Prupe.5G055100_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001209
Physical Location & Seq
Forward (+)
5870569 .. 5872682
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G055100.1

Sequence Viewer

Length: 1038 bp
ATGGCCGCGCCCCCCCAACCTAAGCCTCGCAAGTTCCCGCCACCCTGCTGGACCAATGACGAAGCGCAAGGCCTGATCTCCATCTACAAGGATACGTGGTCCGCTCTCGGCCGATCCAATCTCAGAGCCTCCGACTGGGAAACGGTGGCCGCCGCCCTGGCTAGCCGGTGCCCGCTAGTATCGCCGCCCAAGACCGCCATACAGTGCCGCCACAAGATGGAGAAGCTCCGGAAGCGCTACCGGAACGAGAAACAGCGCGGTTCAACGCATCCGGGTCGGTTTCTCTCTACCTGGGATCTTTTTCGGCCCATGTTTGACTTGGAATGTGAGGCTCCTGCCCTTTTTGGGTCCGACCCAGATCGGGAAACCCGGGTAGGTGTTCAATTTGGACGTGGGTTTCGGGTGAGAAAGGATGAAATTGTTAGGTATTTGGCTGAATCTGATCAGAACTTGAGCGACCCAGATGAGGAAACCTGGAAAGGTGCTGGCTTTAGAGGTGGGTTTCGGGTCAACGTTGGTGTTCGTGGTAAAGGAGGGGAGAATTCTAGCTTTTCAGCTGGTTTTGATCGATATGTGAGTCGAGGAAATGATGAGGCTCGTGGGTTTCCTGTAAAATCGTCGGGTGATAGGAATTTGGGGCCTTCAGAATTTGGGAGCAAGAGTTATGGCAAAACTTGTAATGAGAAGTTTAGCCCCAAGCGGAACTTGAAGCGTGATTGCAGCTATGGAGCTGGTACAAAAAGTGGGTTTTATAAGAAATTCAGAGGGGGTTTGGATTCTGATGGCGTTGGGAAAGAGGTGGAGGATCCGATTGGACAGATGGCTTCATCGGTTGAGTTTATGGGAGAAGTGTTTTTGAAGATGGAGAAGAAGAAGATGGAGATGGCAAGGGATATTGTAAAGATGAGGATGGAGATGGAAATGAGGCAAAATGAGCTCATAATGGAGTCACAGAAGCAGGTTTTGGCTGCCTGTGTGGATGCATTGTTGGAAAGCAAGAAGAAGAAGAAGATGAAGGTGGTGTCATCTGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

346

Amino Acids

38.78

Weight (kDa)

