Rh7BG217200

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014117
Physical Location & Seq
Reverse (-)
18558627 .. 18565446
6820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG217200.1

Sequence Viewer

Length: 804 bp
ATGCAAGTTTATGAGATGACTGGCTTCTTCAGTACTGGAGCAAGAGTTTGCACCATTCACAAAAAAACCAGTGTTAAAGCTGCAAGTGGCCTAGTGCTCTTGCCAACACTATGCACCTCTCAAGATACATTTACACGCTCCAGAGCAACCTATTATGGTAGCCCTGATTGCTATGGAACCCAAACTGGAGCTTGTGGCTATGGAGAATATGGAAGGACCGTAAATGATGGTCAAGTATCTGCAGTTGCTAGGCTCTACAGAAATGGCACTGGCTGTGGTGGATGTTACCAGGTTAGATGCACATACCCTTCACATTGCAGTAATGATGGGGTGAATGCGGTGGTGACTGACTACGGCGAAGGAGACAGAACTGACTTCATCTTCAGCCCTAGAGCCTATGCAAAGTTGGCAAACAACCCAGATTCAACGGAGGTTTTATTTAATTATGGTGTGGTTGATATAGAATTCAGAAGAATCCCTTGCCGGTATTCTACACCCAACCTGGTTTTCAAGGTCCATGAACATAGCAAATTTCCTGAATACTTGGCTATAGTCGTTCAATATGTAGCTGGCCGGAATGATATCACAGCTGTTGAGTTCTGGCAGGAGGATTGCAAACAATGGAGCAGCATGCGTAGAGCATATGGAGCAGTATGGGACACTCCAACCCCACCTAGGCGTTCCATTGACATGAGGTTCCAAGTGAGTGGCAGCTCAGGGATCAAATGGGTGCAGGCATCCAACGCCATCCCTGCTGATTGGAAGGCCGGGGCTGCCTATACATCAGCCATTCAGCTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

267

Amino Acids

29.56

Weight (kDa)

