Rmu_sc0006124.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006124.1
OG0001209
Physical Location & Seq
Reverse (-)
10971 .. 11942
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006124.1_g000002.1.cds

Sequence Viewer

Length: 972 bp
atgtccgccgccctccccaccaaaccccgccgggtcccacccccctgctggacccaggacgaggcccgctccctcatcctcgcctaccgcgaccgctggttcgctctccgccgcaccaatctcaaatccgccgactgggaccacgtcgccgccgccaccgccgccgaggctccctcctcccctcccaagaccgcgctgcagtgccgtcataagatggagaagctccgcaagcggttccgcgctgagaagcagcgggcttctgggtacccgggtcggttttcctcgtcgtgggctttgtttcatctcatggatgaaatggagtccggcccggatccgggattggatagtggtggtgagtttggaggtgggttttcgttaaaggctcgtaatttggtgaaatttaatggaaatgttggtagggattttagtcctgatgttgatgagaattctagcttttattctgaagctgaagattatgttaatcaagggtttaggccaaagagtaatggcaagactgatgtgaatcttaagcacagtttcaggcaacatggggactatggagttgatattagaagtgatagggattttgtacctgccggttttcggccaaagagtagtggcattgttgatgggaatgcaaagcgcaatgtgcgttttaaggagtttgatgggtattcttgtttatcaggatcaaagtttgttgacaagagtagtgttgttgggattaagagagatatggatcctgttgaagacttggcttcatcgattatgcggttgggagaagggtttgtgaggatggagaaaatgaagatggaaatgacaatggagattgagaagatgcgaatggagatggagctgaagcgtaatgaggccatgatcgaatcccaccagcagattgtggatgcttttgtgaatgcattattggaaaggaagaggaaaaagaaggcgaaggtggagtcttcccatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

323

Amino Acids

36.56

Weight (kDa)

