Rmu_sc0009725.1_g000001

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009725.1
OG0014117
Physical Location & Seq
Forward (+)
1103 .. 6009
4907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009725.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
atgactaaagaggcaatttctgctgggtggcatgctttgttgttggtagttatggctttcttctccgacaacacgaaattttgcactttccctctcatcccaaattacaagtctggagcttgtggctatggagaatatggaaggaccgtaaatgatggtcaagtatctgcagttgctaggctctacagaaatggcactggctgtggtggatgttaccaggttaggtgcatataccctccacattgcagtaatgatggggtgaatgcggtggtgacggactacggcgaaggagacagaactgacttcatcttcagccctagagcctatgcaaagttggcaaacaacccagcttcaacggaggttttatttgcttatggtgtggttgatatagaattcagaagaatcccttgccggtattcttcacccaacctggttttcaaggtccatgaacatagcaaatttcctgaatacttggctatagtcgttcaatatgtagctggccggaatgatatcacagctgttgagttctggcaggaggattgcaaacaatggagcagcatgcgtagagcatatggagcagtatgggacactccaaccccacctaggggttccattgacttgaggttccaagtgagtggcagcgcagggaacaaatgggtgcaggcatccaacgccatccctgctgattggaaggccggggctgcctatacatcagccattcagctcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

243

Amino Acids

26.86

Weight (kDa)