8.47

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 81 - 155 3.7e-09 Lytic transglycolase
Expansin_C PF01357 170 - 251 9.9e-21 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 2 cut(s) 464, 530
AcuI CTGAAG 2 cut(s) 13, 367
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 3 cut(s) 426, 511, 560
AjnI CCWGG 2 cut(s) 288, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 6 cut(s) 80, 191, 569, 590, 714, 796
AluI AGCT 6 cut(s) 80, 191, 569, 590, 714, 796
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 1 cut(s) 728
AoxI GGCC 3 cut(s) 88, 571, 765
ApeKI GCWGC 4 cut(s) 80, 627, 711, 773
ApoI RAATTY 2 cut(s) 464, 530
AspA2I CCTAGG 1 cut(s) 674
AspS9I GGNCC 2 cut(s) 216, 514
AsuC2I CCSGG 1 cut(s) 769
AsuHPI GGTGA 2 cut(s) 343, 355
AvaII GGWCC 2 cut(s) 216, 514
AvrII CCTAGG 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 67, 639, 723, 760
BccI CCATC 3 cut(s) 221, 320, 755
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 290, 503
BcnI CCSGG 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 4 cut(s) 92, 249, 390, 675
BfmI CTRYAG 3 cut(s) 240, 256, 549
BisI GCNGC 4 cut(s) 81, 628, 712, 774
BlnI CCTAGG 1 cut(s) 674
BlsI GCNGC 4 cut(s) 82, 629, 713, 775
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 3 cut(s) 290, 503, 769
Bme18I GGWCC 2 cut(s) 216, 514
BmgT120I GGNCC 2 cut(s) 216, 514
BmiI GGNNCC 2 cut(s) 178, 698
BmrFI CCNGG 3 cut(s) 290, 503, 769
BmsI GCATC 2 cut(s) 287, 746
BpmI CTGGAG 3 cut(s) 57, 124, 207
Bpu10I CCTNAGC 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 674, 768
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 483
Bse1I ACTGG 5 cut(s) 25, 40, 69, 190, 274
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 290, 503
BseDI CCNNGG 2 cut(s) 674, 768
BseGI GGATG 3 cut(s) 287, 737, 747
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 5 cut(s) 25, 40, 69, 190, 274
BseXI GCAGC 4 cut(s) 67, 639, 723, 760
BsgI GTGCAG 1 cut(s) 752
BshFI GGCC 3 cut(s) 90, 573, 767
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 484, 574, 768
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 3 cut(s) 90, 573, 767
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 720
BspACI CCGC 1 cut(s) 338
BspANI GGCC 3 cut(s) 90, 573, 767
BspCNI CTCAG 1 cut(s) 728
BspLI GGNNCC 2 cut(s) 178, 698
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 483
BsrI ACTGG 5 cut(s) 25, 40, 69, 190, 274
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 674, 768
BssMI GATC 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 674
Bst2UI CCWGG 2 cut(s) 290, 503
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 571, 632, 735
BstDEI CTNAG 1 cut(s) 715
BstF5I GGATG 3 cut(s) 287, 737, 747
BstKTI GATC 1 cut(s) 723
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 1 cut(s) 720
BstMWI GCNNNNNNNGC 6 cut(s) 168, 407, 647, 743, 752, 773
BstNI CCWGG 2 cut(s) 290, 503
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 288, 501, 767
BstSFI CTRYAG 3 cut(s) 240, 256, 549
BstV1I GCAGC 4 cut(s) 67, 639, 723, 760
BstXI CCANNNNNNTGG 1 cut(s) 707
BsuRI GGCC 3 cut(s) 90, 573, 767
BtsCI GGATG 3 cut(s) 287, 737, 747
BtsIMutI CAGTG 2 cut(s) 76, 267
Cac8I GCNNGC 3 cut(s) 571, 632, 735
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 216, 514
CsiI ACCWGGT 2 cut(s) 288, 501
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 518, 631, 691
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 715
DpnI GATC 1 cut(s) 722
DpnII GATC 1 cut(s) 720
EaeI YGGCCR 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 674
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 216, 514
Eco57I CTGAAG 2 cut(s) 13, 367
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 288, 501
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 674
ErhI CCWWGG 1 cut(s) 674
FaeI CATG 3 cut(s) 521, 634, 694
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 1 cut(s) 671
FatI CATG 3 cut(s) 517, 630, 690
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 4 cut(s) 81, 628, 712, 774
FokI GGATG 3 cut(s) 294, 724, 734
Fsp4HI GCNGC 4 cut(s) 81, 628, 712, 774
FspBI CTAG 4 cut(s) 92, 249, 390, 675
GluI GCNGC 4 cut(s) 81, 628, 712, 774
GsuI CTGGAG 3 cut(s) 57, 124, 207
HaeIII GGCC 3 cut(s) 90, 573, 767
HapII CCGG 3 cut(s) 484, 574, 768
Hin1II CATG 3 cut(s) 521, 634, 694
HinfI GANTC 2 cut(s) 422, 474
HpaII CCGG 3 cut(s) 484, 574, 768
HphI GGTGA 2 cut(s) 343, 355
Hpy188I TCNGA 1 cut(s) 470
Hpy188III TCNNGA 3 cut(s) 122, 141, 536
HpyAV CCTTC 4 cut(s) 207, 318, 353, 757
HpyCH4III ACNGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 407, 647, 743, 752, 773
HpyF3I CTNAG 1 cut(s) 715
Hsp92II CATG 3 cut(s) 521, 634, 694
Kzo9I GATC 1 cut(s) 720
LmnI GCTCC 5 cut(s) 38, 143, 188, 624, 647
Lsp1109I GCAGC 4 cut(s) 67, 639, 723, 760
LweI GCATC 2 cut(s) 287, 746
MabI ACCWGGT 2 cut(s) 288, 501
MaeI CTAG 4 cut(s) 92, 249, 390, 675
MaeIII GTNAC 2 cut(s) 284, 343
MalI GATC 1 cut(s) 722
MboI GATC 1 cut(s) 720
MboII GAAGA 3 cut(s) 19, 373, 483
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 4 cut(s) 442, 464, 530, 799
MmeI TCCRAC 2 cut(s) 689, 765
MnlI CCTC 4 cut(s) 127, 424, 601, 687
MseI TTAA 2 cut(s) 75, 441
MslI CAYNNNNRTG 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 3 cut(s) 484, 574, 768
MspR9I CCNGG 3 cut(s) 290, 503, 769
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 2 cut(s) 290, 503
MwoI GCNNNNNNNGC 6 cut(s) 168, 407, 647, 743, 752, 773
NciI CCSGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 643
NdeII GATC 1 cut(s) 720
NlaIII CATG 3 cut(s) 521, 634, 694
NlaIV GGNNCC 2 cut(s) 178, 698
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 634
PaeI GCATGC 1 cut(s) 634
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 422, 474
PkrI GCNGC 4 cut(s) 82, 629, 713, 775
Psp6I CCWGG 2 cut(s) 288, 501
PspGI CCWGG 2 cut(s) 288, 501
PspN4I GGNNCC 2 cut(s) 178, 698
PspPI GGNCC 2 cut(s) 216, 514
PstI CTGCAG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 2 cut(s) 75, 441
SatI GCNGC 4 cut(s) 81, 628, 712, 774
Sau3AI GATC 1 cut(s) 720
Sau96I GGNCC 2 cut(s) 216, 514
ScaI AGTACT 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 290, 503, 769
SduI GDGCHC 1 cut(s) 99
SexAI ACCWGGT 2 cut(s) 288, 501
SfaNI GCATC 2 cut(s) 287, 746
SfcI CTRYAG 3 cut(s) 240, 256, 549
SinI GGWCC 2 cut(s) 216, 514
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
SphI GCATGC 1 cut(s) 634
Sse9I AATT 4 cut(s) 442, 464, 530, 799
SsiI CCGC 1 cut(s) 338
SspMI CTAG 4 cut(s) 92, 249, 390, 675
StyD4I CCNGG 3 cut(s) 288, 501, 767
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 1 cut(s) 220
TasI AATT 4 cut(s) 442, 464, 530, 799
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 2 cut(s) 422, 474
Tru1I TTAA 2 cut(s) 75, 441
Tru9I TTAA 2 cut(s) 75, 441
TscAI CASTG 2 cut(s) 76, 274
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 4 cut(s) 80, 627, 711, 773
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 367, 534
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 2 cut(s) 76, 274
VpaK11BI GGWCC 2 cut(s) 216, 514
XapI RAATTY 2 cut(s) 464, 530
XceI RCATGY 1 cut(s) 634
XmaJI CCTAGG 1 cut(s) 674
XspI CTAG 4 cut(s) 92, 249, 390, 675
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.