Rorug07G0092400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001209
Physical Location & Seq
Reverse (-)
7231435 .. 7235360
3926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0092400.1

Sequence Viewer

Length: 1161 bp
ATGAACTGTGGAGGAAATGAGGACTTGGAATATCGAGCATCGGCTGTAGGTGACTTGAATGCAAATTATGTTACCCCTTTGCCCCCTGTGAGTCGTTGGTATGGTCAGATTTCTGCTCCTGCCGATATCATAAGTAGAGATGGCACAAAGGAACAAATGGTGTGCAACTACCAGATGAATTCGGAGGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTTATTCAGAAGATTAAGCCAGGGATGAAGCTATTTCTATTTGACTATGATGTGAAGTATCTTTATGGGGTATACGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTCAAACATGCTATTCGAGATAACTACCAGACAGGCTCCAAAAAATTTAATCCAATTCTCAGTAGCCAACAAGTAAGTCATCTATTATCAATGTTCAATCCTCTTACAAAGCTGTCATCTGCTAAATATGACCATTACCCTGTAAAGAATCAATTTCAATCCCATTCAAGGCTTCCTCCTCCAAGTTATCCATCCTTTAACTTGATAAACACCAGTCATGCTCCACAAGCGTCACTGCCTCCAAGCTATTCTTCCATGTATGGCAGACTTACTTCACCAGCCTTGGAGCCTCAGTATACTCAAACGAGTGTCCTGCAGCCAGAACATGTTGGTTATGGATATGCACCACAGATGGGCTACATAAATCCTGCAGTGCAACTGCAAGCCAATTCAGCTCCATATCAGACATCTTATACTGTAGAAGCTGGGCAGCCGTACTTGCATGAAGTACCCAAATCATATGAAAGGTATGAGGCTGCTGCACAGGCTATGGTTCCTACTCATCAATACACTGACTGGAGATATGAGTACAATCAGTTACCGTCACAGACCCATATGCAGATGCAGGAGAATGCTGCTCAACACCAGAGTCTCTATCAAGTGCCTGCAGCCCATCATGTTACACAGCCTATACAACAACACGCATCGAGATTCAAAGAGCCTGGGCCTGCTGTGAGGACTCTTCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

386

Amino Acids

43.75

Weight (kDa)

