pycom06g04050

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014117
Physical Location & Seq
Forward (+)
5092698 .. 5094680
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04050.4

Sequence Viewer

Length: 1020 bp
ATGTCAGTCCCGGCCACCAAAAAAGATCAATATCGAAGGTCCCAACTCCCACGTTCAAGTACACGTTATCAATCTAATCCAAAACTCCAGAGCTCTCTTATTTCTTTTGCACGCTGTAGTTCCAAAGTGGAAGAAAAAGTACGATACCTTTGCTCTCACAACCCTCCTAAACTCATTTGCTTAATCTATCTGATTATCGACTTACTTTTCGTAATTAACTTGCATTGTTTAGGAAAAACTGTTTCATACAGAAACATGGAGTTTTTCCTTAAGCACATAACTTGGTTTCTTTGTATCATGGTACTCTTGCCTGCTCTATGTACCTCTCAATACACATATGTATCCTCTAGGGCAACCTATTATGGTAGCCCAGATTGCTATGGGAACCCAACTGGAGCTTGTGGGTATGGAGAATATGGAAGAAAGGTTAACGACGGTCAAGTATCCGCAGTTTCTAGGCTGTACAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGTGAGGTGCAAGATCCCTCAGCATTGCAACAGTGATGGGGTAACTACGGTGGTGACAGACCACGGTGAAGGCGACAGAACTGACTTCATCTTCAGCCCAAGATCTTATGCAAAGTTGGCAAACAGTCCAGCTTCATCTGAAGTTTTATTTGCTTCTGGTGTCGTTGAAATCGAATACAGAAGGGTCGCTTGCAGGTTCTCTCGTTCCGAACTTGTGTTCAAAGTCCATGAAGGCAGTAAATATCCATTTTACTTTGCCTTAGTCATTCAGTATATATCTGGGATAAATGACATCACAGCAGTTGACGTTTGGCAGGAGGATCGCGCGCAATGGAGGCCAATGAGGAGAGTATATGGAGCAGTGTGGGACCTCCAAAACCCACCAACTGGTGCCCTTTCCTTCAGGTTCCAAAGAGTGAGTGGCAGGGCAACTGCAGAGGTGGACTGGATGCAGGCAACCAAAGTCATCCCTGCTGATTGGGAGGCTGGGGCTGCATATCCGTCAGACATTCAGCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

340

Amino Acids

38.31

Weight (kDa)

