Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001711.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

144694 .. 144957

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001711.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgtctgtctctcatctctctctctgcatgctctcctttatcttcaaggaccacgtcgccgccgccaaggcttccgcggctccatccttgctgcccaagacagcgttgcagtgtcgtcataagatgaagaagctccgcaagcggtaccgtgctgagaagcagcgggcttctaggtacccgagtcggtcttcctcctcgtcgtgggttttgtttcatctcatggatgacatggagtctgacccggattggggattggatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

9.86

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	144, 174
AccB1I	GGYRCC	2 cut(s)	144, 174
AccII	CGCG	1 cut(s)	77
AciI	CCGC	7 cut(s)	60, 63, 75, 77, 136, 142, 163
AfaI	GTAC	2 cut(s)	146, 176
AfiI	CCNNNNNNNGG	3 cut(s)	201, 247, 248
AgsI	TTSAA	1 cut(s)	46
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	91, 160
Asp718I	GGTACC	2 cut(s)	144, 174
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanI	GGYRCC	2 cut(s)	144, 174
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	78, 172
BccI	CCATC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	5 cut(s)	60, 63, 78, 92, 161
BlsI	GCNGC	5 cut(s)	61, 64, 79, 93, 162
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	49
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	81, 146, 176
BmrFI	CCNGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	66, 75
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 247, 248
BseDI	CCNNGG	2 cut(s)	66, 75
BseGI	GGATG	2 cut(s)	83, 229
BseLI	CCNNNNNNNGG	3 cut(s)	201, 247, 248
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	78, 172
Bsh1236I	CGCG	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	144, 174
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	201, 247, 248
BsmAI	GTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	178
BspACI	CCGC	7 cut(s)	60, 63, 75, 77, 136, 142, 163
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	81, 146, 176
BspT107I	GGYRCC	2 cut(s)	144, 174
BssECI	CCNNGG	2 cut(s)	66, 75
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	29, 140, 165
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	83, 229
BstFNI	CGCG	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 139
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	78, 172
BstV2I	GAAGAC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	83, 229
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	29, 140, 165
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	145, 175
CviAII	CATG	3 cut(s)	28, 220, 229
CviJI	RGCY	4 cut(s)	71, 80, 133, 167
CviKI_1	RGCY	4 cut(s)	71, 80, 133, 167
CviQI	GTAC	2 cut(s)	145, 175
DdeI	CTNAG	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1105I	GACNNNNNGTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	31, 223, 232
FaiI	YATR	6 cut(s)	29, 120, 221, 230, 260, 262
FatI	CATG	3 cut(s)	27, 219, 228
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	60, 63, 78, 92, 161
FokI	GGATG	2 cut(s)	70, 236
Fsp4HI	GCNGC	5 cut(s)	60, 63, 78, 92, 161
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	5 cut(s)	60, 63, 78, 92, 161
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	3 cut(s)	31, 223, 232
HinfI	GANTC	2 cut(s)	181, 233
HpaII	CCGG	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	59, 202
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	27, 109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 139
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	31, 223, 232
KpnI	GGTACC	2 cut(s)	148, 178
KspI	CCGCGG	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	85, 138
LpnPI	CCDG	1 cut(s)	255
Lsp1109I	GCAGC	2 cut(s)	78, 172
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	54
MboII	GAAGA	3 cut(s)	34, 139, 180
MlyI	GAGTC	2 cut(s)	190, 242
MnlI	CCTC	2 cut(s)	202, 205
MspA1I	CMGCKG	2 cut(s)	77, 163
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 139
NciI	CCSGG	1 cut(s)	242
NlaIII	CATG	3 cut(s)	31, 223, 232
NlaIV	GGNNCC	3 cut(s)	81, 146, 176
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	61, 64, 79, 93, 162
PleI	GAGTC	2 cut(s)	189, 241
PpsI	GAGTC	2 cut(s)	189, 241
PspN4I	GGNNCC	3 cut(s)	81, 146, 176
PspPI	GGNCC	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	146, 176
RsaNI	GTAC	2 cut(s)	145, 175
SacII	CCGCGG	1 cut(s)	78
SatI	GCNGC	5 cut(s)	60, 63, 78, 92, 161
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	190, 242
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	3 cut(s)	57, 135, 176
Sfr303I	CCGCGG	1 cut(s)	78
SgrBI	CCGCGG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	31
SsiI	CCGC	7 cut(s)	60, 63, 75, 77, 136, 142, 163
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	174
TauI	GCSGC	3 cut(s)	62, 65, 80
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	2 cut(s)	91, 160
TspDTI	ATGAA	2 cut(s)	140, 203
TspRI	CASTG	1 cut(s)	116
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.