9.5

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
Acc36I ACCTGC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 2 cut(s) 8, 258
AccIII TCCGGA 1 cut(s) 228
AclI AACGTT 1 cut(s) 513
AclWI GGATC 4 cut(s) 108, 303, 800, 813
AcoI YGGCCR 3 cut(s) 3, 109, 147
AcsI RAATTY 4 cut(s) 541, 631, 647, 758
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 1 cut(s) 736
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 5 cut(s) 135, 217, 345, 361, 466
AgsI TTSAA 4 cut(s) 264, 383, 709, 859
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 3 cut(s) 156, 290, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 6 cut(s) 226, 549, 557, 723, 731, 937
AluI AGCT 6 cut(s) 226, 549, 557, 723, 731, 937
Alw21I GWGCWC 1 cut(s) 939
AlwI GGATC 4 cut(s) 108, 303, 800, 813
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 6 cut(s) 3, 70, 109, 147, 305, 638
ApeKI GCWGC 2 cut(s) 720, 968
ApoI RAATTY 4 cut(s) 541, 631, 647, 758
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 4 cut(s) 10, 67, 237, 258
AspS9I GGNCC 5 cut(s) 51, 99, 306, 348, 638
AsuC2I CCSGG 3 cut(s) 273, 370, 371
AsuHPI GGTGA 2 cut(s) 415, 635
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 3 cut(s) 51, 99, 348
BaeGI GKGCMC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 939
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 2 cut(s) 732, 955
BccI CCATC 9 cut(s) 89, 211, 776, 814, 856, 871, 877, 904, 910
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 3 cut(s) 158, 292, 475
BciVI GTATCC 1 cut(s) 85
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 3 cut(s) 273, 370, 371
BfaI CTAG 3 cut(s) 162, 176, 546
BfoI RGCGCY 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 949
BfuI GTATCC 1 cut(s) 85
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 7 cut(s) 6, 150, 153, 185, 208, 721, 969
BlsI GCNGC 7 cut(s) 7, 151, 154, 186, 209, 722, 970
Bme1390I CCNGG 6 cut(s) 158, 273, 292, 370, 371, 475
Bme18I GGWCC 3 cut(s) 51, 99, 348
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 51, 99, 306, 348, 638
BmiI GGNNCC 5 cut(s) 170, 333, 349, 639, 807
BmrFI CCNGG 6 cut(s) 158, 273, 292, 370, 371, 475
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 277, 970
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 472
BpuMI CCSGG 3 cut(s) 273, 370, 371
Bsa29I ATCGAT 1 cut(s) 568
BsaAI YACGTR 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 156, 291, 369
BsaWI WCCGGW 2 cut(s) 228, 240
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 217, 345, 361, 466
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 3 cut(s) 158, 292, 475
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 3 cut(s) 156, 291, 369
BseGI GGATG 4 cut(s) 268, 418, 915, 985
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 135, 217, 345, 361, 466
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 173
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 732, 955
Bsh1236I CGCG 2 cut(s) 8, 258
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 6 cut(s) 5, 72, 111, 149, 307, 640
BshNI GGYRCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 568
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 5 cut(s) 166, 229, 241, 272, 370
BslI CCNNNNNNNGG 5 cut(s) 135, 217, 345, 361, 466
BsnI GGCC 6 cut(s) 5, 72, 111, 149, 307, 640
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 173, 939
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
BspANI GGCC 6 cut(s) 5, 72, 111, 149, 307, 640
BspCNI CTCAG 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 2 cut(s) 8, 258
BspLI GGNNCC 5 cut(s) 170, 333, 349, 639, 807
BspMI ACCTGC 1 cut(s) 949
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 4 cut(s) 108, 303, 800, 813
BspT107I GGYRCC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 3 cut(s) 156, 291, 369
BssMI GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 3 cut(s) 158, 292, 475
Bst4CI ACNGT 2 cut(s) 145, 204
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 163, 173, 487
BstDEI CTNAG 2 cut(s) 21, 122
BstF5I GGATG 4 cut(s) 268, 418, 915, 985
BstFNI CGCG 2 cut(s) 8, 258
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 4 cut(s) 10, 67, 237, 258
BstKTI GATC 7 cut(s) 78, 116, 298, 361, 445, 568, 808
BstMBI GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 158, 181, 232, 934
BstNI CCWGG 3 cut(s) 158, 292, 475
BstSCI CCNGG 6 cut(s) 156, 271, 290, 368, 369, 473
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 2 cut(s) 8, 258
BstV1I GCAGC 2 cut(s) 732, 955
BstX2I RGATCY 2 cut(s) 295, 805
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 295, 805
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 568
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 6 cut(s) 5, 72, 111, 149, 307, 640
BsuTUI ATCGAT 1 cut(s) 568
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 4 cut(s) 268, 418, 915, 985
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 3 cut(s) 163, 173, 487
CfoI GCGC 4 cut(s) 10, 67, 237, 258
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 5 cut(s) 51, 99, 306, 348, 638
Cfr9I CCCGGG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 568
Csp6I GTAC 1 cut(s) 735