8.95

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 884
AccII CGCG 2 cut(s) 822, 824
AciI CCGC 1 cut(s) 447
AclWI GGATC 2 cut(s) 505, 825
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 3 cut(s) 574, 657, 883
AfaI GTAC 5 cut(s) 61, 141, 303, 322, 464
AfiI CCNNNNNNNGG 1 cut(s) 884
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 57, 665, 718
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 4 cut(s) 93, 398, 629, 1012
AluI AGCT 4 cut(s) 93, 398, 629, 1012
Alw21I GWGCWC 1 cut(s) 95
AlwI GGATC 2 cut(s) 505, 825
AoxI GGCC 2 cut(s) 12, 833
ApeKI GCWGC 1 cut(s) 989
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspLEI GCGC 2 cut(s) 824, 826
AspS9I GGNCC 2 cut(s) 39, 865
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 511, 562, 575
AvaII GGWCC 2 cut(s) 39, 865
BaeGI GKGCMC 1 cut(s) 892
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 95
BarI GAAGNNNNNNTAC 2 cut(s) 123, 155
Bbv12I GWGCWC 1 cut(s) 95
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 976
BccI CCATC 1 cut(s) 527
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 800, 834
BciT130I CCWGG 1 cut(s) 497
BciVI GTATCC 2 cut(s) 352, 454
BcnI CCSGG 1 cut(s) 11
BfaI CTAG 2 cut(s) 348, 456
BfmI CTRYAG 2 cut(s) 115, 930
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 681
BfuI GTATCC 2 cut(s) 352, 454
BglII AGATCT 1 cut(s) 599
BisI GCNGC 1 cut(s) 990
BlsI GCNGC 1 cut(s) 991
Bme1390I CCNGG 2 cut(s) 11, 497
Bme18I GGWCC 2 cut(s) 39, 865
BmgT120I GGNCC 2 cut(s) 39, 865
BmiI GGNNCC 5 cut(s) 41, 386, 866, 889, 905
BmrFI CCNGG 2 cut(s) 11, 497
BmsI GCATC 1 cut(s) 936
BpmI CTGGAG 2 cut(s) 71, 414
Bpu10I CCTNAGC 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 884
Bse1I ACTGG 4 cut(s) 397, 481, 889, 947
Bse3DI GCAATG 2 cut(s) 520, 833
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 951, 963
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 884
BseMI GCAATG 2 cut(s) 520, 833
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 4 cut(s) 397, 481, 889, 947
BsePI GCGCGC 1 cut(s) 822
BseRI GAGGAG 1 cut(s) 856
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 1 cut(s) 976
BseYI CCCAGC 1 cut(s) 983
Bsh1236I CGCG 2 cut(s) 822, 824
BshFI GGCC 2 cut(s) 14, 835
BshNI GGYRCC 1 cut(s) 887
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 2 cut(s) 25, 878
BslI CCNNNNNNNGG 1 cut(s) 884
BsmFI GGGAC 2 cut(s) 25, 878
BsnI GGCC 2 cut(s) 14, 835
Bsp1286I GDGCHC 2 cut(s) 95, 892
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 25, 510, 599, 817
BspACI CCGC 1 cut(s) 447
BspANI GGCC 2 cut(s) 14, 835
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 2 cut(s) 822, 824
BspLI GGNNCC 5 cut(s) 41, 386, 866, 889, 905
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 2 cut(s) 505, 825
BspT107I GGYRCC 1 cut(s) 887
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 520, 833
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 4 cut(s) 397, 481, 889, 947
BssECI CCNNGG 1 cut(s) 559
BssHII GCGCGC 1 cut(s) 822
BssMI GATC 4 cut(s) 25, 510, 599, 817
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 6 cut(s) 241, 437, 530, 547, 563, 623
BstAFI CTTAAG 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 6 cut(s) 112, 312, 490, 688, 824, 951
BstDEI CTNAG 2 cut(s) 516, 757
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 2 cut(s) 951, 963
BstFNI CGCG 2 cut(s) 822, 824
BstHHI GCGC 2 cut(s) 824, 826
BstKTI GATC 4 cut(s) 28, 513, 602, 820
BstMBI GATC 4 cut(s) 25, 510, 599, 817
BstMWI GCNNNNNNNGC 4 cut(s) 375, 614, 832, 989
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 9, 495
BstSFI CTRYAG 2 cut(s) 115, 930
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 2 cut(s) 822, 824
BstV1I GCAGC 1 cut(s) 976
BstX2I RGATCY 2 cut(s) 510, 599
BstYI RGATCY 2 cut(s) 510, 599
BsuI GTATCC 2 cut(s) 352, 454
BsuRI GGCC 2 cut(s) 14, 835
BtgI CCRYGG 1 cut(s) 559
BtsCI GGATG 2 cut(s) 951, 963
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 535, 864
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 6 cut(s) 112, 312, 490, 688, 824, 951
CfoI GCGC 2 cut(s) 824, 826
Cfr13I GGNCC 2 cut(s) 39, 865
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 5 cut(s) 60, 140, 302, 321, 463
CviAII CATG 4 cut(s) 256, 298, 489, 725
CviQI GTAC 5 cut(s) 60, 140, 302, 321, 463
DdeI CTNAG 2 cut(s) 516, 757
DpnI GATC 4 cut(s) 27, 512, 601, 819
DpnII GATC 4 cut(s) 25, 510, 599, 817
