Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8301667.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

81 .. 896

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8301667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ctgtgctggaccgacgacgaggcccaagccctcatctccgtcttcaaggacaagtggtcctccctcggccgcaccaatctcaaagccaacgactgggatgacgtcgccgccaccctcgccgcccaattccccctcgtctccccctccaagaccgccgcgcagtgccacaacaagatcgagaagctccgcaaacggtaccgctccgagaagcagcgggcctcgacccgacccggtcggttctcgccttgggctttgtatcggtttatggaggaattggaaggcgagtctggtaaggggtcgggccacacggcccgtaaaggtgaggggaattcgagttctaggtttttagctgatttggatgaatttgttgatgtacggagtggtggtggtgatgctggttttcctgtgaaatcattaggtcataggaatttggcgcctttgtttagtcctaagatgaagttgaagaagaatgaaagctcagggtttcttcgaaaattcggaggagtggagtctagtggtgttggtgttaacgatttgggagggagttcgggtttgttgaggagtgttagagaggttgatccggttgaagagatggtttcgtcgattcagttgcttggggagaagtatatgaaggtggagaagaggaagatggagatggctagggagattgtgatgatgcaaatggacatggaaatgaagcaaactcaggttattatggaatcgcagcagcagatagtgaatgcttgtgtgagtgcattgttggacagcaagaagaagaagaagaggaagatgaaggccgtgtcgactgattcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

271

Amino Acids

30.15

Weight (kDa)

