Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

180297 .. 183659

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggaatctggacatcagctggctcgcctcctcaccctggtcacgtctgtggtggtgttttgcagcaatttggccggaagagctcgattgggagctgtgaaggttactgtagcaaatcgggatttcagtcgatttcaggcgattccggccgtctccggccaccaaaccggcgtcgaaggtggtgctgccaaaatttggtggccattggtggtggttgccggtggcgcgcgtggcccacgcgccgccactgtggatggcgtatgctctctctcctcccccaccaccaccatcacaaccctcattcctcccctaacttatgccctcgcttctctccttatcccacaccccaatgcccccccgccgtgctggacctacaacgaggccgaaaccctcatctccatcttcaaggaccagtggtcctctctcgaccgcaccaatctcaaagccaccaactgggatgacgtcgccaccaccctcgccgcccaattcccactagtctcgccactcaagacagccatgcagtgccacaacaagatcaataagctccggagagaagtggagatgggtttaaaggtcgaacaagaacatccttgggatgagatcggagaagaagattaccgccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

208

Amino Acids

22.68

Weight (kDa)

7.01

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccB7I	CCANNNNNTGG	2 cut(s)	195, 453
AccII	CGCG	3 cut(s)	227, 229, 240
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	5 cut(s)	243, 359, 430, 480, 619
AcoI	YGGCCR	4 cut(s)	72, 147, 157, 200
AcsI	RAATTY	1 cut(s)	192
AcyI	GRCGYC	2 cut(s)	171, 462
AfiI	CCNNNNNNNGG	3 cut(s)	37, 195, 453
AgsI	TTSAA	1 cut(s)	406
AhdI	GACNNNNNGTC	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	493
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	19, 83, 95, 544
AluI	AGCT	4 cut(s)	19, 83, 95, 544
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	157, 502
Aor13HI	TCCGGA	1 cut(s)	546
AoxI	GGCC	6 cut(s)	72, 147, 157, 200, 232, 381
ApeKI	GCWGC	2 cut(s)	63, 185
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	3 cut(s)	227, 229, 242
AspS9I	GGNCC	4 cut(s)	233, 369, 409, 417
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	3 cut(s)	369, 409, 417
BalI	TGGCCA	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	75, 172
BccI	CCATC	4 cut(s)	248, 296, 407, 556
BceAI	ACGGC	2 cut(s)	134, 346
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	157, 502
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	4 cut(s)	64, 186, 243, 480
BlsI	GCNGC	4 cut(s)	65, 187, 244, 481
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	3 cut(s)	369, 409, 417
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	4 cut(s)	233, 369, 409, 417
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	491
BsaHI	GRCGYC	2 cut(s)	171, 462
BsaJI	CCNNGG	2 cut(s)	36, 590
BsaWI	WCCGGW	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 195, 453
Bse118I	RCCGGY	2 cut(s)	167, 218
Bse1I	ACTGG	2 cut(s)	412, 458
BseAI	TCCGGA	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	36, 590
BseGI	GGATG	4 cut(s)	259, 463, 586, 601
BseLI	CCNNNNNNNGG	3 cut(s)	37, 195, 453
BseNI	ACTGG	2 cut(s)	412, 458
BsePI	GCGCGC	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	20, 262
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	75, 172
Bsh1236I	CGCG	3 cut(s)	227, 229, 240
Bsh1285I	CGRYCG	2 cut(s)	150, 430
BshFI	GGCC	6 cut(s)	74, 149, 159, 202, 234, 383
BsiEI	CGRYCG	2 cut(s)	150, 430
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	6 cut(s)	75, 146, 156, 168, 219, 547
BslI	CCNNNNNNNGG	3 cut(s)	37, 195, 453
BsmAI	GTCTC	2 cut(s)	157, 502
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	6 cut(s)	74, 149, 159, 202, 234, 383
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	534, 600
BspACI	CCGC	5 cut(s)	243, 359, 430, 480, 619
BspANI	GGCC	6 cut(s)	74, 149, 159, 202, 234, 383
BspEI	TCCGGA	1 cut(s)	546
BspFNI	CGCG	3 cut(s)	227, 229, 240
BspQI	GCTCTTC	1 cut(s)	73
BsrFI	RCCGGY	2 cut(s)	167, 218
BsrI	ACTGG	2 cut(s)	412, 458
BssAI	RCCGGY	2 cut(s)	167, 218
BssECI	CCNNGG	2 cut(s)	36, 590
BssHII	GCGCGC	1 cut(s)	225
BssMI	GATC	2 cut(s)	534, 600
BssNI	GRCGYC	2 cut(s)	171, 462
BssT1I	CCWWGG	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	109, 250
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	2 cut(s)	171, 462
BstC8I	GCNNGC	3 cut(s)	21, 25, 227
BstF5I	GGATG	4 cut(s)	259, 463, 586, 601
BstFNI	CGCG	3 cut(s)	227, 229, 240
BstHHI	GCGC	3 cut(s)	227, 229, 242
BstKTI	GATC	2 cut(s)	537, 603
BstMAI	GTCTC	2 cut(s)	157, 502
BstMBI	GATC	2 cut(s)	534, 600
BstMCI	CGRYCG	2 cut(s)	150, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 146, 224, 231
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	3 cut(s)	227, 229, 240
