Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

45972575 .. 45978921

Gene Structure 6347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCAACGACCACCCACCACCACCATCACAACCCTCATTCTTCTCCTAACCTACGCCTCCCTTCCCTTCTTTTTCTTCTCCTAACCTACACCCCCCAATGTCCTCACCCACCCCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCGTCTCGCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTACCGGTTTATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATGTGGTGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTATCTTCGAAAATTCGGAGGAGTGGAGTCTAGTGGTGTTGGTGTTAACGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCGGTTGAAGAGATGGTTTCGTCGATTCAGTTGCTTGGGGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAGATGAAGCAGACTCAGGTGATTATGGAGTCACAGCAACAGATAGTGAATGCTTGTGTGAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATCAAGGCGGTGTCGACTGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

316

Amino Acids

35.44

Weight (kDa)

9.67

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	47 - 137	2.2e-15	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	330, 568
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	938
AccII	CGCG	1 cut(s)	293
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	460, 494, 629
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	3 cut(s)	332, 392, 507
AfiI	CCNNNNNNNGG	2 cut(s)	228, 400
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	181, 598, 722
AhdI	GACNNNNNGTC	1 cut(s)	190
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	319, 482, 612
AluI	AGCT	3 cut(s)	319, 482, 612
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	5 cut(s)	156, 202, 351, 433, 441
ApeKI	GCWGC	1 cut(s)	346
ApoI	RAATTY	3 cut(s)	460, 494, 629
AsiGI	ACCGGT	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	6 cut(s)	144, 157, 192, 351, 433, 442
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	4 cut(s)	98, 464, 536, 856
AsuII	TTCGAA	1 cut(s)	625
AvaII	GGWCC	2 cut(s)	144, 192
BanI	GGYRCC	2 cut(s)	330, 568
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	4 cut(s)	33, 721, 778, 784
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	727, 761
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	4 cut(s)	471, 648, 795, 949
BisI	GCNGC	8 cut(s)	121, 124, 134, 205, 243, 255, 291, 347
BlsI	GCNGC	8 cut(s)	122, 125, 135, 206, 244, 256, 292, 348
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	144, 192
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	6 cut(s)	144, 157, 192, 351, 433, 442
BmiI	GGNNCC	2 cut(s)	332, 570
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	517, 801
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	613
Bpu14I	TTCGAA	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	199, 380
BsaWI	WCCGGW	2 cut(s)	393, 715
BsaXI	ACNNNNNCTCC	6 cut(s)	404, 434, 502, 532, 670, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 400
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	199, 380
BseGI	GGATG	2 cut(s)	238, 496
BseLI	CCNNNNNNNGG	2 cut(s)	228, 400
BseMII	CTCAG	2 cut(s)	627, 854
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	651, 709
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	2 cut(s)	205, 370
BshFI	GGCC	5 cut(s)	158, 204, 353, 435, 443
BshNI	GGYRCC	2 cut(s)	330, 568
BshTI	ACCGGT	1 cut(s)	393
BsiEI	CGRYCG	2 cut(s)	205, 370
BsiSI	CCGG	3 cut(s)	366, 394, 716
BslI	CCNNNNNNNGG	2 cut(s)	228, 400
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	5 cut(s)	158, 204, 353, 435, 443
Bsp119I	TTCGAA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	309, 712, 924
BspANI	GGCC	5 cut(s)	158, 204, 353, 435, 443
BspCNI	CTCAG	2 cut(s)	626, 853
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	332, 570
BspPI	GGATC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	625
BspT107I	GGYRCC	2 cut(s)	330, 568
BsrBI	CCGCTC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	199, 380
BssMI	GATC	3 cut(s)	309, 712, 924
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	3 cut(s)	717, 770, 911
BstACI	GRCGYC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	585, 613, 840
BstF5I	GGATG	2 cut(s)	238, 496
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	312, 715, 927
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	309, 712, 924
