Prupe.5G057900_v2.0.a1

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014117
Physical Location & Seq
Forward (+)
6263459 .. 6265439
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G057900.1

Sequence Viewer

Length: 759 bp
ATGGAATTTTCCCTTAAGCACAAAATTTGTTTTCTTTGTATCATGGTGCTCTTGCCTGCACTGTGTACCTCTCAAGACACATTTACAAGCTCTAGAGCAACCTATTATGGTAGCCCAGATTGCTATGGGACCCCAACTGGAGCTTGTGGCTATGGAGAATATGGAAGGACAGTCAACGACGGCCAAGTGGCCGCAGTTGCTAGGCTGTATCGGAATGGAACTGGCTGTGGTGCATGTTACCAGGTTAGGTGCAGAGAACCTCAACATTGCAGTAGTGATGGGGTGAATGCGGTGGTGACAGATTATGGGGAAGGAGACAGAACAGACTTCATCTTCAGCCGAAGAGCCTATGCAAAGTTGGCAAGTAACCCAGCTGCAGCTGAAAGGCTATTTGCTTATGGTGTGGTTGAAATTGAATACAGAAGGATCCCCTGCCGGTTCTCTGGTCGTGCCAACCTTGAGTTCAAAGTCCATGAACAGAGCAGATATCCTGACTATTTGGCTATAGTGATTCAATATGTAGCTGGCCAAAATGACATCATATCTGTTGAGTTGTGGCAGGAGGATTGCAAACAATGGAGGGCCATGCGCAGAGCATATGGAGCAGTTTTTGACACTCCAAACCCACCTAGTGGCTCCCTTAACTTGAGGTTCCTAGTGAGTGGCAGTGCAGGGGTGAAATTCGTGCAGGCAAACCAAGTCATCCCTGGAGACTGGAAAGCTGGGGTTTCCTATGAGACAGACATTCAGCTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.98

Weight (kDa)