8.07

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 3 cut(s) 77, 392, 458
AcuI CTGAAG 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 603, 604, 605
AgsI TTSAA 3 cut(s) 354, 439, 488
AjnI CCWGG 2 cut(s) 216, 429
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 5 cut(s) 119, 350, 497, 518, 724
AluI AGCT 5 cut(s) 119, 350, 497, 518, 724
Alw26I GTCTC 1 cut(s) 285
AoxI GGCC 2 cut(s) 499, 693
ApeKI GCWGC 3 cut(s) 555, 639, 701
ApoI RAATTY 3 cut(s) 77, 392, 458
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 144, 442
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 3 cut(s) 271, 283, 414
AvaII GGWCC 2 cut(s) 144, 442
AvrII CCTAGG 1 cut(s) 602
BbvI GCAGC 3 cut(s) 567, 651, 688
BccI CCATC 3 cut(s) 149, 248, 683
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 2 cut(s) 218, 431
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 3 cut(s) 177, 318, 603
BfmI CTRYAG 3 cut(s) 168, 184, 477
BisI GCNGC 3 cut(s) 556, 640, 702
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 3 cut(s) 557, 641, 703
Bme1390I CCNGG 3 cut(s) 218, 431, 697
Bme18I GGWCC 2 cut(s) 144, 442
BmgT120I GGNCC 2 cut(s) 144, 442
BmiI GGNNCC 2 cut(s) 610, 626
BmrFI CCNGG 3 cut(s) 218, 431, 697
BmsI GCATC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 602, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 603, 604, 605
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 218, 431
BseDI CCNNGG 2 cut(s) 602, 696
BseGI GGATG 4 cut(s) 96, 215, 665, 675
BseLI CCNNNNNNNGG 3 cut(s) 603, 604, 605
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 567, 651, 688
BseYI CCCAGC 2 cut(s) 23, 346
BsgI GTGCAG 1 cut(s) 680
BshFI GGCC 2 cut(s) 501, 695
BsiSI CCGG 3 cut(s) 412, 502, 696
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 3 cut(s) 603, 604, 605
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 2 cut(s) 501, 695
BspACI CCGC 1 cut(s) 266
BspANI GGCC 2 cut(s) 501, 695
BspLI GGNNCC 2 cut(s) 610, 626
BspMAI CTGCAG 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 602, 696
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 2 cut(s) 218, 431
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 33, 499, 560, 663
BstF5I GGATG 4 cut(s) 96, 215, 665, 675
BstHHI GCGC 1 cut(s) 644
BstMAI GTCTC 1 cut(s) 285
BstMWI GCNNNNNNNGC 6 cut(s) 20, 335, 575, 671, 680, 701
BstNI CCWGG 2 cut(s) 218, 431
BstNSI RCATGY 2 cut(s) 35, 562
BstSCI CCNGG 3 cut(s) 216, 429, 695
BstSFI CTRYAG 3 cut(s) 168, 184, 477
BstV1I GCAGC 3 cut(s) 567, 651, 688
BstXI CCANNNNNNTGG 1 cut(s) 635
BsuRI GGCC 2 cut(s) 501, 695
BtsCI GGATG 4 cut(s) 96, 215, 665, 675
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 4 cut(s) 33, 499, 560, 663
CfoI GCGC 1 cut(s) 644
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 144, 442
CsiI ACCWGGT 2 cut(s) 216, 429
CviAII CATG 3 cut(s) 32, 446, 559
EaeI YGGCCR 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 602
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 144, 442
Eco57I CTGAAG 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 216, 429
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 3 cut(s) 35, 449, 562
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 31, 445, 558
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 556, 640, 702
FokI GGATG 4 cut(s) 83, 222, 652, 662
Fsp4HI GCNGC 3 cut(s) 556, 640, 702
FspBI CTAG 3 cut(s) 177, 318, 603
GlaI GCGC 1 cut(s) 643
GluI GCNGC 3 cut(s) 556, 640, 702
GsaI CCCAGC 2 cut(s) 27, 350
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 501, 695
HapII CCGG 3 cut(s) 412, 502, 696
HhaI GCGC 1 cut(s) 644
Hin1II CATG 3 cut(s) 35, 449, 562
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HinfI GANTC 1 cut(s) 402
HpaII CCGG 3 cut(s) 412, 502, 696
HphI GGTGA 3 cut(s) 271, 283, 414
Hpy188I TCNGA 2 cut(s) 67, 398
Hpy188III TCNNGA 2 cut(s) 114, 464
HpyAV CCTTC 3 cut(s) 135, 281, 685
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 7 cut(s) 84, 170, 228, 246, 329, 543, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 335, 575, 671, 680, 701
Hsp92II CATG 3 cut(s) 35, 449, 562
HspAI GCGC 1 cut(s) 642
LmnI GCTCC 3 cut(s) 116, 552, 575
Lsp1109I GCAGC 3 cut(s) 567, 651, 688
LweI GCATC 1 cut(s) 674
MabI ACCWGGT 2 cut(s) 216, 429
MaeI CTAG 3 cut(s) 177, 318, 603
MaeIII GTNAC 2 cut(s) 212, 271
MboII GAAGA 4 cut(s) 52, 301, 411, 411
MluCI AATT 6 cut(s) 15, 77, 103, 392, 458, 727
MmeI TCCRAC 3 cut(s) 90, 617, 693
MnlI CCTC 6 cut(s) 4, 102, 246, 352, 529, 615
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 412, 502, 696
MspR9I CCNGG 3 cut(s) 218, 431, 697
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 2 cut(s) 218, 431
MwoI GCNNNNNNNGC 6 cut(s) 20, 335, 575, 671, 680, 701
NciI CCSGG 1 cut(s) 697
NdeI CATATG 1 cut(s) 571
NlaIII CATG 3 cut(s) 35, 449, 562
NlaIV GGNNCC 2 cut(s) 610, 626
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 2 cut(s) 35, 562
PaeI GCATGC 2 cut(s) 35, 562
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 557, 641, 703
Psp6I CCWGG 2 cut(s) 216, 429
PspFI CCCAGC 2 cut(s) 23, 346
PspGI CCWGG 2 cut(s) 216, 429
PspN4I GGNNCC 2 cut(s) 610, 626
PspPI GGNCC 2 cut(s) 144, 442
PstI CTGCAG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 518
SatI GCNGC 3 cut(s) 556, 640, 702
Sau96I GGNCC 2 cut(s) 144, 442
ScrFI CCNGG 3 cut(s) 218, 431, 697
SexAI ACCWGGT 2 cut(s) 216, 429
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 3 cut(s) 168, 184, 477
SinI GGWCC 2 cut(s) 144, 442
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SphI GCATGC 2 cut(s) 35, 562
Sse9I AATT 6 cut(s) 15, 77, 103, 392, 458, 727
SsiI CCGC 1 cut(s) 266
SspMI CTAG 3 cut(s) 177, 318, 603
StyD4I CCNGG 3 cut(s) 216, 429, 695
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 1 cut(s) 148
TasI AATT 6 cut(s) 15, 77, 103, 392, 458, 727
TfiI GAWTC 1 cut(s) 402
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 3 cut(s) 555, 639, 701
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 295, 462
TspGWI ACGGA 2 cut(s) 290, 371
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 144, 442
XapI RAATTY 3 cut(s) 77, 392, 458
XceI RCATGY 2 cut(s) 35, 562
XmaJI CCTAGG 1 cut(s) 602
XspI CTAG 3 cut(s) 177, 318, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.