9.41

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
Acc65I GGTACC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 3 cut(s) 90, 194, 240
AclWI GGATC 5 cut(s) 326, 339, 697, 734, 747
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 2 cut(s) 398, 445
AcuI CTGAAG 3 cut(s) 483, 489, 878
AfaI GTAC 2 cut(s) 266, 591
AfiI CCNNNNNNNGG 7 cut(s) 48, 61, 135, 288, 334, 335, 603
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 1 cut(s) 749
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 54
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 4 cut(s) 223, 453, 467, 856
AluI AGCT 4 cut(s) 223, 453, 467, 856
AlwI GGATC 5 cut(s) 326, 339, 697, 734, 747
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 5 cut(s) 63, 325, 494, 605, 870
ApeKI GCWGC 2 cut(s) 196, 250
ApoI RAATTY 2 cut(s) 398, 445
ArsI GACNNNNNNTTYG 3 cut(s) 83, 115, 941
Asp718I GGTACC 1 cut(s) 264
AspLEI GCGC 3 cut(s) 196, 242, 645
AspS9I GGNCC 5 cut(s) 34, 51, 64, 139, 326
AsuC2I CCSGG 5 cut(s) 32, 269, 270, 329, 336
AsuHPI GGTGA 2 cut(s) 365, 406
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 3 cut(s) 34, 51, 139
BaeI ACNNNNGTAYC 2 cut(s) 256, 289
BamHI GGATCC 2 cut(s) 331, 739
BanI GGYRCC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 756, 951
BbvI GCAGC 2 cut(s) 183, 262
BccI CCATC 6 cut(s) 208, 623, 662, 790, 805, 844
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 56
BcnI CCSGG 5 cut(s) 32, 269, 270, 329, 336
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 601
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 7 cut(s) 9, 112, 150, 153, 162, 197, 251
BlsI GCNGC 7 cut(s) 10, 113, 151, 154, 163, 198, 252
Bme1390I CCNGG 6 cut(s) 32, 56, 269, 270, 329, 336
Bme18I GGWCC 3 cut(s) 34, 51, 139
BmeT110I CYCGRG 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 5 cut(s) 34, 51, 64, 139, 326
BmiI GGNNCC 9 cut(s) 35, 36, 53, 140, 171, 236, 266, 333, 741
BmrFI CCNGG 6 cut(s) 32, 56, 269, 270, 329, 336
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 828, 892
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 756, 951
BplI GAGNNNNNCTC 4 cut(s) 53, 85, 158, 190
BpuMI CCSGG 5 cut(s) 32, 269, 270, 329, 336
Bsa29I ATCGAT 1 cut(s) 764
BsaBI GATNNNNATC 2 cut(s) 522, 738
BsaJI CCNNGG 3 cut(s) 54, 165, 268
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 61, 135, 288, 334, 335, 603
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 2 cut(s) 522, 738
BseBI CCWGG 1 cut(s) 56
BseCI ATCGAT 1 cut(s) 764
BseDI CCNNGG 3 cut(s) 54, 165, 268
BseGI GGATG 4 cut(s) 75, 316, 801, 907
BseJI GATNNNNATC 2 cut(s) 522, 738
BseLI CCNNNNNNNGG 7 cut(s) 48, 61, 135, 288, 334, 335, 603
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 183, 262
Bsh1236I CGCG 3 cut(s) 90, 194, 240
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 65, 327, 496, 607, 872
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 6 cut(s) 31, 269, 324, 329, 335, 597
BslFI GGGAC 3 cut(s) 20, 152, 566
BslI CCNNNNNNNGG 7 cut(s) 48, 61, 135, 288, 334, 335, 603
BsmFI GGGAC 3 cut(s) 20, 152, 566
BsmI GAATGC 2 cut(s) 640, 919
BsnI GGCC 5 cut(s) 65, 327, 496, 607, 872
BsoBI CYCGRG 1 cut(s) 268
Bsp143I GATC 4 cut(s) 331, 689, 739, 876
BspANI GGCC 5 cut(s) 65, 327, 496, 607, 872
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 764
BspFNI CGCG 3 cut(s) 90, 194, 240
BspLI GGNNCC 9 cut(s) 35, 36, 53, 140, 171, 236, 266, 333, 741
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 5 cut(s) 326, 339, 697, 734, 747
BspT107I GGYRCC 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 3 cut(s) 54, 165, 268
BssMI GATC 4 cut(s) 331, 689, 739, 876
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 926
BstAFI CTTAAG 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 67, 230, 255
BstDEI CTNAG 2 cut(s) 243, 969
BstF5I GGATG 4 cut(s) 75, 316, 801, 907
BstFNI CGCG 3 cut(s) 90, 194, 240
BstHHI GCGC 3 cut(s) 196, 242, 645
BstKTI GATC 4 cut(s) 334, 692, 742, 879
BstMBI GATC 4 cut(s) 331, 689, 739, 876
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 158, 161, 167, 229, 649
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 6 cut(s) 30, 54, 267, 268, 327, 334
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 3 cut(s) 90, 194, 240
BstV1I GCAGC 2 cut(s) 183, 262
BstV2I GAAGAC 2 cut(s) 756, 951
BstX2I RGATCY 2 cut(s) 331, 739
BstYI RGATCY 2 cut(s) 331, 739
Bsu15I ATCGAT 1 cut(s) 764
BsuRI GGCC 5 cut(s) 65, 327, 496, 607, 872
BsuTUI ATCGAT 1 cut(s) 764
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 4 cut(s) 75, 316, 801, 907
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 3 cut(s) 67, 230, 255
CfoI GCGC 3 cut(s) 196, 242, 645
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 5 cut(s) 34, 51, 64, 139, 326
Cfr9I CCCGGG 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 764
