Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Forward (+)

9589501 .. 9592590

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCGATCACTTTACTTAATCGTCTTCATCGTTATTAGTCTTGTTAAAGCTTCGAAAAGCGATGATGGGTTTTGTTCAGCGCCTTCGATTGTTGAATCGGATGAGAAGACGAACCCCATTTATTGGAAAGCCACGAATCCAACACTCTCTCCTTCACACCTCCAAGACTTGCCTGGTTTCACACGAAGTGTATACAAACGAGATCATGCGTTAATAACACCGGAAAGTCATGTATACAGCCCTTTACCTGACTGGACAAACACATTAGGGGCGTATTTGATCACACCGGCAACGGGTTCCCATTTTGTCATGTACTTGGCGAAAATGAAAGAAATGTCAAGTTCAGGTTTGCCTCCACAAGACATAGAGCGTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGTTCTTCAAAAAAATTGACGGTTGATTCATATGCGTACCTACCTCCAAACTTTCACCATTCCTTGGACTGTGTTGAGTCTGCAACACTTGTTGTCTTCGAGCGGAGGTATGAATATCTAGGAAGTCACACCACAGAGCTTATTGTTGGCTCCACAGACAAGCAACCACTACTCGAGACTCCTGGTGAGGTTTTTGAACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCATACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGAAGTTCATTATAACCAGCATGGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGGTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

298

Amino Acids

33.67

Weight (kDa)