8.08

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 66 - 188 4.7e-48 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 351, 764
AcsI RAATTY 2 cut(s) 178, 512
AfaI GTAC 4 cut(s) 245, 905, 918, 998
AfiI CCNNNNNNNGG 3 cut(s) 418, 636, 821
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 7 cut(s) 58, 379, 472, 565, 626, 636, 1123
AjnI CCWGG 2 cut(s) 298, 1129
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
AluBI AGCT 6 cut(s) 310, 392, 580, 714, 863, 893
AluI AGCT 6 cut(s) 310, 392, 580, 714, 863, 893
Alw26I GTCTC 2 cut(s) 452, 1064
AoxI GGCC 1 cut(s) 1133
ApeKI GCWGC 7 cut(s) 392, 784, 898, 944, 947, 1043, 1076
ApoI RAATTY 2 cut(s) 178, 512
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 1133
AsuHPI GGTGA 3 cut(s) 62, 433, 735
BbvI GCAGC 7 cut(s) 379, 796, 910, 931, 934, 1030, 1088
BccI CCATC 4 cut(s) 134, 667, 814, 1089
BceAI ACGGC 1 cut(s) 886
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BciT130I CCWGG 2 cut(s) 300, 1131
BcoDI GTCTC 2 cut(s) 452, 1064
BfmI CTRYAG 5 cut(s) 45, 782, 837, 885, 1074
BisI GCNGC 7 cut(s) 393, 785, 899, 945, 948, 1044, 1077
BlsI GCNGC 7 cut(s) 394, 786, 900, 946, 949, 1045, 1078
Bme1390I CCNGG 2 cut(s) 300, 1131
BmgT120I GGNCC 1 cut(s) 1133
BmiI GGNNCC 3 cut(s) 505, 756, 963
BmrFI CCNGG 2 cut(s) 300, 1131
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 47, 1020, 1121
BmuI ACTGGG 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 1006
BsaJI CCNNGG 3 cut(s) 299, 750, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 636, 821
Bse1I ACTGG 3 cut(s) 386, 681, 989
BseBI CCWGG 2 cut(s) 300, 1131
BseDI CCNNGG 3 cut(s) 299, 750, 1130
BseGI GGATG 2 cut(s) 309, 659
BseLI CCNNNNNNNGG 3 cut(s) 418, 636, 821
BseMII CTCAG 2 cut(s) 541, 773
BseNI ACTGG 3 cut(s) 386, 681, 989
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 7 cut(s) 379, 796, 910, 931, 934, 1030, 1088
BseYI CCCAGC 1 cut(s) 893
BsgI GTGCAG 2 cut(s) 399, 933
BshFI GGCC 1 cut(s) 1135
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 418, 636, 821
BsmAI GTCTC 2 cut(s) 452, 1064
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 3 cut(s) 64, 239, 1045
BsnI GGCC 1 cut(s) 1135
BspANI GGCC 1 cut(s) 1135
BspCNI CTCAG 2 cut(s) 540, 772
BspLI GGNNCC 3 cut(s) 505, 756, 963
BspMAI CTGCAG 3 cut(s) 786, 841, 1078
BsrI ACTGG 3 cut(s) 386, 681, 989
BssECI CCNNGG 3 cut(s) 299, 750, 1130
BssNAI GTATAC 2 cut(s) 352, 765
BssT1I CCWWGG 1 cut(s) 750
Bst1107I GTATAC 2 cut(s) 352, 765
Bst2UI CCWGG 2 cut(s) 300, 1131
Bst4CI ACNGT 3 cut(s) 8, 886, 1011
Bst6I CTCTTC 1 cut(s) 1155
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 852, 1074, 1137
BstDEI CTNAG 2 cut(s) 527, 759
BstF5I GGATG 2 cut(s) 309, 659
BstMAI GTCTC 2 cut(s) 452, 1064
BstMWI GCNNNNNNNGC 5 cut(s) 365, 695, 860, 907, 953
BstNI CCWGG 2 cut(s) 300, 1131
BstNSI RCATGY 2 cut(s) 479, 797
BstSCI CCNGG 2 cut(s) 298, 1129
BstSFI CTRYAG 5 cut(s) 45, 782, 837, 885, 1074
BstV1I GCAGC 7 cut(s) 379, 796, 910, 931, 934, 1030, 1088
BstZ17I GTATAC 2 cut(s) 352, 765
BsuRI GGCC 1 cut(s) 1135
BtsCI GGATG 2 cut(s) 309, 659
BtsI GCAGTG 3 cut(s) 363, 701, 846
BtsIMutI CAGTG 4 cut(s) 363, 701, 846, 978
Cac8I GCNNGC 3 cut(s) 852, 1074, 1137
Cfr13I GGNCC 1 cut(s) 1133
CseI GACGC 1 cut(s) 687
Csp6I GTAC 4 cut(s) 244, 904, 917, 997
CviAII CATG 6 cut(s) 476, 686, 724, 794, 911, 1085
CviQI GTAC 4 cut(s) 244, 904, 917, 997
DdeI CTNAG 2 cut(s) 527, 759
Eam1104I CTCTTC 1 cut(s) 1155
EarI CTCTTC 1 cut(s) 1155
Eco130I CCWWGG 1 cut(s) 750
Eco32I GATATC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 298, 1129