BstV1I	GCAGC	2 cut(s)	75, 172
BstZI	CGGCCG	1 cut(s)	147
BsuRI	GGCC	6 cut(s)	74, 149, 159, 202, 234, 383
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	259, 463, 586, 601
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	3 cut(s)	246, 419, 527
Cac8I	GCNNGC	3 cut(s)	21, 25, 227
CfoI	GCGC	3 cut(s)	227, 229, 242
Cfr10I	RCCGGY	2 cut(s)	167, 218
Cfr13I	GGNCC	4 cut(s)	233, 369, 409, 417
CseI	GACGC	1 cut(s)	160
CviAII	CATG	1 cut(s)	517
DpnI	GATC	2 cut(s)	536, 602
DpnII	GATC	2 cut(s)	534, 600
DraI	TTTAAA	1 cut(s)	570
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	4 cut(s)	72, 147, 157, 200
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	369, 409, 417
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	590
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	520
FaiI	YATR	3 cut(s)	262, 318, 518
FatI	CATG	1 cut(s)	516
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	64, 186, 243, 480
FokI	GGATG	4 cut(s)	266, 470, 573, 608
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	4 cut(s)	64, 186, 243, 480
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	3 cut(s)	226, 228, 241
GluI	GCNGC	4 cut(s)	64, 186, 243, 480
HaeIII	GGCC	6 cut(s)	74, 149, 159, 202, 234, 383
HapII	CCGG	6 cut(s)	75, 146, 156, 168, 219, 547
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	227, 229, 242
Hin1I	GRCGYC	2 cut(s)	171, 462
Hin1II	CATG	1 cut(s)	520
Hin6I	GCGC	3 cut(s)	225, 227, 240
HinP1I	GCGC	3 cut(s)	225, 227, 240
HinfI	GANTC	2 cut(s)	5, 142
HpaII	CCGG	6 cut(s)	75, 146, 156, 168, 219, 547
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	605
Hpy188III	TCNNGA	5 cut(s)	9, 119, 425, 508, 547
Hpy99I	CGWCG	2 cut(s)	176, 467
HpyAV	CCTTC	2 cut(s)	94, 170
HpyCH4III	ACNGT	2 cut(s)	109, 250
HpyCH4IV	ACGT	2 cut(s)	44, 462
HpyCH4V	TGCA	2 cut(s)	63, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 146, 224, 231
HpySE526I	ACGT	2 cut(s)	44, 462
Hsp92I	GRCGYC	2 cut(s)	171, 462
Hsp92II	CATG	1 cut(s)	520
HspAI	GCGC	3 cut(s)	225, 227, 240
Kpn2I	TCCGGA	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	534, 600
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	92, 549
Lsp1109I	GCAGC	2 cut(s)	75, 172
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	2 cut(s)	44, 462
MaeIII	GTNAC	2 cut(s)	40, 103
MalI	GATC	2 cut(s)	536, 602
MboI	GATC	2 cut(s)	534, 600
MboII	GAAGA	4 cut(s)	90, 394, 620, 623
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	202
MluCI	AATT	3 cut(s)	67, 192, 485
MluNI	TGGCCA	1 cut(s)	202
Mox20I	TGGCCA	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	202
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	2 cut(s)	47, 348
Msp20I	TGGCCA	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	6 cut(s)	75, 146, 156, 168, 219, 547
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	3 cut(s)	227, 229, 240
MwoI	GCNNNNNNNGC	4 cut(s)	80, 146, 224, 231
NdeII	GATC	2 cut(s)	534, 600
NlaIII	CATG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	47
PauI	GCGCGC	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	5, 142
PflMI	CCANNNNNTGG	2 cut(s)	195, 453
PkrI	GCNGC	4 cut(s)	65, 187, 244, 481
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	4 cut(s)	233, 369, 409, 417
PteI	GCGCGC	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	47, 348
SacI	GAGCTC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	4 cut(s)	64, 186, 243, 480
Sau3AI	GATC	2 cut(s)	534, 600
Sau96I	GGNCC	4 cut(s)	233, 369, 409, 417
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	3 cut(s)	369, 409, 417
SmiMI	CAYNNNNRTG	2 cut(s)	47, 348
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	493
Sse9I	AATT	3 cut(s)	67, 192, 485
SsiI	CCGC	5 cut(s)	243, 359, 430, 480, 619
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	109, 250
TaiI	ACGT	2 cut(s)	47, 465
TaqI	TCGA	5 cut(s)	85, 130, 174, 426, 576
TasI	AATT	3 cut(s)	67, 192, 485
TauI	GCSGC	2 cut(s)	245, 482
TfiI	GAWTC	2 cut(s)	5, 142
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	3 cut(s)	253, 419, 527
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	63, 185
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	3 cut(s)	253, 419, 527
Van91I	CCANNNNNTGG	2 cut(s)	195, 453
VpaK11BI	GGWCC	3 cut(s)	369, 409, 417
XapI	RAATTY	1 cut(s)	192
XspI	CTAG	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.