Csp6I GTAC 2 cut(s) 265, 590
CviAII CATG 4 cut(s) 307, 548, 874, 965
CviQI GTAC 2 cut(s) 265, 590
DdeI CTNAG 2 cut(s) 243, 969
DpnI GATC 4 cut(s) 333, 691, 741, 878
DpnII GATC 4 cut(s) 331, 689, 739, 876
EaeI YGGCCR 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
EciI GGCGGA 2 cut(s) 98, 118
Eco47I GGWCC 3 cut(s) 34, 51, 139
Eco57I CTGAAG 3 cut(s) 483, 489, 878
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 919
FaeI CATG 4 cut(s) 310, 551, 877, 968
FaiI YATR 9 cut(s) 210, 308, 477, 549, 558, 737, 770, 875, 966
FaqI GGGAC 3 cut(s) 20, 152, 566
FatI CATG 4 cut(s) 306, 547, 873, 964
FauI CCCGC 3 cut(s) 35, 74, 246
Fnu4HI GCNGC 7 cut(s) 9, 112, 150, 153, 162, 197, 251
FokI GGATG 4 cut(s) 62, 323, 808, 914
Fsp4HI GCNGC 7 cut(s) 9, 112, 150, 153, 162, 197, 251
FspBI CTAG 1 cut(s) 450
GlaI GCGC 3 cut(s) 195, 241, 644
GluI GCNGC 7 cut(s) 9, 112, 150, 153, 162, 197, 251
HaeIII GGCC 5 cut(s) 65, 327, 496, 607, 872
HapII CCGG 6 cut(s) 31, 269, 324, 329, 335, 597
HhaI GCGC 3 cut(s) 196, 242, 645
Hin1II CATG 4 cut(s) 310, 551, 877, 968
Hin6I GCGC 3 cut(s) 194, 240, 643
HinP1I GCGC 3 cut(s) 194, 240, 643
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 4 cut(s) 320, 523, 881, 956
HpaII CCGG 6 cut(s) 31, 269, 324, 329, 335, 597
HphI GGTGA 2 cut(s) 365, 406
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 2 cut(s) 431, 687
Hpy8I GTNNAC 1 cut(s) 703
Hpy99I CGWCG 2 cut(s) 149, 289
HpyAV CCTTC 3 cut(s) 776, 937, 943
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 199, 638, 917
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 161, 167, 229, 649
HpyF3I CTNAG 2 cut(s) 243, 969
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 4 cut(s) 310, 551, 877, 968
HspAI GCGC 3 cut(s) 194, 240, 643
KflI GGGWCCC 1 cut(s) 34
KpnI GGTACC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 331, 689, 739, 876
LmnI GCTCC 4 cut(s) 74, 175, 228, 853
Lsp1109I GCAGC 2 cut(s) 183, 262
LweI GCATC 2 cut(s) 828, 892
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 144
MalI GATC 4 cut(s) 333, 691, 741, 878
MbiI CCGCTC 1 cut(s) 69
MboI GATC 4 cut(s) 331, 689, 739, 876
MboII GAAGA 6 cut(s) 482, 761, 820, 847, 943, 951
MflI RGATCY 2 cut(s) 331, 739
MluCI AATT 3 cut(s) 388, 398, 445
MlyI GAGTC 2 cut(s) 329, 965
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 6 cut(s) 377, 402, 480, 528, 657, 726
MspA1I CMGCKG 2 cut(s) 96, 253
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 6 cut(s) 31, 269, 324, 329, 335, 597
MspR9I CCNGG 6 cut(s) 32, 56, 269, 270, 329, 336
Mva1269I GAATGC 2 cut(s) 640, 919
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 3 cut(s) 90, 194, 240
MwoI GCNNNNNNNGC 5 cut(s) 158, 161, 167, 229, 649
NciI CCSGG 5 cut(s) 32, 269, 270, 329, 336
NdeII GATC 4 cut(s) 331, 689, 739, 876
NlaIII CATG 4 cut(s) 310, 551, 877, 968
NlaIV GGNNCC 9 cut(s) 35, 36, 53, 140, 171, 236, 266, 333, 741
NmeAIII GCCGAG 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 2 cut(s) 640, 919
PfeI GAWTC 2 cut(s) 523, 881
PflFI GACNNNGTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 7 cut(s) 10, 113, 151, 154, 163, 198, 252
PleI GAGTC 2 cut(s) 328, 964
PpsI GAGTC 2 cut(s) 328, 964
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 9 cut(s) 35, 36, 53, 140, 171, 236, 266, 333, 741
PspPI GGNCC 5 cut(s) 34, 51, 64, 139, 326
PspPPI RGGWCCY 1 cut(s) 34
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 2 cut(s) 331, 739
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 266, 591
RsaNI GTAC 2 cut(s) 265, 590
SaqAI TTAA 6 cut(s) 377, 402, 480, 528, 657, 726
SatI GCNGC 7 cut(s) 9, 112, 150, 153, 162, 197, 251
Sau3AI GATC 4 cut(s) 331, 689, 739, 876
Sau96I GGNCC 5 cut(s) 34, 51, 64, 139, 326
SchI GAGTC 2 cut(s) 329, 965
ScrFI CCNGG 6 cut(s) 32, 56, 269, 270, 329, 336
SetI ASST 8 cut(s) 147, 225, 367, 455, 469, 595, 858, 954
SfaNI GCATC 2 cut(s) 828, 892
SfcI CTRYAG 1 cut(s) 197
SinI GGWCC 3 cut(s) 34, 51, 139
SmaI CCCGGG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 3 cut(s) 388, 398, 445
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 6 cut(s) 30, 54, 267, 268, 327, 334
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 764, 879
TasI AATT 3 cut(s) 388, 398, 445
TauI GCSGC 5 cut(s) 11, 114, 152, 155, 164
TfiI GAWTC 2 cut(s) 523, 881
Tru1I TTAA 6 cut(s) 377, 402, 480, 528, 657, 726
Tru9I TTAA 6 cut(s) 377, 402, 480, 528, 657, 726
TscAI CASTG 1 cut(s) 206
TseI GCWGC 2 cut(s) 196, 250
TspDTI ATGAA 4 cut(s) 290, 327, 750, 821
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 1 cut(s) 206
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 34, 51, 139
XapI RAATTY 2 cut(s) 398, 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
XmaI CCCGGG 1 cut(s) 268
XspI CTAG 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.