Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

22907591 .. 22909819

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACCATTCTTTCGTCGGAGACCATGGACATTCCCGACGGGGTGAAGATCAAGGTCCACGCGAAGATCATCGAGGTGGAAGGCCCGCGCGGCAAGCTCGTCCGCAACTTCAAGCACCTCAACCTTGATTTCCAGCTCATCAAGGACGAGGAGACCGGCCAGCGCAAGCTCAAGATCGAGGCCTGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACCGCCCTCTCGCACGTCGAGAATCTCATCACCGGAGTCACCAAGGGGTACCGGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCCAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCTATCCTCCGATCTGAGAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGCAACCATCAATACCGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

9.52

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 90	1.7e-09	Ribosomal protein L6
Ribosomal_L6	PF00347	112 - 181	3.5e-11	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	3 cut(s)	65, 91, 93
AciI	CCGC	5 cut(s)	89, 93, 106, 213, 225
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	3 cut(s)	272, 278, 296
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	115, 464
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	100, 139, 172, 439
AluI	AGCT	4 cut(s)	100, 139, 172, 439
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	17, 149
AoxI	GGCC	3 cut(s)	85, 160, 183
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	93, 168, 212
AspS9I	GGNCC	3 cut(s)	58, 86, 222
AsuHPI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 439
AvaII	GGWCC	2 cut(s)	58, 222
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	487
BccI	CCATC	6 cut(s)	224, 317, 392, 443, 533, 575
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	17, 149
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	94, 213
BlsI	GCNGC	2 cut(s)	95, 214
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	2 cut(s)	58, 222
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	58, 86, 222
BmiI	GGNNCC	2 cut(s)	272, 334
BmrFI	CCNGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	17, 149
BsaJI	CCNNGG	3 cut(s)	27, 264, 576
BsaWI	WCCGGW	2 cut(s)	254, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	2 cut(s)	158, 273
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	27, 264, 576
BseGI	GGATG	2 cut(s)	439, 454
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	3 cut(s)	65, 91, 93
BshFI	GGCC	3 cut(s)	87, 162, 185
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	3 cut(s)	159, 255, 274
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	3 cut(s)	87, 162, 185
Bso31I	GGTCTC	2 cut(s)	17, 149
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	89, 93, 106, 213, 225
BspANI	GGCC	3 cut(s)	87, 162, 185
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	3 cut(s)	65, 91, 93
BspLI	GGNNCC	2 cut(s)	272, 334
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	17, 149
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	158, 273
BssAI	RCCGGY	2 cut(s)	158, 273
BssECI	CCNNGG	3 cut(s)	27, 264, 576
BssMI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2UI	CCWGG	1 cut(s)	187
BstC8I	GCNNGC	4 cut(s)	89, 98, 164, 170
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	439, 454
BstFNI	CGCG	3 cut(s)	65, 91, 93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	93, 168, 212
BstKTI	GATC	7 cut(s)	54, 72, 180, 324, 351, 419, 492
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	3 cut(s)	65, 91, 93
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	87, 162, 185
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	439, 454
Cac8I	GCNNGC	4 cut(s)	89, 98, 164, 170
CfoI	GCGC	3 cut(s)	93, 168, 212
Cfr10I	RCCGGY	2 cut(s)	158, 273
Cfr13I	GGNCC	3 cut(s)	58, 86, 222
Csp6I	GTAC	3 cut(s)	271, 277, 295
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	2 cut(s)	28, 506
CviJI	RGCY	8 cut(s)	87, 100, 139, 162, 172, 185, 335, 439
CviKI_1	RGCY	8 cut(s)	87, 100, 139, 162, 172, 185, 335, 439
CviQI	GTAC	3 cut(s)	271, 277, 295
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	7 cut(s)	53, 71, 179, 323, 350, 418, 491
DpnII	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	2 cut(s)	17, 149
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	58, 222
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	2 cut(s)	31, 509
FaiI	YATR	4 cut(s)	29, 392, 507, 549
FatI	CATG	2 cut(s)	27, 505
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	94, 213
FokI	GGATG	2 cut(s)	446, 461
Fsp4HI	GCNGC	2 cut(s)	94, 213
GlaI	GCGC	3 cut(s)	92, 167, 211
GluI	GCNGC	2 cut(s)	94, 213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	87, 162, 185
HapII	CCGG	3 cut(s)	159, 255, 274
HhaI	GCGC	3 cut(s)	93, 168, 212
Hin1II	CATG	2 cut(s)	31, 509
Hin6I	GCGC	3 cut(s)	91, 166, 210
HinP1I	GCGC	3 cut(s)	91, 166, 210
HinfI	GANTC	2 cut(s)	244, 258
HpaII	CCGG	3 cut(s)	159, 255, 274
HphI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 439
Hpy166II	GTNNAC	2 cut(s)	61, 295
Hpy188I	TCNGA	4 cut(s)	22, 416, 421, 489
Hpy188III	TCNNGA	8 cut(s)	38, 175, 220, 241, 352, 511, 526, 536
Hpy8I	GTNNAC	2 cut(s)	61, 295
Hpy99I	CGWCG	3 cut(s)	22, 44, 242
HpyAV	CCTTC	4 cut(s)	77, 367, 418, 424
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	31, 509
HspAI	GCGC	3 cut(s)	91, 166, 210
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
LmnI	GCTCC	1 cut(s)	332
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	7 cut(s)	53, 71, 179, 323, 350, 418, 491
MboI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
MboII	GAAGA	4 cut(s)	16, 61, 79, 382
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	70, 131, 145, 175, 239, 279, 422, 552, 571
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	159, 255, 274
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	3 cut(s)	65, 91, 93
MwoI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
NlaIII	CATG	2 cut(s)	31, 509
NlaIV	GGNNCC	2 cut(s)	272, 334
NmuCI	GTSAC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	95, 214
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	272, 334
PspPI	GGNCC	3 cut(s)	58, 86, 222
RsaI	GTAC	3 cut(s)	272, 278, 296
RsaNI	GTAC	3 cut(s)	271, 277, 295
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	94, 213
Sau3AI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
Sau96I	GGNCC	3 cut(s)	58, 86, 222
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	487
SinI	GGWCC	2 cut(s)	58, 222
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	89, 93, 106, 213, 225
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	27, 264
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	75, 180, 240, 320, 341
TaqII	GACCGA	1 cut(s)	465
TauI	GCSGC	2 cut(s)	96, 215
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	58, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.