Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014117

Physical Location & Seq

Genomic Coordinates Reverse (-)

6196277 .. 6197888

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1052600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGTTTTTCCTTAAGGACATAACTTGGTTTCTTTGTATCATGTTACTGTTGCCTGCACTATGTACCTCTCAAGACGCATTTGTTTCCTCTAGAGCAACCTACTATGGTAGCCCAGACTGCTACGGGACCCCAACTGGAGCTTGTGGGTTTGGAGAATATGGAAGAAAGATCAACGACGGTCAAGTAACCGCAGTTTCTGGGCTGTGGAGGAACGGAACTGGCTGTGGTGCATGCTACCAGGTGAGGTGCAAGGTCCCTCAGCATTGCAGCAGTGATGGGGTAACTGCGGCGGTGACTGACTACGGCGAAGGCGACAGAACTGACTTTATCTTCAGCGCAAGAGCTTATGCAAAGTTGGCAACCAATCCAGCTTCGTCTGAGGTATTATTTGCTTCCGGTGTCGTTGAAATCGAATACAGAAGGATCCCTTGCAAGTTCTCTGGTAACAACATTGTGTTTAAAGTCCATGAACACAGTAAATATCCTCAATACCTTGCCATAGTCATTCAGGATGTTGCTGGGGTAAATGACATAACAGCTGTTGAGGTTTGGCAGGAGGATTGCCAGCAATGGAGGCCAATGAGGAGAGCATATGGAGCAGTGTGGGACCTTCCAACCCCACCAATGGGGTCCCTTAGCTTGAGGTTCCAAGTGAGTGGCAGTGCAGAGGTGAAATGGGTGCAGGCAAACAAAGTCATCCCTGCTGATTGGAAGGCTGGGGCTGCCTATCAGTCGGACATTCAGCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

252

Amino Acids

27.65

Weight (kDa)

