pycom06g03940
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001209
Physical Location & Seq
Forward (+)
4918403 .. 4919464
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03940.1

Sequence Viewer

Length: 1062 bp
ATGGCCTCACCCACCGAACCCAAACCCCGCAAGTTCCCACCACCCTGTTGGACCCGCGACGAGTCCCACGCCCTCATCTCCCTCTACAAGGACCGATGGTTAGCTCTCGGCCGATCCAACCTTAAATCTGCCGACTGGGACTCCGTTGCGTCCTCCGTCAACGACCGATGCCCCCTCGTCTCTCCCCCCAAGACCGCCATACAGTGCCGTCACAAGATGGAGAAGCTCCGGAGGCGCTTTCGGACTGAGAAAGAGCGCGCTTCCACTCACATAGGTCCGGCAGCCTTTTTTTCCTCCTTTGATCTGTTTCAGCCTATGATCGACTTGGAATGCAACTCTCCTTTGGTTTTCGGGTCCAACCCAGATCCGGAAAACCGCATCACTGTTGAATATGGAGGTGGGTTTCGGGTCAGAAATGATGAAAGTTTCAGGTATTTAGCTGATTCTGATCCAAATTTGAGTGACCCAGATGAGACAACCTCAAAAGGTTCCGGATTCGGAGGTGGGTTTCGGGTCAAAAATCCTGTTCGAGGTCCGAATTCAGGAGTTTCAGCTGGTTTTGATCGATATGGTAGTCGAGGAAGTGATGGTGGTAGTGGTTTTCCTGTAAAATCATTGGGGGATAGGAATTTCTGGCCTTCAGATTTTAGGAGCAAGAGTTACGGTAAAAGTAACGACAAGTTTAATCCCAAGCTTATCTCGAAGCGTAGTGGCAGCAATGGAGTTGGTTCAGGGAGCAGATTTAATCAGAAATTCAAAGGGAGTTTGCATTCTAATGGCGTTGGCATTGAAGATTTAGGTGGGAGTTCATCTGGGAAAGGGATGGATGATCCGATTGAAGCGATGGCGTCTTCGATAGAGTTTTTGGGAGAAGTGTTTGTGAAGATGGAGAAGAGGAAGATGGAGATGGCCGGGGAGATGGCGAAGATGAGAATGAAGATGGAGATGAAGCAAAATCAGCTGATAATGGAATCGCAGAAGCAGATGGTGGATGCTTGTGTGAATGCATTGTGGGAAACCAAGAAGAAGAAGATGAAAGTCGTCTCGCTTGACGATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

354

Amino Acids

39.14

Weight (kDa)

