Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

12114937 .. 12116236

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCCTCCCCCACCGCCGCCCCACCCCGCAAGTTCCCCCCGCCGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAACAGAAATGGACCTCCCTGAACCGCACCAACCTCAAATCCCACGACTGGGATGACGTCGCCGCCTCCCTCGCCGCCCAGTTCCCCCTCGTCTCCCCCTCCAAGACCGCCGTCCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGCTTCCGCTCCGAGAAGCTCCGCGCCTCCACCCGACCCGGCCGCTTCTCCCCTTGGGCCCTCTACCCCTTCATGGAGGACCTCGAGTCCCACAACCACCCCTCCGCTAAACCTGACGCCGGCTCCGGCTTCTTAGCTGCTCTCGATGAGTTTGTTGGTCTAGGTGATGATGCGCATTTCCCGGTGAAGTCGTTAGGCAATAGGAACTTGGGCACTTACGTCACACCGAAGAGTCATGAGGAGGAGGAGTTTAATCCTAAGAGGAAGGTGAAATTGGCGAGTGGTTCTGGTGTGTTGAGGAGTAGTAATGTTAAGGAGGTTGATCCGGTTGGGGCGATTGTTTCGTCGATTCGGTTGCTGGGGGAGAAGTATATGGAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAGATGGACATGGAAATGAAGCAGACTCAGGCGGTTATGGAGTCGCAGCAACAGATGGTCAATGTTTGTGTGAGTGCATTGTTGGACAGCAAGAAGAAGAAGAGGAAGATCAAGGCTGTGCCAACTGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

