Rh2BG278600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001209
Physical Location & Seq
Reverse (-)
30377624 .. 30377896
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG278600.1

Sequence Viewer

Length: 273 bp
ATGTTCAGCATCACCGGCCCCCACACCATCGCCATCAACCACATCATCGAGGAGAAGGATAAGAGTTGCGGGTCTGGAGACCCATACGCCGTCACCTCCAGCAGGGGGATAGGACTGAGACCAATCACCGCCGCCACCTGTCACAGCAGCAATAGGAAGAAGAGATCCAAACTCCGACCAAATCACCCTACCGCCACCGCACCACTCACCACCAACCTTGACTGTAGTATCACCATCACCGTCGCTAACCAAACACCCAGCACAACTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.62

Weight (kDa)

9.81

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 69, 129, 132, 192, 198
AclWI GGATC 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 102, 105
Alw26I GTCTC 2 cut(s) 72, 112
AlwI GGATC 1 cut(s) 159
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 7 cut(s) 4, 85, 118, 176, 199, 223, 229
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BbvI GCAGC 1 cut(s) 159
BccI CCATC 3 cut(s) 35, 41, 242
BceAI ACGGC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 72, 112
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 2 cut(s) 132, 148
BlsI GCNGC 2 cut(s) 133, 149
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 82, 96
BsaI GGTCTC 2 cut(s) 72, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 105
Bse118I RCCGGY 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 102, 105
BseMII CTCAG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 102, 105
BsmAI GTCTC 2 cut(s) 72, 112
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 2 cut(s) 72, 112
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 5 cut(s) 69, 129, 132, 192, 198
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 159
BspTNI GGTCTC 2 cut(s) 72, 112
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 224, 241
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 100
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 72, 112
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviJI RGCY 1 cut(s) 18
CviKI_1 RGCY 1 cut(s) 18
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 72, 112
EcoNI CCTNNNNNAGG 1 cut(s) 100
FaiI YATR 1 cut(s) 85
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 132, 148
Fsp4HI GCNGC 2 cut(s) 132, 148
GluI GCNGC 2 cut(s) 132, 148
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 2 cut(s) 82, 96
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 15
HpaII CCGG 1 cut(s) 15
HphI GGTGA 7 cut(s) 4, 85, 118, 176, 199, 223, 229
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 224, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 116
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 28, 60, 88, 112, 151
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 91, 140
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 2 cut(s) 169, 172
MflI RGATCY 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 2 cut(s) 43, 106
MspI CCGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 91, 140
PkrI GCNGC 2 cut(s) 133, 149
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 164
SatI GCNGC 2 cut(s) 132, 148
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 17
SetI ASST 3 cut(s) 98, 140, 219
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 223
SgeI CNNG 8 cut(s) 27, 61, 82, 87, 111, 115, 150, 230
SsiI CCGC 5 cut(s) 69, 129, 132, 192, 198
TaaI ACNGT 2 cut(s) 224, 241
TaqI TCGA 1 cut(s) 48
TauI GCSGC 1 cut(s) 134
TseFI GTSAC 2 cut(s) 91, 140
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 2 cut(s) 91, 140
XagI CCTNNNNNAGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.