9.41

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 100 1.4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 57, 258
AccIII TCCGGA 3 cut(s) 228, 367, 491
AciI CCGC 4 cut(s) 28, 55, 195, 376
AclWI GGATC 4 cut(s) 108, 359, 443, 824
AcoI YGGCCR 2 cut(s) 109, 909
AcsI RAATTY 4 cut(s) 454, 538, 628, 752
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 848
AfiI CCNNNNNNNGG 4 cut(s) 88, 367, 530, 542
AgsI TTSAA 4 cut(s) 389, 757, 791, 839
AluBI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
AluI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
Alw26I GTCTC 3 cut(s) 184, 467, 1048
AlwI GGATC 4 cut(s) 108, 359, 443, 824
Aor13HI TCCGGA 3 cut(s) 228, 367, 491
AoxI GGCC 4 cut(s) 3, 109, 635, 909
ApeKI GCWGC 2 cut(s) 281, 714
ApoI RAATTY 4 cut(s) 454, 538, 628, 752
AspLEI GCGC 3 cut(s) 237, 258, 260
AspS9I GGNCC 5 cut(s) 51, 91, 275, 354, 533
AsuC2I CCSGG 1 cut(s) 913
AvaII GGWCC 5 cut(s) 51, 91, 275, 354, 533
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 2 cut(s) 293, 726
BceAI ACGGC 1 cut(s) 192
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 3 cut(s) 184, 467, 1048
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 2 cut(s) 282, 715
BlsI GCNGC 2 cut(s) 283, 716
Bme1390I CCNGG 1 cut(s) 913
Bme18I GGWCC 5 cut(s) 51, 91, 275, 354, 533
BmgT120I GGNCC 5 cut(s) 51, 91, 275, 354, 533
BmiI GGNNCC 3 cut(s) 53, 355, 490
BmrFI CCNGG 1 cut(s) 913
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 158, 387, 982
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuMI CCSGG 1 cut(s) 913
Bsa29I ATCGAT 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 912
BsaWI WCCGGW 3 cut(s) 228, 367, 491
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 643, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 367, 530, 542
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 3 cut(s) 228, 367, 491
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 912
BseGI GGATG 3 cut(s) 828, 832, 997
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 4 cut(s) 88, 367, 530, 542
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 140
BsePI GCGCGC 1 cut(s) 256
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 293, 726
Bsh1236I CGCG 2 cut(s) 57, 258
Bsh1285I CGRYCG 2 cut(s) 112, 166
BshFI GGCC 4 cut(s) 5, 111, 637, 911
BshVI ATCGAT 1 cut(s) 565
BsiEI CGRYCG 2 cut(s) 112, 166
BsiSI CCGG 5 cut(s) 229, 278, 368, 492, 912
BslFI GGGAC 2 cut(s) 49, 152
BslI CCNNNNNNNGG 4 cut(s) 88, 367, 530, 542
BsmAI GTCTC 3 cut(s) 184, 467, 1048
BsmBI CGTCTC 2 cut(s) 184, 1048
BsmFI GGGAC 2 cut(s) 49, 152
BsmI GAATGC 3 cut(s) 335, 769, 1009
BsnI GGCC 4 cut(s) 5, 111, 637, 911
Bsp13I TCCGGA 3 cut(s) 228, 367, 491
Bsp143I GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BspACI CCGC 4 cut(s) 28, 55, 195, 376
BspANI GGCC 4 cut(s) 5, 111, 637, 911
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 565
BspEI TCCGGA 3 cut(s) 228, 367, 491
BspFNI CGCG 2 cut(s) 57, 258
BspLI GGNNCC 3 cut(s) 53, 355, 490
BspPI GGATC 4 cut(s) 108, 359, 443, 824
BsrDI GCAATG 1 cut(s) 724
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 912
BssHII GCGCGC 1 cut(s) 256
BssMI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BssNI GRCGYC 1 cut(s) 848
Bst4CI ACNGT 3 cut(s) 204, 385, 665
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 2 cut(s) 86, 528
BstF5I GGATG 3 cut(s) 828, 832, 997
BstFNI CGCG 2 cut(s) 57, 258
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 237, 258, 260
BstKTI GATC 7 cut(s) 116, 304, 321, 367, 451, 565, 832
BstMAI GTCTC 3 cut(s) 184, 467, 1048
BstMBI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BstMCI CGRYCG 2 cut(s) 112, 166
BstMWI GCNNNNNNNGC 2 cut(s) 232, 958
BstSCI CCNGG 1 cut(s) 911
BstUI CGCG 2 cut(s) 57, 258
BstV1I GCAGC 2 cut(s) 293, 726
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 4 cut(s) 5, 111, 637, 911
BsuTUI ATCGAT 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 3 cut(s) 828, 832, 997
BtsIMutI CAGTG 2 cut(s) 209, 381
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 3 cut(s) 237, 258, 260
Cfr13I GGNCC 5 cut(s) 51, 91, 275, 354, 533
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 2 cut(s) 138, 837