9.52

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	2 cut(s)	195, 433
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	803
AccII	CGCG	1 cut(s)	158
AciI	CCGC	8 cut(s)	70, 108, 120, 153, 156, 187, 199, 214
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	4 cut(s)	328, 362, 427, 494
AcyI	GRCGYC	2 cut(s)	102, 434
AfaI	GTAC	2 cut(s)	197, 375
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	46, 463, 587
AhdI	GACNNNNNGTC	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	3 cut(s)	184, 350, 477
AluI	AGCT	3 cut(s)	184, 350, 477
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	6 cut(s)	21, 67, 216, 301, 309, 795
ApeKI	GCWGC	3 cut(s)	211, 724, 727
ApoI	RAATTY	4 cut(s)	328, 362, 427, 494
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	160, 436
AspS9I	GGNCC	6 cut(s)	9, 22, 57, 216, 301, 310
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	332, 401
AsuII	TTCGAA	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	9, 57
BanI	GGYRCC	2 cut(s)	195, 433
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	223, 736, 739
BccI	CCATC	3 cut(s)	586, 643, 649
BceAI	ACGGC	2 cut(s)	324, 782
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	4 cut(s)	339, 513, 660, 814
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	7 cut(s)	70, 108, 120, 156, 212, 725, 728
BlsI	GCNGC	7 cut(s)	71, 109, 121, 157, 213, 726, 729
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	9, 57
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	6 cut(s)	9, 22, 57, 216, 301, 310
BmiI	GGNNCC	2 cut(s)	197, 435
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	382, 666
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	231
BsaHI	GRCGYC	2 cut(s)	102, 434
BsaJI	CCNNGG	2 cut(s)	64, 245
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 535, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	64, 245
BseGI	GGATG	2 cut(s)	103, 364
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	492, 719
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	516, 574
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	223, 736, 739
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	2 cut(s)	70, 235
BshFI	GGCC	6 cut(s)	23, 69, 218, 303, 311, 797
BshNI	GGYRCC	2 cut(s)	195, 433
BsiEI	CGRYCG	2 cut(s)	70, 235
BsiSI	CCGG	2 cut(s)	231, 581
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	6 cut(s)	23, 69, 218, 303, 311, 797
Bsp119I	TTCGAA	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	174, 577
BspACI	CCGC	8 cut(s)	70, 108, 120, 153, 156, 187, 199, 214
BspANI	GGCC	6 cut(s)	23, 69, 218, 303, 311, 797
BspCNI	CTCAG	2 cut(s)	491, 718
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	197, 435
BspPI	GGATC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	490
BspT107I	GGYRCC	2 cut(s)	195, 433
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	64, 245
BssMI	GATC	2 cut(s)	174, 577
BssNI	GRCGYC	2 cut(s)	102, 434
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	3 cut(s)	582, 635, 776
BstACI	GRCGYC	2 cut(s)	102, 434
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	450, 478, 705
BstF5I	GGATG	2 cut(s)	103, 364
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	160, 436
BstKTI	GATC	2 cut(s)	177, 580
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	2 cut(s)	174, 577
BstMCI	CGRYCG	2 cut(s)	70, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	223, 736, 739
BstV2I	GAAGAC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	6 cut(s)	23, 69, 218, 303, 311, 797
BtsCI	GGATG	2 cut(s)	103, 364
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	2 cut(s)	160, 436
Cfr13I	GGNCC	6 cut(s)	9, 22, 57, 216, 301, 310
Csp6I	GTAC	2 cut(s)	196, 374
CviAII	CATG	1 cut(s)	688
CviQI	GTAC	2 cut(s)	196, 374
DdeI	CTNAG	3 cut(s)	450, 478, 705
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	2 cut(s)	176, 579
DpnII	GATC	2 cut(s)	174, 577
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	3 cut(s)	582, 635, 776
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	3 cut(s)	582, 635, 776
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	9, 57
Eco52I	CGGCCG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	1 cut(s)	691
FaiI	YATR	6 cut(s)	266, 423, 627, 629, 689, 716
FatI	CATG	1 cut(s)	687
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	7 cut(s)	70, 108, 120, 156, 212, 725, 728
FokI	GGATG	2 cut(s)	110, 371
Fsp4HI	GCNGC	7 cut(s)	70, 108, 120, 156, 212, 725, 728
FspBI	CTAG	4 cut(s)	339, 513, 660, 814
GlaI	GCGC	2 cut(s)	159, 435
GluI	GCNGC	7 cut(s)	70, 108, 120, 156, 212, 725, 728
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	6 cut(s)	23, 69, 218, 303, 311, 797
HapII	CCGG	2 cut(s)	231, 581
HhaI	GCGC	2 cut(s)	160, 436
Hin1I	GRCGYC	2 cut(s)	102, 434
Hin1II	CATG	1 cut(s)	691
Hin6I	GCGC	2 cut(s)	158, 434
HinP1I	GCGC	2 cut(s)	158, 434
HincII	GTYRAC	2 cut(s)	529, 804
HindII	GTYRAC	2 cut(s)	529, 804
HinfI	GANTC	5 cut(s)	284, 509, 604, 719, 809
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	2 cut(s)	231, 581
HphI	GGTGA	2 cut(s)	332, 401
Hpy166II	GTNNAC	2 cut(s)	529, 804
Hpy188I	TCNGA	2 cut(s)	205, 500
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	529, 804
Hpy99I	CGWCG	4 cut(s)	17, 20, 107, 604
HpyAV	CCTTC	3 cut(s)	272, 625, 787
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	679, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	450, 478, 705
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	102, 434
Hsp92II	CATG	1 cut(s)	691
HspAI	GCGC	2 cut(s)	158, 434
KasI	GGCGCC	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	174, 577
LmnI	GCTCC	2 cut(s)	189, 206
LpnPI	CCDG	8 cut(s)	79, 244, 273, 381, 417, 465, 594, 692
Lsp1109I	GCAGC	3 cut(s)	223, 736, 739
LweI	GCATC	2 cut(s)	382, 666
MaeI	CTAG	4 cut(s)	339, 513, 660, 814
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	176, 579
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	2 cut(s)	174, 577
MluCI	AATT	6 cut(s)	125, 272, 328, 362, 427, 494
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	293, 518
MmeI	TCCRAC	1 cut(s)	741
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	2 cut(s)	231, 581
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	745
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	174, 577
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	2 cut(s)	197, 435
NmeAIII	GCCGAG	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	490
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	3 cut(s)	604, 719, 809
PflFI	GACNNNGTC	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	71, 109, 121, 157, 213, 726, 729
PleI	GAGTC	2 cut(s)	292, 517
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	2 cut(s)	292, 517
PspN4I	GGNNCC	2 cut(s)	197, 435
PspPI	GGNCC	6 cut(s)	9, 22, 57, 216, 301, 310
PsyI	GACNNNGTC	1 cut(s)	231
RsaI	GTAC	2 cut(s)	197, 375
RsaNI	GTAC	2 cut(s)	196, 374
RseI	CAYNNNNRTG	1 cut(s)	692
SalI	GTCGAC	1 cut(s)	802
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	7 cut(s)	70, 108, 120, 156, 212, 725, 728
Sau3AI	GATC	2 cut(s)	174, 577
Sau96I	GGNCC	6 cut(s)	9, 22, 57, 216, 301, 310
SchI	GAGTC	2 cut(s)	293, 518
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	382, 666
SfoI	GGCGCC	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	490
SinI	GGWCC	2 cut(s)	9, 57
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	6 cut(s)	125, 272, 328, 362, 427, 494
SsiI	CCGC	8 cut(s)	70, 108, 120, 153, 156, 187, 199, 214
SspDI	GGCGCC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	339, 513, 660, 814
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	6 cut(s)	177, 221, 332, 490, 602, 803
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	125, 272, 328, 362, 427, 494
TauI	GCSGC	4 cut(s)	72, 110, 122, 158
TfiI	GAWTC	3 cut(s)	604, 719, 809
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	3 cut(s)	211, 724, 727
TspDTI	ATGAA	6 cut(s)	375, 470, 486, 644, 710, 806
TspGWI	ACGGA	2 cut(s)	28, 391
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	9, 57
XapI	RAATTY	4 cut(s)	328, 362, 427, 494
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	4 cut(s)	339, 513, 660, 814
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.