Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

56234149 .. 56235728

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGAAGCTCAGCAAGCGGTACTGTGCTGAGAAGCAGCGGGCTTCTAGGTACCCGGGTCGGTCTTCCTCCTTGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCAACCCGGATCGGGGATTGGATAATGGTGGTGAGTTTGGAGCTTCCACCACCAGGTTCAACCACACCGACAGCAACCAGATCAACTGGAGATGCCACCACCTCGCCGCCAACAACCACGTCGTTGAAAAGAAAGAAAAGACCAACAGCCGCGGGTCTGGACACCCATACCCCACCGCCTCTAGTAGAGGGATAGGACTGAGGTCAATCACCGCCACCACCCATCACAGCAACAATAGGGAGAAGCGATCCACACGCCGACCAAATCACCATACCGCCGCCATACCACGCACTACCAGCCTCGACTGCGATATCACCATCACTGTCTCCAGCCAAACACCCAGCACAACTCTGCGAATGAAGCCTCATAGCCATGTTGGAAAGAGACCAATCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

170

Amino Acids

19.11

Weight (kDa)

10.32

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	264
AciI	CCGC	9 cut(s)	19, 40, 219, 262, 264, 288, 324, 387, 390
AclWI	GGATC	2 cut(s)	129, 354
AfaI	GTAC	2 cut(s)	23, 53
AfiI	CCNNNNNNNGG	4 cut(s)	78, 124, 125, 165
AgsI	TTSAA	2 cut(s)	172, 239
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	10, 155
AluI	AGCT	2 cut(s)	10, 155
Alw26I	GTCTC	2 cut(s)	442, 490
AlwI	GGATC	2 cut(s)	129, 354
Ama87I	CYCGRG	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	51
AsuC2I	CCSGG	3 cut(s)	56, 57, 119
AsuHPI	GGTGA	4 cut(s)	155, 313, 371, 418
AvaI	CYCGRG	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BanI	GGYRCC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	342, 437
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	56, 57, 119
BcoDI	GTCTC	2 cut(s)	442, 490
BfaI	CTAG	2 cut(s)	48, 294
BisI	GCNGC	4 cut(s)	38, 219, 262, 390
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	4 cut(s)	39, 220, 263, 391
Bme1390I	CCNGG	4 cut(s)	56, 57, 119, 166
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	4 cut(s)	56, 57, 119, 166
BmsI	GCATC	1 cut(s)	194
BoxI	GACNNNNGTC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	220, 424
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuMI	CCSGG	3 cut(s)	56, 57, 119
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	55, 262
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 124, 125, 165
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	55, 262
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	4 cut(s)	78, 124, 125, 165
BseMII	CTCAG	3 cut(s)	21, 25, 302
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	56, 119
BslI	CCNNNNNNNGG	4 cut(s)	78, 124, 125, 165
BsmAI	GTCTC	2 cut(s)	442, 490
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	121, 192, 359
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	9 cut(s)	19, 40, 219, 262, 264, 288, 324, 387, 390
BspCNI	CTCAG	3 cut(s)	22, 24, 303
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	129, 354
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	55, 262
BssMI	GATC	3 cut(s)	121, 192, 359
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	26, 436
BstC8I	GCNNGC	2 cut(s)	17, 42
BstDEI	CTNAG	3 cut(s)	11, 30, 311
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	3 cut(s)	124, 195, 362
BstMAI	GTCTC	2 cut(s)	442, 490
BstMBI	GATC	3 cut(s)	121, 192, 359
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 408, 417, 472
BstNI	CCWGG	1 cut(s)	166
BstPAI	GACNNNNGTC	1 cut(s)	313
BstSCI	CCNGG	4 cut(s)	54, 55, 117, 164
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	17, 42
Cfr42I	CCGCGG	1 cut(s)	265
Cfr9I	CCCGGG	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	22, 52
CviAII	CATG	2 cut(s)	97, 485
CviJI	RGCY	9 cut(s)	10, 44, 83, 155, 261, 411, 444, 475, 483
CviKI_1	RGCY	9 cut(s)	10, 44, 83, 155, 261, 411, 444, 475, 483
CviQI	GTAC	2 cut(s)	22, 52
DdeI	CTNAG	3 cut(s)	11, 30, 311
DpnI	GATC	3 cut(s)	123, 194, 361
DpnII	GATC	3 cut(s)	121, 192, 359
Eco31I	GGTCTC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	2 cut(s)	100, 488
FaiI	YATR	6 cut(s)	98, 280, 384, 395, 480, 486
FatI	CATG	2 cut(s)	96, 484
FauI	CCCGC	2 cut(s)	33, 257
Fnu4HI	GCNGC	4 cut(s)	38, 219, 262, 390
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	4 cut(s)	38, 219, 262, 390
FspBI	CTAG	2 cut(s)	48, 294
GluI	GCNGC	4 cut(s)	38, 219, 262, 390
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	220, 424
HapII	CCGG	2 cut(s)	56, 119
Hin1II	CATG	2 cut(s)	100, 488
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	56, 119
HphI	GGTGA	4 cut(s)	155, 313, 371, 418
Hpy188III	TCNNGA	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	26, 436
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 408, 417, 472
HpyF3I	CTNAG	3 cut(s)	11, 30, 311
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	100, 488
KpnI	GGTACC	1 cut(s)	55
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	121, 192, 359
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	194
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	2 cut(s)	48, 294
MaeII	ACGT	1 cut(s)	231
MalI	GATC	3 cut(s)	123, 194, 361
MboI	GATC	3 cut(s)	121, 192, 359
MboII	GAAGA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	138, 469
MnlI	CCTC	7 cut(s)	79, 224, 293, 301, 306, 422, 486
MslI	CAYNNNNRTG	1 cut(s)	483
MspA1I	CMGCKG	2 cut(s)	40, 264
MspI	CCGG	2 cut(s)	56, 119
MspR9I	CCNGG	4 cut(s)	56, 57, 119, 166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	16, 408, 417, 472
NciI	CCSGG	3 cut(s)	56, 57, 119
NdeII	GATC	3 cut(s)	121, 192, 359
NlaIII	CATG	2 cut(s)	100, 488
NlaIV	GGNNCC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	39, 220, 263, 391
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	23, 53
RsaNI	GTAC	2 cut(s)	22, 52
RseI	CAYNNNNRTG	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	265
SatI	GCNGC	4 cut(s)	38, 219, 262, 390
Sau3AI	GATC	3 cut(s)	121, 192, 359
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	56, 57, 119, 166
SetI	ASST	8 cut(s)	12, 53, 157, 170, 216, 234, 317, 510
SexAI	ACCWGGT	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SmaI	CCCGGG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	483
SsiI	CCGC	9 cut(s)	19, 40, 219, 262, 264, 288, 324, 387, 390
SspMI	CTAG	2 cut(s)	48, 294
StyD4I	CCNGG	4 cut(s)	54, 55, 117, 164
TaaI	ACNGT	2 cut(s)	26, 436
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	414
TaqII	GACCGA	1 cut(s)	51
TauI	GCSGC	3 cut(s)	221, 264, 392
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	80, 117, 485
TspMI	CCCGGG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	439
XmaI	CCCGGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	48, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.