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 6 cut(s) 479, 689, 727, 797, 914, 1088
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FaqI GGGAC 1 cut(s) 398
FatI CATG 6 cut(s) 475, 685, 723, 793, 910, 1084
FauNDI CATATG 2 cut(s) 928, 1023
FblI GTMKAC 2 cut(s) 351, 764
Fnu4HI GCNGC 7 cut(s) 393, 785, 899, 945, 948, 1044, 1077
FokI GGATG 2 cut(s) 316, 646
Fsp4HI GCNGC 7 cut(s) 393, 785, 899, 945, 948, 1044, 1077
GluI GCNGC 7 cut(s) 393, 785, 899, 945, 948, 1044, 1077
GsaI CCCAGC 1 cut(s) 897
GsuI CTGGAG 1 cut(s) 1006
HaeIII GGCC 1 cut(s) 1135
HgaI GACGC 1 cut(s) 687
Hin1II CATG 6 cut(s) 479, 689, 727, 797, 914, 1088
HinfI GANTC 6 cut(s) 91, 426, 616, 1057, 1119, 1147
HphI GGTGA 3 cut(s) 62, 433, 735
Hpy166II GTNNAC 2 cut(s) 352, 765
Hpy188I TCNGA 5 cut(s) 108, 184, 257, 288, 873
Hpy188III TCNNGA 2 cut(s) 485, 1116
Hpy8I GTNNAC 2 cut(s) 352, 765
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 3 cut(s) 8, 886, 1011
HpyF10VI GCNNNNNNNGC 5 cut(s) 365, 695, 860, 907, 953
HpyF3I CTNAG 2 cut(s) 527, 759
Hsp92II CATG 6 cut(s) 479, 689, 727, 797, 914, 1088
LmnI GCTCC 5 cut(s) 121, 509, 694, 754, 868
Lsp1109I GCAGC 7 cut(s) 379, 796, 910, 931, 934, 1030, 1088
LweI GCATC 3 cut(s) 47, 1020, 1121
MaeIII GTNAC 6 cut(s) 50, 70, 699, 1005, 1011, 1087
MboII GAAGA 4 cut(s) 282, 301, 711, 1142
MluCI AATT 7 cut(s) 64, 178, 374, 512, 522, 620, 856
MlyI GAGTC 3 cut(s) 100, 1066, 1141
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 3 cut(s) 294, 516, 666
MspA1I CMGCKG 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 300, 1131
Mva1269I GAATGC 3 cut(s) 64, 239, 1045
MvaI CCWGG 2 cut(s) 300, 1131
MwoI GCNNNNNNNGC 5 cut(s) 365, 695, 860, 907, 953
NdeI CATATG 2 cut(s) 928, 1023
NlaIII CATG 6 cut(s) 479, 689, 727, 797, 914, 1088
NlaIV GGNNCC 3 cut(s) 505, 756, 963
NmuCI GTSAC 3 cut(s) 50, 699, 1011
NspI RCATGY 2 cut(s) 479, 797
PciI ACATGT 1 cut(s) 793
PctI GAATGC 3 cut(s) 64, 239, 1045
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 426, 616, 1119
PkrI GCNGC 7 cut(s) 394, 786, 900, 946, 949, 1045, 1078
PleI GAGTC 3 cut(s) 99, 1065, 1141
PpsI GAGTC 3 cut(s) 99, 1065, 1141
PscI ACATGT 1 cut(s) 793
Psp6I CCWGG 2 cut(s) 298, 1129
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 2 cut(s) 298, 1129
PspN4I GGNNCC 3 cut(s) 505, 756, 963
PspPI GGNCC 1 cut(s) 1133
PstI CTGCAG 3 cut(s) 786, 841, 1078
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 4 cut(s) 245, 905, 918, 998
RsaNI GTAC 4 cut(s) 244, 904, 917, 997
SaqAI TTAA 3 cut(s) 294, 516, 666
SatI GCNGC 7 cut(s) 393, 785, 899, 945, 948, 1044, 1077
Sau96I GGNCC 1 cut(s) 1133
SchI GAGTC 3 cut(s) 100, 1066, 1141
ScrFI CCNGG 2 cut(s) 300, 1131
SetI ASST 9 cut(s) 52, 312, 394, 423, 582, 716, 865, 895, 938
SfaNI GCATC 3 cut(s) 47, 1020, 1121
SfcI CTRYAG 5 cut(s) 45, 782, 837, 885, 1074
Sse9I AATT 7 cut(s) 64, 178, 374, 512, 522, 620, 856
StyD4I CCNGG 2 cut(s) 298, 1129
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 3 cut(s) 8, 886, 1011
TaqI TCGA 3 cut(s) 34, 484, 1115
TasI AATT 7 cut(s) 64, 178, 374, 512, 522, 620, 856
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 3 cut(s) 426, 616, 1119
Tru1I TTAA 3 cut(s) 294, 516, 666
Tru9I TTAA 3 cut(s) 294, 516, 666
TscAI CASTG 4 cut(s) 370, 708, 846, 985
TseFI GTSAC 3 cut(s) 50, 699, 1011
TseI GCWGC 7 cut(s) 392, 784, 898, 944, 947, 1043, 1076
Tsp45I GTSAC 3 cut(s) 50, 699, 1011
TspDTI ATGAA 5 cut(s) 17, 191, 320, 927, 945
TspRI CASTG 4 cut(s) 370, 708, 846, 985
XapI RAATTY 2 cut(s) 178, 512
XceI RCATGY 2 cut(s) 479, 797
XmiI GTMKAC 2 cut(s) 351, 764
XmnI GAANNNNTTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.