CviAII CATG 1 cut(s) 310
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 2 cut(s) 21, 122
DpnI GATC 7 cut(s) 77, 115, 297, 360, 444, 567, 807
DpnII GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
EaeI YGGCCR 3 cut(s) 3, 109, 147
EagI CGGCCG 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 937
EclXI CGGCCG 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 939
Eco47I GGWCC 3 cut(s) 51, 99, 348
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 937
Eco57I CTGAAG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 937
EcoO109I RGGNCCY 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 3 cut(s) 156, 290, 473
EcoT22I ATGCAT 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 1 cut(s) 313
FaiI YATR 9 cut(s) 200, 311, 573, 666, 726, 753, 842, 941, 1036
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FatI CATG 1 cut(s) 309
FauI CCCGC 2 cut(s) 45, 180
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 7 cut(s) 6, 150, 153, 185, 208, 721, 969
FokI GGATG 4 cut(s) 255, 425, 922, 992
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 7 cut(s) 6, 150, 153, 185, 208, 721, 969
FspBI CTAG 3 cut(s) 162, 176, 546
GlaI GCGC 4 cut(s) 9, 66, 236, 257
GluI GCNGC 7 cut(s) 6, 150, 153, 185, 208, 721, 969
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 6 cut(s) 5, 72, 111, 149, 307, 640
HapII CCGG 5 cut(s) 166, 229, 241, 272, 370
HhaI GCGC 4 cut(s) 10, 67, 237, 258
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 4 cut(s) 8, 65, 235, 256
HinP1I GCGC 4 cut(s) 8, 65, 235, 256
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 5 cut(s) 437, 577, 776, 947, 1031
HpaII CCGG 5 cut(s) 166, 229, 241, 272, 370
HphI GGTGA 2 cut(s) 415, 635
Hpy166II GTNNAC 1 cut(s) 511
Hpy188III TCNNGA 2 cut(s) 229, 362
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 622
HpyAV CCTTC 2 cut(s) 651, 1009
HpyCH4III ACNGT 2 cut(s) 145, 204
HpyCH4IV ACGT 3 cut(s) 95, 391, 513
HpyCH4V TGCA 2 cut(s) 720, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 181, 232, 934
HpyF3I CTNAG 2 cut(s) 21, 122
HpySE526I ACGT 3 cut(s) 95, 391, 513
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 4 cut(s) 8, 65, 235, 256
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
LmnI GCTCC 4 cut(s) 231, 337, 654, 728
Lsp1109I GCAGC 2 cut(s) 732, 955
LweI GCATC 2 cut(s) 277, 970
MaeI CTAG 3 cut(s) 162, 176, 546
MaeII ACGT 3 cut(s) 95, 391, 513
MaeIII GTNAC 1 cut(s) 948
MalI GATC 7 cut(s) 77, 115, 297, 360, 444, 567, 807
MbiI CCGCTC 1 cut(s) 104
MboI GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
MboII GAAGA 8 cut(s) 871, 880, 883, 886, 1012, 1015, 1018, 1021
MflI RGATCY 2 cut(s) 295, 805
MhlI GDGCHC 2 cut(s) 173, 939
MluCI AATT 6 cut(s) 383, 417, 541, 631, 647, 758
MlyI GAGTC 2 cut(s) 586, 956
MmeI TCCRAC 3 cut(s) 156, 375, 969
Mph1103I ATGCAT 1 cut(s) 985
MroI TCCGGA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 5 cut(s) 166, 229, 241, 272, 370
MspR9I CCNGG 6 cut(s) 158, 273, 292, 370, 371, 475
MvaI CCWGG 3 cut(s) 158, 292, 475
MvnI CGCG 2 cut(s) 8, 258
MwoI GCNNNNNNNGC 4 cut(s) 158, 181, 232, 934
NciI CCSGG 3 cut(s) 273, 370, 371
NdeII GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 5 cut(s) 170, 333, 349, 639, 807
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 948
NsiI ATGCAT 1 cut(s) 985
PceI AGGCCT 1 cut(s) 72
PfeI GAWTC 3 cut(s) 437, 776, 1031
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 7 cut(s) 7, 151, 154, 186, 209, 722, 970
PleI GAGTC 2 cut(s) 585, 955
PpsI GAGTC 2 cut(s) 585, 955
Ppu21I YACGTR 1 cut(s) 96
PsiI TTATAA 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 939
Psp1406I AACGTT 1 cut(s) 513
Psp6I CCWGG 3 cut(s) 156, 290, 473
PspGI CCWGG 3 cut(s) 156, 290, 473
PspN4I GGNNCC 5 cut(s) 170, 333, 349, 639, 807
PspPI GGNCC 5 cut(s) 51, 99, 306, 348, 638
PsuI RGATCY 2 cut(s) 295, 805
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
SacI GAGCTC 1 cut(s) 939
SatI GCNGC 7 cut(s) 6, 150, 153, 185, 208, 721, 969
Sau3AI GATC 7 cut(s) 75, 113, 295, 358, 442, 565, 805
Sau96I GGNCC 5 cut(s) 51, 99, 306, 348, 638
SchI GAGTC 2 cut(s) 586, 956
ScrFI CCNGG 6 cut(s) 158, 273, 292, 370, 371, 475
SduI GDGCHC 2 cut(s) 173, 939
SfaNI GCATC 2 cut(s) 277, 970
SinI GGWCC 3 cut(s) 51, 99, 348
SmaI CCCGGG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 6 cut(s) 383, 417, 541, 631, 647, 758
SseBI AGGCCT 1 cut(s) 72
SspMI CTAG 3 cut(s) 162, 176, 546
SstI GAGCTC 1 cut(s) 939
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 6 cut(s) 156, 271, 290, 368, 369, 473
TaaI ACNGT 2 cut(s) 145, 204
TaiI ACGT 3 cut(s) 98, 394, 516
TaqI TCGA 2 cut(s) 568, 580
TasI AATT 6 cut(s) 383, 417, 541, 631, 647, 758
TauI GCSGC 5 cut(s) 8, 152, 155, 187, 210
TfiI GAWTC 3 cut(s) 437, 776, 1031
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 948
TseI GCWGC 2 cut(s) 720, 968
Tsp45I GTSAC 1 cut(s) 948
TspDTI ATGAA 4 cut(s) 429, 816, 1023, 1028
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 3 cut(s) 51, 99, 348
XapI RAATTY 4 cut(s) 541, 631, 647, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 369
XspI CTAG 3 cut(s) 162, 176, 546
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.