RchiOBHm_Chr6g0286391
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001209
Physical Location & Seq
Reverse (-)
49795290 .. 49796565
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25687

Sequence Viewer

Length: 405 bp
ATGTCCATCGTCGTCACCGCCGCTCACCCCCTTGCTGGACCCAGGACGAGGCCCGCTCCCTCATCCTCGCCGATCGTGACCGCTGGTTGGCTCTCCACCGTACCAATCTTAAATCCGCCAACTGGGACCACGTCGCCGCTGCCACCGCTTCCTTGGCTCCCTCCTCGCCGCCCAAGATCGCGTTGCAGTGCTGTCATAAGCCTCGTCGTGGCTTTGTTTCATCTCATGGATCAAATGGAATCCGACCCAGATCGGGAATTGGATAATGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTGATGGAAATGTTGATAGAGATTTTAGTCCTAATGTTGATGAGAATTCTAGCTTTTATTCTAGCTCAGGGAAGAAAAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

134

Amino Acids

14.39

Weight (kDa)

8.74

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 23, 56
AccII CGCG 1 cut(s) 181
AciI CCGC 8 cut(s) 18, 21, 54, 81, 116, 137, 146, 169
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 2 cut(s) 317, 364
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 6 cut(s) 35, 48, 87, 122, 208, 253
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 2 cut(s) 372, 384
AluI AGCT 2 cut(s) 372, 384
AlwI GGATC 1 cut(s) 237
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 2 cut(s) 317, 364
AspS9I GGNCC 3 cut(s) 38, 51, 126
AsuHPI GGTGA 4 cut(s) 7, 17, 284, 325
AvaII GGWCC 2 cut(s) 38, 126
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 14, 317
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 2 cut(s) 369, 381
BisI GCNGC 4 cut(s) 21, 137, 140, 169
BlsI GCNGC 4 cut(s) 22, 138, 141, 170
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 2 cut(s) 38, 126
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 38, 51, 126
BmiI GGNNCC 3 cut(s) 40, 127, 158
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 40, 72
Bpu10I CCTNAGC 1 cut(s) 385
BsaJI CCNNGG 2 cut(s) 41, 152
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 48, 87, 122, 208, 253
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 41, 152
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 6 cut(s) 35, 48, 87, 122, 208, 253
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 6 cut(s) 35, 48, 87, 122, 208, 253
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 4 cut(s) 72, 176, 229, 250
BspACI CCGC 8 cut(s) 18, 21, 54, 81, 116, 137, 146, 169
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 398
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 40, 127, 158
BspPI GGATC 1 cut(s) 237
BsrBI CCGCTC 2 cut(s) 23, 56
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 41, 152
BssMI GATC 4 cut(s) 72, 176, 229, 250
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 4 cut(s) 75, 179, 232, 253
BstMBI GATC 4 cut(s) 72, 176, 229, 250
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 145, 154
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 52
BtrI CACGTC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 54
Cfr13I GGNCC 3 cut(s) 38, 51, 126
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 52, 91, 157, 201, 212, 302, 372, 384
CviKI_1 RGCY 8 cut(s) 52, 91, 157, 201, 212, 302, 372, 384
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 385
DpnI GATC 4 cut(s) 74, 178, 231, 252
DpnII GATC 4 cut(s) 72, 176, 229, 250
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 38, 126
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 197, 227
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 21, 137, 140, 169
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 4 cut(s) 21, 137, 140, 169
FspBI CTAG 2 cut(s) 369, 381
GluI GCNGC 4 cut(s) 21, 137, 140, 169
HaeIII GGCC 1 cut(s) 52
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 239
HphI GGTGA 4 cut(s) 7, 17, 284, 325
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 76, 254
Hpy99I CGWCG 3 cut(s) 14, 136, 209
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 154
HpyF3I CTNAG 1 cut(s) 385
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 72, 176, 229, 250
LmnI GCTCC 2 cut(s) 61, 162
LpnPI CCDG 7 cut(s) 21, 28, 55, 69, 108, 261, 372
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 2 cut(s) 369, 381
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 13, 76
MalI GATC 4 cut(s) 74, 178, 231, 252
MbiI CCGCTC 2 cut(s) 23, 56
MboI GATC 4 cut(s) 72, 176, 229, 250
MboII GAAGA 1 cut(s) 403
MluCI AATT 4 cut(s) 257, 307, 317, 364
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 7 cut(s) 42, 70, 76, 171, 174, 212, 275
MseI TTAA 2 cut(s) 110, 296
MspA1I CMGCKG 2 cut(s) 83, 139
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 145, 154
NdeII GATC 4 cut(s) 72, 176, 229, 250
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 3 cut(s) 40, 127, 158
NmuCI GTSAC 2 cut(s) 13, 76
PfeI GAWTC 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 22, 138, 141, 170
Ple19I CGATCG 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 40, 127, 158
PspPI GGNCC 3 cut(s) 38, 51, 126
PsyI GACNNNGTC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 110, 296
SatI GCNGC 4 cut(s) 21, 137, 140, 169
Sau3AI GATC 4 cut(s) 72, 176, 229, 250
Sau96I GGNCC 3 cut(s) 38, 51, 126
ScrFI CCNGG 1 cut(s) 43
SetI ASST 4 cut(s) 134, 286, 374, 386
SinI GGWCC 2 cut(s) 38, 126
Sse9I AATT 4 cut(s) 257, 307, 317, 364
SsiI CCGC 8 cut(s) 18, 21, 54, 81, 116, 137, 146, 169
SspMI CTAG 2 cut(s) 369, 381
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 134
TasI AATT 4 cut(s) 257, 307, 317, 364
TauI GCSGC 3 cut(s) 23, 139, 171
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 110, 296
Tru9I TTAA 2 cut(s) 110, 296
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 2 cut(s) 13, 76
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 2 cut(s) 13, 76
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 38, 126
XapI RAATTY 2 cut(s) 317, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XspI CTAG 2 cut(s) 369, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.