5.93

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	68 - 140	1.3e-08	Lytic transglycolase
Expansin_C	PF01357	152 - 235	1.2e-22	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17030
fragaria_vesca	FvH4_5g20290
malus_domestica	MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica	Prupe.5G057900_v2.0.a1
pyrus_communis	pycom06g04050
rosa_chinensis	RchiOBHm_Chr7g0205401
rosa_laevigata	RLG00000003384
rosa_multiflora	Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252410
rosa_rugosa	Rorug07G0091000
rosa_samantha	Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana	Rw7G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	192, 290, 293
AclWI	GGATC	2 cut(s)	421, 434
AcuI	CTGAAG	1 cut(s)	319
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	628, 629
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	6 cut(s)	143, 347, 374, 542, 642, 748
AluI	AGCT	6 cut(s)	143, 347, 374, 542, 642, 748
AlwI	GGATC	2 cut(s)	421, 434
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	270, 725
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	4 cut(s)	129, 256, 610, 633
AsuHPI	GGTGA	3 cut(s)	256, 307, 685
AvaII	GGWCC	4 cut(s)	129, 256, 610, 633
BamHI	GGATCC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	282, 712
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	242
BfaI	CTAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	3 cut(s)	271, 291, 726
BlsI	GCNGC	3 cut(s)	272, 292, 727
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	4 cut(s)	129, 256, 610, 633
BmgT120I	GGNCC	4 cut(s)	129, 256, 610, 633
BmiI	GGNNCC	8 cut(s)	130, 131, 258, 428, 611, 634, 635, 650
BmrFI	CCNGG	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	2 cut(s)	261, 638
BpuEI	CTTGAG	2 cut(s)	57, 664
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 629
Bse1I	ACTGG	2 cut(s)	142, 226
Bse3DI	GCAATG	2 cut(s)	265, 578
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	520, 699
BseLI	CCNNNNNNNGG	2 cut(s)	628, 629
BseMI	GCAATG	2 cut(s)	265, 578
BseMII	CTCAG	2 cut(s)	275, 372
BseNI	ACTGG	2 cut(s)	142, 226
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	2 cut(s)	282, 712
BseYI	CCCAGC	2 cut(s)	521, 719
BsgI	GTGCAG	3 cut(s)	42, 687, 704
BshFI	GGCC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	4 cut(s)	142, 242, 619, 623
BslI	CCNNNNNNNGG	2 cut(s)	628, 629
BsmFI	GGGAC	4 cut(s)	142, 242, 619, 623
BsnI	GGCC	1 cut(s)	580
Bsp143I	GATC	2 cut(s)	171, 426
BspACI	CCGC	3 cut(s)	192, 290, 293
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	274, 373
BspLI	GGNNCC	8 cut(s)	130, 131, 258, 428, 611, 634, 635, 650
BspPI	GGATC	2 cut(s)	421, 434
BspTI	CTTAAG	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	265, 578
BsrI	ACTGG	2 cut(s)	142, 226
BssMI	GATC	2 cut(s)	171, 426
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	51, 182, 479
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	57, 235, 569, 687
BstDEI	CTNAG	3 cut(s)	261, 381, 638
BstF5I	GGATG	2 cut(s)	520, 699
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	174, 429
BstMBI	GATC	2 cut(s)	171, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 359, 577, 599, 725
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	282, 712
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	520, 699
BtsI	GCAGTG	3 cut(s)	280, 609, 670
BtsIMutI	CAGTG	3 cut(s)	280, 609, 670
Cac8I	GCNNGC	4 cut(s)	57, 235, 569, 687
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	4 cut(s)	129, 256, 610, 633
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	3 cut(s)	43, 234, 470
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	3 cut(s)	261, 381, 638
DpnI	GATC	2 cut(s)	173, 428
DpnII	GATC	2 cut(s)	171, 426
DraI	TTTAAA	1 cut(s)	463
Eco47I	GGWCC	4 cut(s)	129, 256, 610, 633
Eco57I	CTGAAG	1 cut(s)	319
EcoO109I	RGGNCCY	4 cut(s)	129, 256, 610, 633
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	46, 237, 473
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FaqI	GGGAC	4 cut(s)	142, 242, 619, 623
FatI	CATG	3 cut(s)	42, 233, 469
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	271, 291, 726
FokI	GGATG	2 cut(s)	527, 686
Fsp4HI	GCNGC	3 cut(s)	271, 291, 726
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	3 cut(s)	271, 291, 726
GsaI	CCCAGC	2 cut(s)	525, 723
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	46, 237, 473
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	256, 307, 685
Hpy188I	TCNGA	2 cut(s)	382, 739
Hpy188III	TCNNGA	3 cut(s)	74, 93, 512
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	305, 417, 623, 709
HpyCH4III	ACNGT	3 cut(s)	51, 182, 479
HpyCH4V	TGCA	8 cut(s)	59, 233, 252, 270, 353, 435, 668, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 359, 577, 599, 725
HpyF3I	CTNAG	3 cut(s)	261, 381, 638
Hsp92II	CATG	3 cut(s)	46, 237, 473
HspAI	GCGC	1 cut(s)	339
KflI	GGGWCCC	2 cut(s)	129, 633
Kzo9I	GATC	2 cut(s)	171, 426
LmnI	GCTCC	2 cut(s)	140, 599
Lsp1109I	GCAGC	2 cut(s)	282, 712
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	5 cut(s)	45, 187, 283, 295, 446
MalI	GATC	2 cut(s)	173, 428
MboI	GATC	2 cut(s)	171, 426
MboII	GAAGA	2 cut(s)	177, 325
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	1 cut(s)	751
MmeI	TCCRAC	2 cut(s)	641, 717
MseI	TTAA	2 cut(s)	15, 462
MspA1I	CMGCKG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	120, 359, 577, 599, 725
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	2 cut(s)	171, 426
NlaIII	CATG	3 cut(s)	46, 237, 473
NlaIV	GGNNCC	8 cut(s)	130, 131, 258, 428, 611, 634, 635, 650
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 411
PkrI	GCNGC	3 cut(s)	272, 292, 727
PpuMI	RGGWCCY	4 cut(s)	129, 256, 610, 633
Psp5II	RGGWCCY	4 cut(s)	129, 256, 610, 633
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	2 cut(s)	521, 719
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	8 cut(s)	130, 131, 258, 428, 611, 634, 635, 650
PspPI	GGNCC	4 cut(s)	129, 256, 610, 633
PspPPI	RGGWCCY	4 cut(s)	129, 256, 610, 633
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	15, 462
SatI	GCNGC	3 cut(s)	271, 291, 726
Sau3AI	GATC	2 cut(s)	171, 426
Sau96I	GGNCC	4 cut(s)	129, 256, 610, 633
ScrFI	CCNGG	1 cut(s)	242
SexAI	ACCWGGT	1 cut(s)	240
SinI	GGWCC	4 cut(s)	129, 256, 610, 633
SmlI	CTYRAG	3 cut(s)	14, 72, 643
SmoI	CTYRAG	3 cut(s)	14, 72, 643
SphI	GCATGC	1 cut(s)	237
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	3 cut(s)	192, 290, 293
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	51, 182, 479
TaqI	TCGA	1 cut(s)	414
TasI	AATT	1 cut(s)	751
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	15, 462
Tru9I	TTAA	2 cut(s)	15, 462
TscAI	CASTG	3 cut(s)	280, 609, 670
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	270, 725
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	3 cut(s)	280, 609, 670
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	4 cut(s)	129, 256, 610, 633
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.