2I CCSGG 1 cut(s) 715
AsuHPI GGTGA 2 cut(s) 289, 301
AvaII GGWCC 2 cut(s) 162, 460
AvrII CCTAGG 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 585, 669, 706
BccI CCATC 3 cut(s) 167, 266, 701
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 236, 449
BcnI CCSGG 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 5 cut(s) 32, 38, 195, 336, 621
BfmI CTRYAG 3 cut(s) 186, 202, 495
BisI GCNGC 3 cut(s) 574, 658, 720
BlnI CCTAGG 1 cut(s) 31
BlsI GCNGC 3 cut(s) 575, 659, 721
Bme1390I CCNGG 3 cut(s) 236, 449, 715
Bme18I GGWCC 2 cut(s) 162, 460
BmgT120I GGNCC 2 cut(s) 162, 460
BmiI GGNNCC 3 cut(s) 124, 628, 644
BmrFI CCNGG 3 cut(s) 236, 449, 715
BmsI GCATC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 70, 153
BpuEI CTTGAG 2 cut(s) 51, 658
BpuMI CCSGG 1 cut(s) 715
BsaJI CCNNGG 2 cut(s) 31, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 623
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 2 cut(s) 136, 220
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 236, 449
BseDI CCNNGG 2 cut(s) 31, 714
BseGI GGATG 3 cut(s) 233, 683, 693
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 136, 220
BseXI GCAGC 3 cut(s) 585, 669, 706
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 3 cut(s) 36, 519, 713
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 3 cut(s) 430, 520, 714
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 3 cut(s) 36, 519, 713
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 2 cut(s) 284, 624
BspANI GGCC 3 cut(s) 36, 519, 713
BspLI GGNNCC 3 cut(s) 124, 628, 644
BspMAI CTGCAG 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 2 cut(s) 136, 220
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 31, 714
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 236, 449
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 517, 578, 681
BstF5I GGATG 3 cut(s) 233, 683, 693
BstHHI GCGC 1 cut(s) 662
BstMAI GTCTC 1 cut(s) 303
BstMWI GCNNNNNNNGC 6 cut(s) 114, 353, 593, 689, 698, 719
BstNI CCWGG 2 cut(s) 236, 449
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 234, 447, 713
BstSFI CTRYAG 3 cut(s) 186, 202, 495
BstV1I GCAGC 3 cut(s) 585, 669, 706
BstXI CCANNNNNNTGG 1 cut(s) 653
BsuRI GGCC 3 cut(s) 36, 519, 713
BtsCI GGATG 3 cut(s) 233, 683, 693
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 517, 578, 681
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 2 cut(s) 162, 460
CsiI ACCWGGT 2 cut(s) 234, 447
CviAII CATG 2 cut(s) 464, 577
EaeI YGGCCR 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 36
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 162, 460
Eco57I CTGAAG 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 234, 447
EcoRV GATATC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 467, 580
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FaqI GGGAC 1 cut(s) 617
FatI CATG 2 cut(s) 463, 576
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 574, 658, 720
FokI GGATG 3 cut(s) 240, 670, 680
Fsp4HI GCNGC 3 cut(s) 574, 658, 720
FspBI CTAG 5 cut(s) 32, 38, 195, 336, 621
GlaI GCGC 1 cut(s) 661
GluI GCNGC 3 cut(s) 574, 658, 720
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 2 cut(s) 70, 153
HaeIII GGCC 3 cut(s) 36, 519, 713
HapII CCGG 3 cut(s) 430, 520, 714
HhaI GCGC 1 cut(s) 662
Hin1II CATG 2 cut(s) 467, 580
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 1 cut(s) 420
HpaII CCGG 3 cut(s) 430, 520, 714
HphI GGTGA 2 cut(s) 289, 301
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 3 cut(s) 68, 87, 482
HpyAV CCTTC 3 cut(s) 153, 299, 703
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 7 cut(s) 60, 188, 246, 264, 347, 561, 679
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 353, 593, 689, 698, 719
Hsp92II CATG 2 cut(s) 467, 580
HspAI GCGC 1 cut(s) 660
LmnI GCTCC 4 cut(s) 89, 134, 570, 593
Lsp1109I GCAGC 3 cut(s) 585, 669, 706
LweI GCATC 1 cut(s) 692
MabI ACCWGGT 2 cut(s) 234, 447
MaeI CTAG 5 cut(s) 32, 38, 195, 336, 621
MaeIII GTNAC 2 cut(s) 230, 289
MboII GAAGA 2 cut(s) 319, 429
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 410, 476, 745
MmeI TCCRAC 2 cut(s) 635, 711
MnlI CCTC 5 cut(s) 73, 264, 370, 547, 633
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 430, 520, 714
MspR9I CCNGG 3 cut(s) 236, 449, 715
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 2 cut(s) 236, 449
MwoI GCNNNNNNNGC 6 cut(s) 114, 353, 593, 689, 698, 719
NciI CCSGG 1 cut(s) 715
NdeI CATATG 1 cut(s) 589
NlaIII CATG 2 cut(s) 467, 580
NlaIV GGNNCC 3 cut(s) 124, 628, 644
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 580
PaeI GCATGC 1 cut(s) 580
PceI AGGCCT 1 cut(s) 36
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 420
PkrI GCNGC 3 cut(s) 575, 659, 721
Psp6I CCWGG 2 cut(s) 234, 447
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 234, 447
PspN4I GGNNCC 3 cut(s) 124, 628, 644
PspPI GGNCC 2 cut(s) 162, 460
PstI CTGCAG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 536
SatI GCNGC 3 cut(s) 574, 658, 720
Sau96I GGNCC 2 cut(s) 162, 460
ScrFI CCNGG 3 cut(s) 236, 449, 715
SduI GDGCHC 1 cut(s) 45
SexAI ACCWGGT 2 cut(s) 234, 447
SfaNI GCATC 1 cut(s) 692
SfcI CTRYAG 3 cut(s) 186, 202, 495
SinI GGWCC 2 cut(s) 162, 460
SmlI CTYRAG 2 cut(s) 66, 637
SmoI CTYRAG 2 cut(s) 66, 637
SphI GCATGC 1 cut(s) 580
Sse9I AATT 3 cut(s) 410, 476, 745
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 2 cut(s) 284, 624
SspMI CTAG 5 cut(s) 32, 38, 195, 336, 621
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 234, 447, 713
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 540
TasI AATT 3 cut(s) 410, 476, 745
TfiI GAWTC 1 cut(s) 420
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 573, 657, 719
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 313, 480
TspGWI ACGGA 2 cut(s) 308, 389
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 162, 460
XapI RAATTY 2 cut(s) 410, 476
XceI RCATGY 1 cut(s) 580
XmaJI CCTAGG 1 cut(s) 31
XspI CTAG 5 cut(s) 32, 38, 195, 336, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.