EaeI YGGCCR 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 39, 865
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 574, 657, 883
EcoICRI GAGCTC 1 cut(s) 93
EcoO109I RGGNCCY 2 cut(s) 39, 865
EcoRII CCWGG 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 4 cut(s) 259, 301, 492, 728
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FaqI GGGAC 2 cut(s) 25, 878
FatI CATG 4 cut(s) 255, 297, 488, 724
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 990
FokI GGATG 2 cut(s) 950, 958
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 990
FspBI CTAG 2 cut(s) 348, 456
GlaI GCGC 2 cut(s) 823, 825
GluI GCNGC 1 cut(s) 990
GsaI CCCAGC 1 cut(s) 987
GsuI CTGGAG 2 cut(s) 71, 414
HaeIII GGCC 2 cut(s) 14, 835
HapII CCGG 1 cut(s) 11
HhaI GCGC 2 cut(s) 824, 826
Hin1II CATG 4 cut(s) 259, 301, 492, 728
Hin6I GCGC 2 cut(s) 822, 824
HinP1I GCGC 2 cut(s) 822, 824
HincII GTYRAC 2 cut(s) 430, 802
HindII GTYRAC 2 cut(s) 430, 802
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 1 cut(s) 11
HphI GGTGA 3 cut(s) 511, 562, 575
Hpy166II GTNNAC 4 cut(s) 62, 430, 802, 940
Hpy188I TCNGA 4 cut(s) 192, 637, 706, 1003
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 4 cut(s) 62, 430, 802, 940
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 5 cut(s) 30, 560, 672, 722, 907
HpyCH4III ACNGT 6 cut(s) 241, 437, 530, 547, 563, 623
HpyCH4IV ACGT 3 cut(s) 52, 64, 804
HpyF10VI GCNNNNNNNGC 4 cut(s) 375, 614, 832, 989
HpyF3I CTNAG 2 cut(s) 516, 757
HpySE526I ACGT 3 cut(s) 52, 64, 804
Hsp92II CATG 4 cut(s) 259, 301, 492, 728
HspAI GCGC 2 cut(s) 822, 824
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 25, 510, 599, 817
LmnI GCTCC 2 cut(s) 395, 854
Lsp1109I GCAGC 1 cut(s) 976
LweI GCATC 1 cut(s) 936
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 2 cut(s) 348, 456
MaeII ACGT 3 cut(s) 52, 64, 804
MaeIII GTNAC 2 cut(s) 538, 550
MalI GATC 4 cut(s) 27, 512, 601, 819
MboI GATC 4 cut(s) 25, 510, 599, 817
MboII GAAGA 3 cut(s) 143, 432, 580
MflI RGATCY 2 cut(s) 510, 599
MhlI GDGCHC 2 cut(s) 95, 892
MluCI AATT 1 cut(s) 213
MseI TTAA 4 cut(s) 182, 216, 270, 429
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 11, 497
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 2 cut(s) 822, 824
MwoI GCNNNNNNNGC 4 cut(s) 375, 614, 832, 989
NciI CCSGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 25, 510, 599, 817
NlaIII CATG 4 cut(s) 259, 301, 492, 728
NlaIV GGNNCC 5 cut(s) 41, 386, 866, 889, 905
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 1 cut(s) 492
PaeI GCATGC 1 cut(s) 492
PauI GCGCGC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 567, 666
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 1 cut(s) 991
PpuMI RGGWCCY 2 cut(s) 39, 865
Psp124BI GAGCTC 1 cut(s) 95
Psp5II RGGWCCY 2 cut(s) 39, 865
Psp6I CCWGG 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 983
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 5 cut(s) 41, 386, 866, 889, 905
PspPI GGNCC 2 cut(s) 39, 865
PspPPI RGGWCCY 2 cut(s) 39, 865
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 510, 599
PteI GCGCGC 1 cut(s) 822
RsaI GTAC 5 cut(s) 61, 141, 303, 322, 464
RsaNI GTAC 5 cut(s) 60, 140, 302, 321, 463
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 182, 216, 270, 429
SatI GCNGC 1 cut(s) 990
Sau3AI GATC 4 cut(s) 25, 510, 599, 817
Sau96I GGNCC 2 cut(s) 39, 865
ScrFI CCNGG 2 cut(s) 11, 497
SduI GDGCHC 2 cut(s) 95, 892
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 1 cut(s) 936
SfcI CTRYAG 2 cut(s) 115, 930
SinI GGWCC 2 cut(s) 39, 865
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 492
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 447
SspMI CTAG 2 cut(s) 348, 456
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 9, 495
TaaI ACNGT 6 cut(s) 241, 437, 530, 547, 563, 623
TaiI ACGT 3 cut(s) 55, 67, 807
TaqI TCGA 4 cut(s) 34, 198, 669, 1014
TasI AATT 1 cut(s) 213
TatI WGTACW 2 cut(s) 59, 462
Tru1I TTAA 4 cut(s) 182, 216, 270, 429
Tru9I TTAA 4 cut(s) 182, 216, 270, 429
TscAI CASTG 2 cut(s) 535, 864
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 989
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 234, 574, 621, 741
TspGWI ACGGA 1 cut(s) 987
TspRI CASTG 2 cut(s) 535, 864
Van91I CCANNNNNTGG 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 39, 865
XceI RCATGY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 914
XspI CTAG 2 cut(s) 348, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.