7.46

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17030
fragaria_vesca FvH4_5g20290
malus_domestica MD04G1052600.v1.1 MD06G1047600.v1.1
prunus_persica Prupe.5G057900_v2.0.a1
pyrus_communis pycom06g04050
rosa_chinensis RchiOBHm_Chr7g0205401
rosa_laevigata RLG00000003384
rosa_multiflora Rmu_sc0009725.1_g000001 Rmu_ssc0000004.1_g000008
rosa_roxburghii Rroxscaffold_3G00252410
rosa_rugosa Rorug07G0091000
rosa_samantha Rh7AG220900 Rh7BG217200 Rh7CG234000 Rh7DG227900
rosa_wichuraiana Rw7G019090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 632
AciI CCGC 2 cut(s) 192, 290
AclWI GGATC 2 cut(s) 421, 434
AcoI YGGCCR 3 cut(s) 181, 189, 526
AcsI RAATTY 3 cut(s) 5, 24, 680
AcuI CTGAAG 1 cut(s) 319
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 632
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 410, 416, 466, 515
AjnI CCWGG 2 cut(s) 240, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 7 cut(s) 90, 143, 374, 380, 524, 722, 751
AluI AGCT 7 cut(s) 90, 143, 374, 380, 524, 722, 751
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 3 cut(s) 309, 705, 731
AlwI GGATC 2 cut(s) 421, 434
AoxI GGCC 4 cut(s) 181, 189, 526, 582
ApeKI GCWGC 2 cut(s) 374, 377
ApoI RAATTY 3 cut(s) 5, 24, 680
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 129, 582
AsuHPI GGTGA 3 cut(s) 295, 307, 688
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 528
BamHI GGATCC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 361, 389
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 242, 708
BcoDI GTCTC 3 cut(s) 309, 705, 731
BfaI CTAG 4 cut(s) 93, 201, 630, 656
BfmI CTRYAG 2 cut(s) 375, 504
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 3 cut(s) 192, 375, 378
BlsI GCNGC 3 cut(s) 193, 376, 379
Bme1390I CCNGG 2 cut(s) 242, 708
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 129, 582
BmiI GGNNCC 5 cut(s) 130, 131, 428, 637, 653
BmrFI CCNGG 2 cut(s) 242, 708
BpmI CTGGAG 2 cut(s) 159, 729
BpuEI CTTGAG 3 cut(s) 57, 479, 667
BsaJI CCNNGG 1 cut(s) 706
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 3 cut(s) 142, 226, 719
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 2 cut(s) 242, 708
BseDI CCNNGG 1 cut(s) 706
BseGI GGATG 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 3 cut(s) 142, 226, 719
BseXI GCAGC 2 cut(s) 361, 389
BseYI CCCAGC 2 cut(s) 370, 722
BsgI GTGCAG 4 cut(s) 42, 271, 690, 707
BshFI GGCC 4 cut(s) 183, 191, 528, 584
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 3 cut(s) 309, 705, 731
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 4 cut(s) 183, 191, 528, 584
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 426
BspACI CCGC 2 cut(s) 192, 290
BspANI GGCC 4 cut(s) 183, 191, 528, 584
BspLI GGNNCC 5 cut(s) 130, 131, 428, 637, 653
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 421, 434
BspQI GCTCTTC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 3 cut(s) 142, 226, 719
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 706
BssMI GATC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 242, 708
Bst4CI ACNGT 2 cut(s) 63, 172
Bst6I CTCTTC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 57, 526, 690
BstF5I GGATG 1 cut(s) 702
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 1 cut(s) 429
BstMAI GTCTC 3 cut(s) 309, 705, 731
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 4 cut(s) 120, 197, 359, 602
BstNI CCWGG 2 cut(s) 242, 708
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 240, 706
BstSFI CTRYAG 2 cut(s) 375, 504
BstV1I GCAGC 2 cut(s) 361, 389
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 4 cut(s) 183, 191, 528, 584
BtsCI GGATG 1 cut(s) 702
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 59, 673
Cac8I GCNNGC 3 cut(s) 57, 526, 690
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 129, 582
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 1 cut(s) 66
CviAII CATG 4 cut(s) 43, 234, 473, 586
CviQI GTAC 1 cut(s) 66
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 3 cut(s) 181, 189, 526
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 240, 706
EcoRV GATATC 1 cut(s) 488
FaeI CATG 4 cut(s) 46, 237, 476, 589
FaqI GGGAC 1 cut(s) 142
FatI CATG 4 cut(s) 42, 233, 472, 585
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 3 cut(s) 192, 375, 378
FokI GGATG 1 cut(s) 689
Fsp4HI GCNGC 3 cut(s) 192, 375, 378
FspBI CTAG 4 cut(s) 93, 201, 630, 656
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 1 cut(s) 590
GluI GCNGC 3 cut(s) 192, 375, 378
GsaI CCCAGC 2 cut(s) 374, 726
GsuI CTGGAG 2 cut(s) 159, 729
HaeIII GGCC 4 cut(s) 183, 191, 528, 584
HapII CCGG 1 cut(s) 436
HhaI GCGC 1 cut(s) 591
Hin1II CATG 4 cut(s) 46, 237, 476, 589
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 511
HpaII CCGG 1 cut(s) 436
HphI GGTGA 3 cut(s) 295, 307, 688
Hpy166II GTNNAC 2 cut(s) 66, 175
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 3 cut(s) 74, 93, 491
Hpy8I GTNNAC 2 cut(s) 66, 175
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 159, 305, 417
HpyCH4III ACNGT 2 cut(s) 63, 172
HpyCH4V TGCA 9 cut(s) 59, 233, 252, 270, 353, 377, 570, 671, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 197, 359, 602
Hsp92II CATG 4 cut(s) 46, 237, 476, 589
HspAI GCGC 1 cut(s) 589
KflI GGGWCCC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 426
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 3 cut(s) 140, 602, 641
Lsp1109I GCAGC 2 cut(s) 361, 389
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 4 cut(s) 93, 201, 630, 656
MaeIII GTNAC 3 cut(s) 236, 295, 365
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 2 cut(s) 325, 354
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 5, 24, 411, 680, 754
MluNI TGGCCA 1 cut(s) 528
MnlI CCTC 5 cut(s) 79, 270, 556, 573, 642
Mox20I TGGCCA 1 cut(s) 528
MscI TGGCCA 1 cut(s) 528
MseI TTAA 3 cut(s) 15, 642, 757
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 2 cut(s) 374, 380
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 2 cut(s) 242, 708
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 242, 708
MwoI GCNNNNNNNGC 4 cut(s) 120, 197, 359, 602
NdeI CATATG 1 cut(s) 598
NdeII GATC 1 cut(s) 426
NlaIII CATG 4 cut(s) 46, 237, 476, 589
NlaIV GGNNCC 5 cut(s) 130, 131, 428, 637, 653
NmuCI GTSAC 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 590
NspI RCATGY 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 337
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 632
PkrI GCNGC 3 cut(s) 193, 376, 379
PpuMI RGGWCCY 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 240, 706
PspFI CCCAGC 2 cut(s) 370, 722
PspGI CCWGG 2 cut(s) 240, 706
PspN4I GGNNCC 5 cut(s) 130, 131, 428, 637, 653
PspPI GGNCC 2 cut(s) 129, 582
PspPPI RGGWCCY 1 cut(s) 129
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 426
PvuII CAGCTG 2 cut(s) 374, 380
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 15, 642, 757
SatI GCNGC 3 cut(s) 192, 375, 378
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 2 cut(s) 129, 582
ScrFI CCNGG 2 cut(s) 242, 708
SduI GDGCHC 1 cut(s) 51
SexAI ACCWGGT 1 cut(s) 240
SfcI CTRYAG 2 cut(s) 375, 504
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 4 cut(s) 14, 72, 458, 646
SmoI CTYRAG 4 cut(s) 14, 72, 458, 646
Sse9I AATT 5 cut(s) 5, 24, 411, 680, 754
SsiI CCGC 2 cut(s) 192, 290
SspMI CTAG 4 cut(s) 93, 201, 630, 656
StyD4I CCNGG 2 cut(s) 240, 706
TaaI ACNGT 2 cut(s) 63, 172
TasI AATT 5 cut(s) 5, 24, 411, 680, 754
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 3 cut(s) 15, 642, 757
Tru9I TTAA 3 cut(s) 15, 642, 757
TscAI CASTG 2 cut(s) 66, 673
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 319, 489
TspRI CASTG 2 cut(s) 66, 673
Van91I CCANNNNNTGG 1 cut(s) 632
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 3 cut(s) 5, 24, 680
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XspI CTAG 4 cut(s) 93, 201, 630, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.