Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Reverse (-)

5888275 .. 5893751

Gene Structure 5477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G055300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATCACGCTCTTGCCATCATTTTCACCACTCTAAGCTTGCTCAAAATGGCAGTGGCTGAAGAGGAATTTTGCTCTGCTCCTTTAATCGTTGACTCGGGTTCGAACTCAAAGCATTTGTATTGGAAGGTCACCAATCCCACACTTTCTCCTTCTCATCTTCAAGACTTGCCAGGATTCACTCGTAGTGTTTACAAACAAGACCATGCTTTAATAACACCGGAAAGTCACGTCTTTAGTCCTTTACCTGAGTGGACCATGACATTGGGAGCCTATTTGATAACACCGGCTATGGGCTCACACTTTGTAATGTACCTTGCGAAGATGCAAGAAAACTCACTATCTGGACTCCCTCCATATGATGCTGAAAGGTTCATATTTGTGGTTCAGGGTGCTGTCACTCTCACTAATGTCTCTGGTATTAGCCACAAATTAACGGTGGATTCATATGCTTATCTGCCTCCTAATGTTGAACATTCCCTCAAGTGTGATGGATCTGCCACTCTTGTGGTATTTGAAAGAAGGCATGCTTCTCTGGAAAACCAACCTACTGAGCAGATTGTAGGTTCAACAGACCAGCAGCCACTCCTGGAAACTCCAGGGGAAGTCTTTCAATTAAGGAAGCTTATTCCAACATCTATACCCTATGACTTCAATATCCATATTATGGATTTCCAGCCTGGGGAATATCTTAATGTGAAGGAGGTCCATTACAATCAGCATGGTTTGCTGCTTCTGGAGGGACAGGGTATTTATCGATTAGGTGATAGCTGGTACCCTGTTCAAGCAGGTGATGCCATTTGGATGGCACCGTTTGTGCCTCAATGGTATGCTGCATTGGGTAAAAGCCGGTCACGATATTTGCTGTACAAAGATGTGAATAGAAATCCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

299

Amino Acids

33.49

Weight (kDa)