9.4

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	15 - 106	3.4e-14	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
Acc16I	TGCGCA	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	258
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	144, 351
AfiI	CCNNNNNNNGG	4 cut(s)	135, 136, 307, 353
AgsI	TTSAA	1 cut(s)	88
AhdI	GACNNNNNGTC	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	226, 253, 371
AluI	AGCT	3 cut(s)	226, 253, 371
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	63, 274, 291
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	371, 703
AspLEI	GCGC	2 cut(s)	260, 409
AspS9I	GGNCC	6 cut(s)	51, 64, 99, 291, 292, 313
AsuC2I	CCSGG	2 cut(s)	273, 416
AsuHPI	GGTGA	3 cut(s)	410, 430, 514
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	3 cut(s)	51, 99, 313
BaeGI	GKGCMC	2 cut(s)	295, 449
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	358, 715
BccI	CCATC	4 cut(s)	622, 628, 655, 706
BceAI	ACGGC	2 cut(s)	28, 182
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcnI	CCSGG	2 cut(s)	273, 416
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	3 cut(s)	395, 639, 790
BisI	GCNGC	6 cut(s)	18, 150, 162, 277, 372, 704
BlsI	GCNGC	6 cut(s)	19, 151, 163, 278, 373, 705
Bme1390I	CCNGG	2 cut(s)	273, 416
Bme18I	GGWCC	3 cut(s)	51, 99, 313
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	6 cut(s)	51, 64, 99, 291, 292, 313
BmiI	GGNNCC	2 cut(s)	293, 358
BmrFI	CCNGG	2 cut(s)	273, 416
BmrI	ACTGGG	2 cut(s)	145, 160
BmsI	GCATC	2 cut(s)	394, 645
BmuI	ACTGGG	2 cut(s)	145, 160
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	273, 416
BsaHI	GRCGYC	2 cut(s)	144, 351
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	6 cut(s)	320, 341, 350, 371, 467, 497
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 136, 307, 353
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	140, 166, 202
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	4 cut(s)	135, 136, 307, 353
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	3 cut(s)	140, 166, 202
BseRI	GAGGAG	4 cut(s)	488, 491, 494, 547
BseSI	GKGCMC	2 cut(s)	295, 449
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	358, 715
BseYI	CCCAGC	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	65, 276, 293
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	273, 354, 360, 416, 560
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	4 cut(s)	135, 136, 307, 353
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	65, 276, 293
BsoBI	CYCGRG	1 cut(s)	317
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	295, 449
Bsp143I	GATC	3 cut(s)	216, 556, 765
BspANI	GGCC	3 cut(s)	65, 276, 293
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	293, 358
BspPI	GGATC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	140, 166, 202
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	216, 556, 765
BssNI	GRCGYC	2 cut(s)	144, 351
BssT1I	CCWWGG	1 cut(s)	287
Bst6I	CTCTTC	3 cut(s)	458, 614, 752
BstACI	GRCGYC	2 cut(s)	144, 351
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	367, 492, 684
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	260, 409
BstKTI	GATC	3 cut(s)	219, 559, 768
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	216, 556, 765
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	271, 414
BstSLI	GKGCMC	2 cut(s)	295, 449
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	358, 715
BstV2I	GAAGAC	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	65, 276, 293
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	260, 409
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	6 cut(s)	51, 64, 99, 291, 292, 313
CseI	GACGC	1 cut(s)	359
CviAII	CATG	3 cut(s)	307, 470, 667
DdeI	CTNAG	3 cut(s)	367, 492, 684
DpnI	GATC	3 cut(s)	218, 558, 767
DpnII	GATC	3 cut(s)	216, 556, 765
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	274
EagI	CGGCCG	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	458, 614, 752
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	3 cut(s)	458, 614, 752
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	3 cut(s)	51, 99, 313
Eco52I	CGGCCG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	292, 313
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	3 cut(s)	310, 473, 670
FaiI	YATR	6 cut(s)	308, 471, 606, 608, 668, 695
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	306, 469, 666
FauI	CCCGC	2 cut(s)	35, 48
Fnu4HI	GCNGC	6 cut(s)	18, 150, 162, 277, 372, 704
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	6 cut(s)	18, 150, 162, 277, 372, 704
FspAI	RTGCGCAY	1 cut(s)	408
FspBI	CTAG	3 cut(s)	395, 639, 790
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	259, 408
GluI	GCNGC	6 cut(s)	18, 150, 162, 277, 372, 704
GsaI	CCCAGC	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	65, 276, 293
HapII	CCGG	5 cut(s)	273, 354, 360, 416, 560
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	260, 409
Hin1I	GRCGYC	2 cut(s)	144, 351
Hin1II	CATG	3 cut(s)	310, 473, 670
Hin6I	GCGC	2 cut(s)	258, 407
HinP1I	GCGC	2 cut(s)	258, 407
HinfI	GANTC	6 cut(s)	320, 466, 583, 682, 698, 785
HpaII	CCGG	5 cut(s)	273, 354, 360, 416, 560
HphI	GGTGA	3 cut(s)	410, 430, 514
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	220, 377, 470
Hpy99I	CGWCG	4 cut(s)	59, 62, 149, 583
HpyAV	CCTTC	2 cut(s)	313, 493
HpyCH4IV	ACGT	2 cut(s)	144, 453
HpyCH4V	TGCA	2 cut(s)	658, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	367, 492, 684
HpySE526I	ACGT	2 cut(s)	144, 453
Hsp92I	GRCGYC	2 cut(s)	144, 351
Hsp92II	CATG	3 cut(s)	310, 473, 670
HspAI	GCGC	2 cut(s)	258, 407
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	216, 556, 765
LmnI	GCTCC	4 cut(s)	231, 248, 258, 362
Lsp1109I	GCAGC	2 cut(s)	358, 715
LweI	GCATC	2 cut(s)	394, 645
MaeI	CTAG	3 cut(s)	395, 639, 790
MaeII	ACGT	2 cut(s)	144, 453
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	218, 558, 767
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	3 cut(s)	216, 556, 765
MboII	GAAGA	8 cut(s)	76, 475, 631, 637, 763, 766, 769, 775
MhlI	GDGCHC	2 cut(s)	295, 449
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	4 cut(s)	329, 475, 676, 707
MmeI	TCCRAC	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	2 cut(s)	486, 546
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	5 cut(s)	273, 354, 360, 416, 560
MspR9I	CCNGG	2 cut(s)	273, 416
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	158
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	2 cut(s)	273, 416
NdeII	GATC	3 cut(s)	216, 556, 765
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	310, 473, 670
NlaIV	GGNNCC	2 cut(s)	293, 358
NmuCI	GTSAC	1 cut(s)	454
NsbI	TGCGCA	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	583, 785
PkrI	GCNGC	6 cut(s)	19, 151, 163, 278, 373, 705
PleI	GAGTC	4 cut(s)	328, 474, 676, 706
PpsI	GAGTC	4 cut(s)	328, 474, 676, 706
PpuMI	RGGWCCY	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	293, 358
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	6 cut(s)	51, 64, 99, 291, 292, 313
PspPPI	RGGWCCY	1 cut(s)	313
PspXI	VCTCGAGB	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	486, 546
SatI	GCNGC	6 cut(s)	18, 150, 162, 277, 372, 704
Sau3AI	GATC	3 cut(s)	216, 556, 765
Sau96I	GGNCC	6 cut(s)	51, 64, 99, 291, 292, 313
SchI	GAGTC	4 cut(s)	329, 475, 676, 707
ScrFI	CCNGG	2 cut(s)	273, 416
SduI	GDGCHC	2 cut(s)	295, 449
SfaNI	GCATC	2 cut(s)	394, 645
Sfr274I	CTCGAG	1 cut(s)	317
SinI	GGWCC	3 cut(s)	51, 99, 313
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	395, 639, 790
StyD4I	CCNGG	2 cut(s)	271, 414
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	2 cut(s)	147, 456
TaqI	TCGA	4 cut(s)	219, 318, 378, 581
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	506
TauI	GCSGC	4 cut(s)	20, 152, 164, 279
TfiI	GAWTC	2 cut(s)	583, 785
Tru1I	TTAA	2 cut(s)	486, 546
Tru9I	TTAA	2 cut(s)	486, 546
TscAI	CASTG	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	371, 703
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	295, 689
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	51, 99, 313
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	3 cut(s)	395, 639, 790
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.