DdeI CTNAG 1 cut(s) 246
DpnI GATC 7 cut(s) 115, 303, 320, 366, 450, 564, 831
DpnII GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
EaeI YGGCCR 2 cut(s) 109, 909
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EclXI CGGCCG 1 cut(s) 109
Eco47I GGWCC 5 cut(s) 51, 91, 275, 354, 533
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 624
EcoNI CCTNNNNNAGG 2 cut(s) 86, 528
EcoRI GAATTC 1 cut(s) 538
EcoT22I ATGCAT 1 cut(s) 1009
Esp3I CGTCTC 2 cut(s) 184, 1048
FaiI YATR 5 cut(s) 200, 272, 317, 393, 570
FaqI GGGAC 2 cut(s) 49, 152
FauI CCCGC 2 cut(s) 35, 62
Fnu4HI GCNGC 2 cut(s) 282, 715
FokI GGATG 3 cut(s) 835, 839, 1004
Fsp4HI GCNGC 2 cut(s) 282, 715
GlaI GCGC 3 cut(s) 236, 257, 259
GluI GCNGC 2 cut(s) 282, 715
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 4 cut(s) 5, 111, 637, 911
HapII CCGG 5 cut(s) 229, 278, 368, 492, 912
HgaI GACGC 2 cut(s) 138, 837
HhaI GCGC 3 cut(s) 237, 258, 260
Hin1I GRCGYC 1 cut(s) 848
Hin6I GCGC 3 cut(s) 235, 256, 258
HinP1I GCGC 3 cut(s) 235, 256, 258
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 6 cut(s) 62, 140, 443, 495, 971, 1055
HpaII CCGG 5 cut(s) 229, 278, 368, 492, 912
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 8 cut(s) 243, 413, 448, 500, 537, 643, 750, 834
Hpy188III TCNNGA 5 cut(s) 229, 368, 492, 543, 700
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 3 cut(s) 204, 385, 665
HpyCH4V TGCA 3 cut(s) 333, 769, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 958
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 848
HspAI GCGC 3 cut(s) 235, 256, 258
Kpn2I TCCGGA 3 cut(s) 228, 367, 491
Kzo9I GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
LmnI GCTCC 3 cut(s) 231, 651, 735
Lsp1109I GCAGC 2 cut(s) 293, 726
LweI GCATC 3 cut(s) 158, 387, 982
MaeIII GTNAC 4 cut(s) 209, 461, 659, 671
MalI GATC 7 cut(s) 115, 303, 320, 366, 450, 564, 831
MboI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
MflI RGATCY 1 cut(s) 364
MluCI AATT 4 cut(s) 454, 538, 628, 752
MlyI GAGTC 2 cut(s) 71, 134
MmeI TCCRAC 3 cut(s) 29, 141, 381
Mph1103I ATGCAT 1 cut(s) 1009
MroI TCCGGA 3 cut(s) 228, 367, 491
MseI TTAA 3 cut(s) 123, 684, 744
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 554, 961
MspI CCGG 5 cut(s) 229, 278, 368, 492, 912
MspR9I CCNGG 1 cut(s) 913
Mva1269I GAATGC 3 cut(s) 335, 769, 1009
MvnI CGCG 2 cut(s) 57, 258
MwoI GCNNNNNNNGC 2 cut(s) 232, 958
NciI CCSGG 1 cut(s) 913
NdeII GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
NlaIV GGNNCC 3 cut(s) 53, 355, 490
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 209, 461
NsiI ATGCAT 1 cut(s) 1009
PauI GCGCGC 1 cut(s) 256
PctI GAATGC 3 cut(s) 335, 769, 1009
PfeI GAWTC 4 cut(s) 443, 495, 971, 1055
PkrI GCNGC 2 cut(s) 283, 716
PleI GAGTC 2 cut(s) 70, 134
PpsI GAGTC 2 cut(s) 70, 134
PspN4I GGNNCC 3 cut(s) 53, 355, 490
PspPI GGNCC 5 cut(s) 51, 91, 275, 354, 533
PsuI RGATCY 1 cut(s) 364
PteI GCGCGC 1 cut(s) 256
PvuII CAGCTG 2 cut(s) 554, 961
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 3 cut(s) 123, 684, 744
SatI GCNGC 2 cut(s) 282, 715
Sau3AI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
Sau96I GGNCC 5 cut(s) 51, 91, 275, 354, 533
SchI GAGTC 2 cut(s) 71, 134
ScrFI CCNGG 1 cut(s) 913
SfaNI GCATC 3 cut(s) 158, 387, 982
SinI GGWCC 5 cut(s) 51, 91, 275, 354, 533
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 4 cut(s) 454, 538, 628, 752
SsiI CCGC 4 cut(s) 28, 55, 195, 376
StyD4I CCNGG 1 cut(s) 911
TaaI ACNGT 3 cut(s) 204, 385, 665
TaqI TCGA 6 cut(s) 321, 529, 565, 577, 701, 854
TaqII GACCGA 2 cut(s) 108, 180
TasI AATT 4 cut(s) 454, 538, 628, 752
TfiI GAWTC 4 cut(s) 443, 495, 971, 1055
Tru1I TTAA 3 cut(s) 123, 684, 744
Tru9I TTAA 3 cut(s) 123, 684, 744
TscAI CASTG 2 cut(s) 209, 388
TseFI GTSAC 2 cut(s) 209, 461
TseI GCWGC 2 cut(s) 281, 714
Tsp45I GTSAC 2 cut(s) 209, 461
TspDTI ATGAA 5 cut(s) 435, 798, 950, 962, 1049
TspGWI ACGGA 2 cut(s) 133, 145
TspRI CASTG 2 cut(s) 209, 388
VpaK11BI GGWCC 5 cut(s) 51, 91, 275, 354, 533
XagI CCTNNNNNAGG 2 cut(s) 86, 528
XapI RAATTY 4 cut(s) 454, 538, 628, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.