Rh7CG236600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001209
Physical Location & Seq
Reverse (-)
22150386 .. 22154110
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG236600.1

Sequence Viewer

Length: 576 bp
ATGGAGAAGCTCCGCAAGCGGTACCGCGCTGAGAAGCAGCGGGCTTCTGGGTACCCGGGTCGGTTTTCCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGGCCCGGATCCGGGATTCGATAGTGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTAATGGAAATGTTGGTAGGGATTTTAGTCCTGATGTTGATGAAAATTCTAGCTTTTATTCTGAAGGTGATGATTATGTTAATCAAGGGTTTAGGCCAAAGAGTAATGGCAAGACTGATGTGAATCTTAAGCACAGTTTCAGGCAACATGGGGACTATGGAGTTGATATTAGAAGTGATAGGGATTTTGTACCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGCAAAGCGCAATGTGCGTTTTAAGGAGTTTGATGGGACTTGCCTGATGGCACAGGACCCTTATAATCCTGGTCGCCCTATGCTCAATCAAATGGTCTGGGCTGGACAGAATGTAACATCAGACTCAGAAGCTATTGCTAACATTTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

6.84

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 388
Acc65I GGTACC 2 cut(s) 21, 51
AccB1I GGYRCC 2 cut(s) 21, 51
AccII CGCG 1 cut(s) 27
AciI CCGC 4 cut(s) 13, 19, 25, 40
AclWI GGATC 2 cut(s) 113, 126
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 2 cut(s) 185, 232
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 23, 53, 378
AfiI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
AflII CTTAAG 1 cut(s) 314
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 3 cut(s) 10, 240, 554
AluI AGCT 3 cut(s) 10, 240, 554
AlwI GGATC 2 cut(s) 113, 126
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 3 cut(s) 112, 281, 392
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 185, 232
Asp718I GGTACC 2 cut(s) 21, 51
AspLEI GCGC 2 cut(s) 29, 432
AspS9I GGNCC 2 cut(s) 113, 478
AsuC2I CCSGG 4 cut(s) 56, 57, 116, 123
AsuHPI GGTGA 3 cut(s) 152, 193, 266
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 478
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 2 cut(s) 21, 51
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 410, 449, 463
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 4 cut(s) 56, 57, 116, 123
BfaI CTAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 5 cut(s) 56, 57, 116, 123, 492
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 113, 478
BmiI GGNNCC 4 cut(s) 23, 53, 120, 480
BmrFI CCNGG 5 cut(s) 56, 57, 116, 123, 492
BpuMI CCSGG 4 cut(s) 56, 57, 116, 123
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
Bse118I RCCGGY 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 21, 561
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 114, 283, 394
BshNI GGYRCC 2 cut(s) 21, 51
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 5 cut(s) 56, 111, 116, 122, 384
BslFI GGGAC 2 cut(s) 353, 472
BslI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
BsmFI GGGAC 2 cut(s) 353, 472
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 3 cut(s) 114, 283, 394
BsoBI CYCGRG 1 cut(s) 55
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 4 cut(s) 13, 19, 25, 40
BspANI GGCC 3 cut(s) 114, 283, 394
BspCNI CTCAG 2 cut(s) 22, 560
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 4 cut(s) 23, 53, 120, 480
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 2 cut(s) 113, 126
BspT107I GGYRCC 2 cut(s) 21, 51
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 17, 42
BstDEI CTNAG 2 cut(s) 30, 547
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 2 cut(s) 29, 432
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 16, 436
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 5 cut(s) 54, 55, 114, 121, 490
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 114, 283, 394
BtsCI GGATG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 17, 42
CfoI GCGC 2 cut(s) 29, 432
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 2 cut(s) 113, 478
Cfr9I CCCGGG 1 cut(s) 55
Csp6I GTAC 3 cut(s) 22, 52, 377
CviAII CATG 3 cut(s) 94, 335, 573
CviQI GTAC 3 cut(s) 22, 52, 377
DdeI CTNAG 2 cut(s) 30, 547
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 3 cut(s) 97, 338, 576
FaiI YATR 7 cut(s) 95, 264, 336, 345, 486, 503, 574
FaqI GGGAC 2 cut(s) 353, 472
FatI CATG 3 cut(s) 93, 334, 572
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 28, 431
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 3 cut(s) 114, 283, 394
HapII CCGG 5 cut(s) 56, 111, 116, 122, 384
HhaI GCGC 2 cut(s) 29, 432
Hin1II CATG 3 cut(s) 97, 338, 576
Hin6I GCGC 2 cut(s) 27, 430
HinP1I GCGC 2 cut(s) 27, 430
HinfI GANTC 4 cut(s) 107, 126, 310, 545
HpaII CCGG 5 cut(s) 56, 111, 116, 122, 384
HphI GGTGA 3 cut(s) 152, 193, 266
Hpy188I TCNGA 3 cut(s) 250, 544, 550
Hpy188III TCNNGA 1 cut(s) 218
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 425, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 436
HpyF3I CTNAG 2 cut(s) 30, 547
Hsp92II CATG 3 cut(s) 97, 338, 576
HspAI GCGC 2 cut(s) 27, 430
KpnI GGTACC 2 cut(s) 25, 55
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 535
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 175, 185, 232
MlyI GAGTC 2 cut(s) 116, 539
MnlI CCTC 2 cut(s) 79, 143
MseI TTAA 5 cut(s) 164, 189, 267, 315, 444
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 5 cut(s) 56, 111, 116, 122, 384
MspR9I CCNGG 5 cut(s) 56, 57, 116, 123, 492
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 16, 436
NciI CCSGG 4 cut(s) 56, 57, 116, 123
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 97, 338, 576
NlaIV GGNNCC 4 cut(s) 23, 53, 120, 480
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 2 cut(s) 126, 310
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 115, 539
PpsI GAGTC 2 cut(s) 115, 539
PpuMI RGGWCCY 1 cut(s) 478
PsiI TTATAA 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 4 cut(s) 23, 53, 120, 480
PspPI GGNCC 2 cut(s) 113, 478
PspPPI RGGWCCY 1 cut(s) 478
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 3 cut(s) 23, 53, 378
RsaNI GTAC 3 cut(s) 22, 52, 377
SaqAI TTAA 5 cut(s) 164, 189, 267, 315, 444
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 113, 478
SchI GAGTC 2 cut(s) 116, 539
ScrFI CCNGG 5 cut(s) 56, 57, 116, 123, 492
SetI ASST 6 cut(s) 12, 154, 242, 256, 382, 556
SinI GGWCC 1 cut(s) 478
SmaI CCCGGG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 175, 185, 232
SsiI CCGC 4 cut(s) 13, 19, 25, 40
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 5 cut(s) 54, 55, 114, 121, 490
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 129
TasI AATT 3 cut(s) 175, 185, 232
TfiI GAWTC 2 cut(s) 126, 310
Tru1I TTAA 5 cut(s) 164, 189, 267, 315, 444
Tru9I TTAA 5 cut(s) 164, 189, 267, 315, 444
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 77, 114, 243
TspMI CCCGGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 2 cut(s) 185, 232
XmaI CCCGGG 1 cut(s) 55
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.