5.92

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_2	PF07883	222 - 288	3.5e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AccB7I	CCANNNNNTGG	3 cut(s)	123, 481, 667
AccBSI	CCGCTC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	192, 234
AciI	CCGC	2 cut(s)	520, 619
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	3 cut(s)	314, 455, 869
AfiI	CCNNNNNNNGG	4 cut(s)	123, 293, 481, 667
AgsI	TTSAA	4 cut(s)	95, 426, 614, 655
AjnI	CCWGG	3 cut(s)	172, 598, 679
AluBI	AGCT	2 cut(s)	50, 556
AluI	AGCT	2 cut(s)	50, 556
Alw26I	GTCTC	2 cut(s)	587, 858
Ama87I	CYCGRG	1 cut(s)	590
ApeKI	GCWGC	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	464, 614, 776, 803
AsuII	TTCGAA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	590
BbsI	GAAGAC	3 cut(s)	16, 113, 505
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	2 cut(s)	59, 799
BciT130I	CCWGG	3 cut(s)	174, 600, 681
BciVI	GTATCC	1 cut(s)	786
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	587, 858
BfaI	CTAG	2 cut(s)	536, 849
BfoI	RGCGCY	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
Bme1390I	CCNGG	3 cut(s)	174, 600, 681
BmeT110I	CYCGRG	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	298, 568, 810
BmrFI	CCNGG	3 cut(s)	174, 600, 681
BpiI	GAAGAC	3 cut(s)	16, 113, 505
BpmI	CTGGAG	2 cut(s)	702, 758
Bpu14I	TTCGAA	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 293, 481, 667
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	4 cut(s)	257, 417, 776, 779
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	3 cut(s)	174, 600, 681
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	106, 413, 657, 810
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	4 cut(s)	123, 293, 481, 667
BseNI	ACTGG	4 cut(s)	257, 417, 776, 779
BseXI	GCAGC	1 cut(s)	820
BsgI	GTGCAG	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	221, 287
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	4 cut(s)	123, 293, 481, 667
BsmAI	GTCTC	2 cut(s)	587, 858
BsmFI	GGGAC	1 cut(s)	803
Bso31I	GGTCTC	1 cut(s)	858
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	3 cut(s)	5, 202, 279
BspACI	CCGC	2 cut(s)	520, 619
BspLI	GGNNCC	3 cut(s)	298, 568, 810
BspT104I	TTCGAA	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	858
BsrBI	CCGCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	4 cut(s)	257, 417, 776, 779
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	5, 202, 279
BssNAI	GTATAC	2 cut(s)	193, 235
BssT1I	CCWWGG	1 cut(s)	480
Bst1107I	GTATAC	2 cut(s)	193, 235
Bst2UI	CCWGG	3 cut(s)	174, 600, 681
Bst4CI	ACNGT	2 cut(s)	439, 488
BstAUI	TGTACA	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	106, 413, 657, 810
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	8, 205, 282
BstMAI	GTCTC	2 cut(s)	587, 858
BstMBI	GATC	3 cut(s)	5, 202, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	756
BstNI	CCWGG	3 cut(s)	174, 600, 681
BstSCI	CCNGG	3 cut(s)	172, 598, 679
BstV1I	GCAGC	1 cut(s)	820
BstV2I	GAAGAC	3 cut(s)	16, 113, 505
BstZ17I	GTATAC	2 cut(s)	193, 235
BsuI	GTATCC	1 cut(s)	786
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	106, 413, 657, 810
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	286
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	313, 454, 868
CviAII	CATG	4 cut(s)	206, 230, 310, 722
CviJI	RGCY	8 cut(s)	50, 131, 240, 556, 567, 679, 788, 809
CviKI_1	RGCY	8 cut(s)	50, 131, 240, 556, 567, 679, 788, 809
CviQI	GTAC	3 cut(s)	313, 454, 868
DpnI	GATC	3 cut(s)	7, 204, 281
DpnII	GATC	3 cut(s)	5, 202, 279
DraIII	CACNNNGTG	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	172, 598, 679
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	4 cut(s)	209, 233, 313, 725
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	4 cut(s)	205, 229, 309, 721
FauNDI	CATATG	2 cut(s)	448, 800
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	192, 234
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	4 cut(s)	113, 400, 644, 817
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	2 cut(s)	536, 849
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	834
GsuI	CTGGAG	2 cut(s)	702, 758
HaeII	RGCGCY	1 cut(s)	83
HapII	CCGG	2 cut(s)	221, 287
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	209, 233, 313, 725
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	6 cut(s)	95, 136, 443, 494, 595, 880
HpaII	CCGG	2 cut(s)	221, 287
HphI	GGTGA	4 cut(s)	464, 614, 776, 803
Hpy166II	GTNNAC	2 cut(s)	193, 235
Hpy188I	TCNGA	4 cut(s)	100, 633, 693, 842
Hpy188III	TCNNGA	2 cut(s)	592, 737
Hpy8I	GTNNAC	2 cut(s)	193, 235
HpyAV	CCTTC	2 cut(s)	93, 162
HpyCH4III	ACNGT	2 cut(s)	439, 488
HpyCH4V	TGCA	2 cut(s)	500, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	209, 233, 313, 725
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	5, 202, 279
LmnI	GCTCC	2 cut(s)	572, 814
Lsp1109I	GCAGC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	536, 849
MaeIII	GTNAC	2 cut(s)	397, 542
MalI	GATC	3 cut(s)	7, 204, 281
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	3 cut(s)	5, 202, 279
MboII	GAAGA	5 cut(s)	16, 118, 414, 505, 620
MluCI	AATT	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	503, 589
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	170, 363, 382, 471, 516, 598, 733, 831
MseI	TTAA	4 cut(s)	17, 45, 212, 699
MslI	CAYNNNNRTG	1 cut(s)	803
MspI	CCGG	2 cut(s)	221, 287
MspR9I	CCNGG	3 cut(s)	174, 600, 681
MvaI	CCWGG	3 cut(s)	174, 600, 681
MwoI	GCNNNNNNNGC	1 cut(s)	756
NdeI	CATATG	2 cut(s)	448, 800
NdeII	GATC	3 cut(s)	5, 202, 279
NlaIII	CATG	4 cut(s)	209, 233, 313, 725
NlaIV	GGNNCC	3 cut(s)	298, 568, 810
NmuCI	GTSAC	2 cut(s)	397, 542
NspV	TTCGAA	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	95, 136, 443, 880
PflFI	GACNNNGTC	1 cut(s)	850
PflMI	CCANNNNNTGG	3 cut(s)	123, 481, 667
PkrI	GCNGC	1 cut(s)	835
PleI	GAGTC	2 cut(s)	502, 589
PpsI	GAGTC	2 cut(s)	502, 589
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	172, 598, 679
PspGI	CCWGG	3 cut(s)	172, 598, 679
PspN4I	GGNNCC	3 cut(s)	298, 568, 810
PsyI	GACNNNGTC	1 cut(s)	850
RsaI	GTAC	3 cut(s)	314, 455, 869
RsaNI	GTAC	3 cut(s)	313, 454, 868
RseI	CAYNNNNRTG	1 cut(s)	803
SaqAI	TTAA	4 cut(s)	17, 45, 212, 699
SatI	GCNGC	1 cut(s)	834
Sau3AI	GATC	3 cut(s)	5, 202, 279
SchI	GAGTC	2 cut(s)	503, 589
ScrFI	CCNGG	3 cut(s)	174, 600, 681
Sfr274I	CTCGAG	1 cut(s)	590
SfuI	TTCGAA	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	520, 619
SspMI	CTAG	2 cut(s)	536, 849
StyD4I	CCNGG	3 cut(s)	172, 598, 679
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	439, 488
TaqI	TCGA	6 cut(s)	53, 86, 387, 516, 591, 883
TasI	AATT	1 cut(s)	431
TatI	WGTACW	2 cut(s)	312, 867
TfiI	GAWTC	4 cut(s)	95, 136, 443, 880
Tru1I	TTAA	4 cut(s)	17, 45, 212, 699
Tru9I	TTAA	4 cut(s)	17, 45, 212, 699
TseFI	GTSAC	2 cut(s)	397, 542
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	2 cut(s)	397, 542
TspDTI	ATGAA	5 cut(s)	16, 341, 435, 543, 698
TspGWI	ACGGA	1 cut(s)	628
Tth111I	GACNNNGTC	1 cut(s)	850
Van91I	CCANNNNNTGG	3 cut(s)	123, 481, 667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	2 cut(s)	192, 234
XspI	CTAG	2 cut(s)	536, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.