5.81

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	2 cut(s)	774, 808
AccB7I	CCANNNNNTGG	1 cut(s)	667
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	3 cut(s)	314, 776, 869
AfiI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
AgsI	TTSAA	7 cut(s)	164, 473, 518, 570, 614, 655, 785
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	4 cut(s)	172, 588, 598, 679
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	3 cut(s)	39, 625, 771
AluI	AGCT	3 cut(s)	39, 625, 771
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	580, 730, 833
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	609
Asp718I	GGTACC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	255, 706
AsuHPI	GGTGA	4 cut(s)	19, 124, 776, 803
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	255, 706
BanI	GGYRCC	2 cut(s)	774, 808
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	592, 717, 820
BccI	CCATC	3 cut(s)	26, 485, 799
BciT130I	CCWGG	4 cut(s)	174, 590, 600, 681
BcoDI	GTCTC	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	893
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	3 cut(s)	581, 731, 834
BlsI	GCNGC	3 cut(s)	582, 732, 835
Bme1390I	CCNGG	4 cut(s)	174, 590, 600, 681
Bme18I	GGWCC	2 cut(s)	255, 706
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	255, 706
BmiI	GGNNCC	3 cut(s)	271, 776, 810
BmrFI	CCNGG	4 cut(s)	174, 590, 600, 681
BmsI	GCATC	3 cut(s)	315, 352, 784
BpmI	CTGGAG	2 cut(s)	582, 758
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	599, 680
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 667, 682
Bse118I	RCCGGY	2 cut(s)	286, 849
BseBI	CCWGG	4 cut(s)	174, 590, 600, 681
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	599, 680
BseGI	GGATG	1 cut(s)	810
BseLI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
BseMII	CTCAG	2 cut(s)	240, 543
BseXI	GCAGC	3 cut(s)	592, 717, 820
BshNI	GGYRCC	2 cut(s)	774, 808
BshVI	ATCGAT	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	221, 287, 850
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	756
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	241, 544
BspDI	ATCGAT	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	271, 776, 810
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	774, 808
BsrFI	RCCGGY	2 cut(s)	286, 849
BsrGI	TGTACA	1 cut(s)	867
BssAI	RCCGGY	2 cut(s)	286, 849
BssECI	CCNNGG	2 cut(s)	599, 680
BssMI	GATC	1 cut(s)	494
Bst2UI	CCWGG	4 cut(s)	174, 590, 600, 681
Bst4CI	ACNGT	3 cut(s)	439, 813, 894
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	2 cut(s)	727, 794
BstAUI	TGTACA	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	41, 528
BstDEI	CTNAG	3 cut(s)	35, 249, 552
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	810
BstKTI	GATC	1 cut(s)	497
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	2 cut(s)	727, 794
BstNI	CCWGG	4 cut(s)	174, 590, 600, 681
BstNSI	RCATGY	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	172, 588, 598, 679
BstSFI	CTRYAG	1 cut(s)	893
BstV1I	GCAGC	3 cut(s)	592, 717, 820
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	3 cut(s)	265, 508, 805
BstYI	RGATCY	1 cut(s)	494
Bsu15I	ATCGAT	1 cut(s)	757
BsuTUI	ATCGAT	1 cut(s)	757
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	810
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 890
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	2 cut(s)	41, 528
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr10I	RCCGGY	2 cut(s)	286, 849
Cfr13I	GGNCC	2 cut(s)	255, 706
ClaI	ATCGAT	1 cut(s)	757
Csp6I	GTAC	3 cut(s)	313, 775, 868
CviAII	CATG	4 cut(s)	206, 259, 527, 722
CviQI	GTAC	3 cut(s)	313, 775, 868
DdeI	CTNAG	3 cut(s)	35, 249, 552
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	255, 706
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	4 cut(s)	172, 588, 598, 679
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	4 cut(s)	209, 262, 530, 725
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	4 cut(s)	205, 258, 526, 721
FauNDI	CATATG	2 cut(s)	358, 448
Fnu4HI	GCNGC	3 cut(s)	581, 731, 834
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	581, 731, 834
GluI	GCNGC	3 cut(s)	581, 731, 834
GsuI	CTGGAG	2 cut(s)	582, 758
HapII	CCGG	3 cut(s)	221, 287, 850
Hin1II	CATG	4 cut(s)	209, 262, 530, 725
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	37, 623
HinfI	GANTC	5 cut(s)	4, 95, 177, 348, 443
HpaII	CCGG	3 cut(s)	221, 287, 850
HphI	GGTGA	4 cut(s)	19, 124, 776, 803
Hpy166II	GTNNAC	3 cut(s)	94, 193, 255
Hpy188III	TCNNGA	5 cut(s)	164, 345, 536, 737, 855
Hpy8I	GTNNAC	3 cut(s)	94, 193, 255
HpyAV	CCTTC	4 cut(s)	121, 162, 516, 694
HpyCH4III	ACNGT	3 cut(s)	439, 813, 894
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	328, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	727, 794
HpyF3I	CTNAG	3 cut(s)	35, 249, 552
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	209, 262, 530, 725
KpnI	GGTACC	1 cut(s)	778
Kzo9I	GATC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	85, 269
Lsp1109I	GCAGC	3 cut(s)	592, 717, 820
LweI	GCATC	3 cut(s)	315, 352, 784
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	4 cut(s)	130, 227, 397, 852
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	3 cut(s)	74, 152, 334
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	68, 431, 614
MlyI	GAGTC	2 cut(s)	89, 342
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	7 cut(s)	58, 363, 471, 491, 697, 733, 831
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	5 cut(s)	86, 212, 434, 617, 693
MslI	CAYNNNNRTG	3 cut(s)	380, 506, 803
MspI	CCGG	3 cut(s)	221, 287, 850
MspR9I	CCNGG	4 cut(s)	174, 590, 600, 681
MvaI	CCWGG	4 cut(s)	174, 590, 600, 681
MwoI	GCNNNNNNNGC	2 cut(s)	727, 794
NdeI	CATATG	2 cut(s)	358, 448
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	4 cut(s)	209, 262, 530, 725
NlaIV	GGNNCC	3 cut(s)	271, 776, 810
NmuCI	GTSAC	4 cut(s)	130, 227, 397, 852
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	104
OliI	CACNNNNGTG	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	779
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	4, 177, 443
PflMI	CCANNNNNTGG	1 cut(s)	667
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	582, 732, 835
PleI	GAGTC	2 cut(s)	89, 342
PpsI	GAGTC	2 cut(s)	89, 342
Psp6I	CCWGG	4 cut(s)	172, 588, 598, 679
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	4 cut(s)	172, 588, 598, 679
PspN4I	GGNNCC	3 cut(s)	271, 776, 810
PspPI	GGNCC	2 cut(s)	255, 706
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	3 cut(s)	314, 776, 869
RsaNI	GTAC	3 cut(s)	313, 775, 868
RseI	CAYNNNNRTG	3 cut(s)	380, 506, 803
SaqAI	TTAA	5 cut(s)	86, 212, 434, 617, 693
SatI	GCNGC	3 cut(s)	581, 731, 834
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	2 cut(s)	255, 706
SchI	GAGTC	2 cut(s)	89, 342
ScrFI	CCNGG	4 cut(s)	174, 590, 600, 681
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	3 cut(s)	315, 352, 784
SfcI	CTRYAG	1 cut(s)	893
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	2 cut(s)	255, 706
SmiMI	CAYNNNNRTG	3 cut(s)	380, 506, 803
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	3 cut(s)	68, 431, 614
StyD4I	CCNGG	4 cut(s)	172, 588, 598, 679
TaaI	ACNGT	3 cut(s)	439, 813, 894
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	104, 757
TasI	AATT	3 cut(s)	68, 431, 614
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	3 cut(s)	4, 177, 443
Tru1I	TTAA	5 cut(s)	86, 212, 434, 617, 693
Tru9I	TTAA	5 cut(s)	86, 212, 434, 617, 693
TscAI	CASTG	2 cut(s)	60, 897
TseFI	GTSAC	4 cut(s)	130, 227, 397, 852
TseI	GCWGC	3 cut(s)	580, 730, 833
Tsp45I	GTSAC	4 cut(s)	130, 227, 397, 852
TspDTI	ATGAA	3 cut(s)	17, 364, 435
TspRI	CASTG	2 cut(s)	60, 897
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	2 cut(s)	255, 706
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.