Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

62485139 .. 62485396

Gene Structure 258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTCCTCCCCAAGCCCCTCACTGTGGTGTTGGTCTGACAACGAGGCCGAAGCCCTTATCTCCATCTTCAAGGACAAGTGGTCCTCTCTCGGCCGCACCAATCTCAAAGCCACCAACTGGGATGATGTAGCCACCACCCTCGCCGCCCAATTCCCACTAGTCTTGTTGTTGAAGACCACCGCGCAGTGCCACAACAAGATCGATAAGGTCCGGAGAGAAGTGGAGGTGGGTTCGAAAGTCAAACAAGAACATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

7.8

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	9 - 73	1.7e-07	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	3 cut(s)	94, 144, 180
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	24, 117
AgsI	TTSAA	2 cut(s)	70, 172
AhdI	GACNNNNNGTC	1 cut(s)	79
AhlI	ACTAGT	1 cut(s)	157
AleI	CACNNNNGTG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	2 cut(s)	45, 91
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	81, 208
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	81, 208
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	1 cut(s)	71
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	94, 144
BlsI	GCNGC	2 cut(s)	95, 145
Bme18I	GGWCC	2 cut(s)	81, 208
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	81, 208
BmrI	ACTGGG	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 117
Bse1I	ACTGG	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	201
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	24, 117
BseNI	ACTGG	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	47, 93
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	24, 117
BsnI	GGCC	2 cut(s)	47, 93
Bsp119I	TTCGAA	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	94, 144, 180
BspANI	GGCC	2 cut(s)	47, 93
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	179
BstZI	CGGCCG	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	47, 93
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	20, 191
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	81, 208
ClaI	ATCGAT	1 cut(s)	201
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviJI	RGCY	6 cut(s)	15, 47, 53, 93, 110, 131
CviKI_1	RGCY	6 cut(s)	15, 47, 53, 93, 110, 131
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DriI	GACNNNNNGTC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	91
EagI	CGGCCG	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	81, 208
Eco52I	CGGCCG	1 cut(s)	91
FalI	AAGNNNNNCTT	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	94, 144
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	94, 144
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	94, 144
HaeIII	GGCC	2 cut(s)	47, 93
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	24
HspAI	GCGC	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	2 cut(s)	103, 224
MaeI	CTAG	1 cut(s)	158
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	58, 184
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	6 cut(s)	16, 28, 37, 94, 149, 217
MroI	TCCGGA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	182
NdeII	GATC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	95, 145
PspPI	GGNCC	2 cut(s)	81, 208
RseI	CAYNNNNRTG	1 cut(s)	25
SatI	GCNGC	2 cut(s)	94, 144
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	2 cut(s)	81, 208
SetI	ASST	2 cut(s)	210, 228
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	2 cut(s)	81, 208
SmiMI	CAYNNNNRTG	1 cut(s)	25
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	3 cut(s)	94, 144, 180
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	201, 233
TasI	AATT	1 cut(s)	149
TauI	GCSGC	2 cut(s)	96, 146
TscAI	CASTG	2 cut(s)	27, 191
TspRI	CASTG	2 cut(s)	27, 191
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	81, 208
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.