Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

47292801 .. 47297163

Gene Structure 4363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCTCCTTTATCTTCAAGGACCACGTCGCCGCCGCCAAGGCTTCCGTGGCTCCATCCTTGCCTCCCAAGACCGCGTTGCGGTGCGGTCATAAGATGAAGAAGCTCCGCAAGCGTACCGTGCCGAGAAGCGGTGGACTTCTAGGTACCGGGTTGCCATTTTTCAACCGAAGGGCTCTGAATTTGGGGCTTGTGCTACCACCTATCAAATTTGTTGCCCTCGTTACAAAAGGGGATTTTATCTCGACATGCAGACTGATTTTCCATGCGGAGTTCAGTCACTGTGATTTCAATTCGATCAGTATAGATCTGTCAAGGAGAAGATTGAAAGATGGAGATGAAAAAATTGTTGTATGTAACGGTTATAACCACTACAATTGTGGTAGATGTGTGAACTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

10.11

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	77
AciI	CCGC	8 cut(s)	33, 36, 75, 82, 87, 109, 132, 269
AcsI	RAATTY	2 cut(s)	181, 209
AfaI	GTAC	2 cut(s)	118, 148
AfiI	CCNNNNNNNGG	2 cut(s)	81, 131
AgsI	TTSAA	4 cut(s)	19, 166, 292, 328
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	181, 209
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	178
BccI	CCATC	2 cut(s)	64, 326
BcnI	CCSGG	1 cut(s)	151
BfaI	CTAG	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	54, 148
BmrFI	CCNGG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	39, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 131
BseDI	CCNNGG	2 cut(s)	39, 48
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	81, 131
Bsh1236I	CGCG	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	81, 131
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	297, 307
BspACI	CCGC	8 cut(s)	33, 36, 75, 82, 87, 109, 132, 269
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	54, 148
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	39, 48
BssMI	GATC	2 cut(s)	297, 307
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	121, 284, 362
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	300, 310
BstMBI	GATC	2 cut(s)	297, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 50, 112, 121
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	117, 147
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	2 cut(s)	249, 266
CviJI	RGCY	5 cut(s)	44, 53, 106, 176, 190
CviKI_1	RGCY	5 cut(s)	44, 53, 106, 176, 190
CviQI	GTAC	2 cut(s)	117, 147
DpnI	GATC	2 cut(s)	299, 309
DpnII	GATC	2 cut(s)	297, 307
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	252, 269
FaiI	YATR	6 cut(s)	93, 250, 267, 305, 355, 366
FatI	CATG	2 cut(s)	248, 265
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	33, 36
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	2 cut(s)	252, 269
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	137, 394
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	137, 394
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	121, 284, 362
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 50, 112, 121
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	252, 269
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	297, 307
LmnI	GCTCC	2 cut(s)	58, 111
LpnPI	CCDG	1 cut(s)	163
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	223, 278, 356
MalI	GATC	2 cut(s)	299, 309
MboI	GATC	2 cut(s)	297, 307
MboII	GAAGA	3 cut(s)	7, 112, 333
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	5 cut(s)	181, 209, 292, 345, 376
MnlI	CCTC	2 cut(s)	75, 230
MseI	TTAA	1 cut(s)	403
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	41, 50, 112, 121
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	297, 307
NlaIII	CATG	2 cut(s)	252, 269
NlaIV	GGNNCC	2 cut(s)	54, 148
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	34, 37
PsiI	TTATAA	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	54, 148
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	118, 148
RsaNI	GTAC	2 cut(s)	117, 147
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	2 cut(s)	297, 307
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	30, 108, 148, 205
SinI	GGWCC	1 cut(s)	22
Sse9I	AATT	5 cut(s)	181, 209, 292, 345, 376
SsiI	CCGC	8 cut(s)	33, 36, 75, 82, 87, 109, 132, 269
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	121, 284, 362
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	245, 296
TasI	AATT	5 cut(s)	181, 209, 292, 345, 376
TauI	GCSGC	2 cut(s)	35, 38
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	113, 354
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	287
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	181, 209
XceI	RCATGY	1 cut(s)	252
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 377
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.