BstMCI	CGRYCG	2 cut(s)	205, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	169
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	5 cut(s)	158, 204, 353, 435, 443
BtsCI	GGATG	2 cut(s)	238, 496
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	6 cut(s)	144, 157, 192, 351, 433, 442
Csp6I	GTAC	3 cut(s)	331, 391, 506
CspAI	ACCGGT	1 cut(s)	393
CviAII	CATG	1 cut(s)	823
CviQI	GTAC	3 cut(s)	331, 391, 506
DdeI	CTNAG	3 cut(s)	585, 613, 840
DpnI	GATC	3 cut(s)	311, 714, 926
DpnII	GATC	3 cut(s)	309, 712, 924
DriI	GACNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	717, 770, 911
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	3 cut(s)	717, 770, 911
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	144, 192
Eco52I	CGGCCG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	826
FaiI	YATR	6 cut(s)	401, 558, 762, 764, 824, 851
FatI	CATG	1 cut(s)	822
FauI	CCCGC	3 cut(s)	125, 138, 342
FblI	GTMKAC	1 cut(s)	938
Fnu4HI	GCNGC	8 cut(s)	121, 124, 134, 205, 243, 255, 291, 347
FokI	GGATG	2 cut(s)	245, 503
Fsp4HI	GCNGC	8 cut(s)	121, 124, 134, 205, 243, 255, 291, 347
FspBI	CTAG	4 cut(s)	471, 648, 795, 949
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	8 cut(s)	121, 124, 134, 205, 243, 255, 291, 347
HaeIII	GGCC	5 cut(s)	158, 204, 353, 435, 443
HapII	CCGG	3 cut(s)	366, 394, 716
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	826
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	3 cut(s)	6, 664, 939
HindII	GTYRAC	3 cut(s)	6, 664, 939
HinfI	GANTC	6 cut(s)	419, 644, 739, 838, 854, 944
HpaI	GTTAAC	1 cut(s)	664
HpaII	CCGG	3 cut(s)	366, 394, 716
HphI	GGTGA	4 cut(s)	98, 464, 536, 856
Hpy166II	GTNNAC	3 cut(s)	6, 664, 939
Hpy188I	TCNGA	2 cut(s)	340, 635
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	3 cut(s)	6, 664, 939
Hpy99I	CGWCG	4 cut(s)	152, 155, 242, 739
HpyAV	CCTTC	3 cut(s)	72, 77, 760
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	814, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	585, 613, 840
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	826
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	309, 712, 924
LmnI	GCTCC	2 cut(s)	324, 341
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	517, 801
MaeI	CTAG	4 cut(s)	471, 648, 795, 949
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	3 cut(s)	311, 714, 926
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	3 cut(s)	309, 712, 924
MluCI	AATT	5 cut(s)	260, 407, 460, 494, 629
MlyI	GAGTC	4 cut(s)	428, 653, 832, 863
MmeI	TCCRAC	1 cut(s)	876
MseI	TTAA	2 cut(s)	579, 663
MslI	CAYNNNNRTG	2 cut(s)	561, 827
MspA1I	CMGCKG	2 cut(s)	136, 349
MspI	CCGG	3 cut(s)	366, 394, 716
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	880
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	3 cut(s)	309, 712, 924
NlaIII	CATG	1 cut(s)	826
NlaIV	GGNNCC	2 cut(s)	332, 570
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	855
NspV	TTCGAA	1 cut(s)	625
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	2 cut(s)	739, 944
PflFI	GACNNNGTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	228
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	8 cut(s)	122, 125, 135, 206, 244, 256, 292, 348
PleI	GAGTC	4 cut(s)	427, 652, 832, 862
PpsI	GAGTC	4 cut(s)	427, 652, 832, 862
PspN4I	GGNNCC	2 cut(s)	332, 570
PspPI	GGNCC	6 cut(s)	144, 157, 192, 351, 433, 442
PsyI	GACNNNGTC	1 cut(s)	366
RsaI	GTAC	3 cut(s)	332, 392, 507
RsaNI	GTAC	3 cut(s)	331, 391, 506
RseI	CAYNNNNRTG	2 cut(s)	561, 827
SalI	GTCGAC	1 cut(s)	937
SaqAI	TTAA	2 cut(s)	579, 663
SatI	GCNGC	8 cut(s)	121, 124, 134, 205, 243, 255, 291, 347
Sau3AI	GATC	3 cut(s)	309, 712, 924
Sau96I	GGNCC	6 cut(s)	144, 157, 192, 351, 433, 442
SchI	GAGTC	4 cut(s)	428, 653, 832, 863
ScrFI	CCNGG	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	517, 801
SfuI	TTCGAA	1 cut(s)	625
SinI	GGWCC	2 cut(s)	144, 192
SmiMI	CAYNNNNRTG	2 cut(s)	561, 827
Sse9I	AATT	5 cut(s)	260, 407, 460, 494, 629
SspMI	CTAG	4 cut(s)	471, 648, 795, 949
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	312, 356, 464, 625, 737, 938
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	260, 407, 460, 494, 629
TauI	GCSGC	7 cut(s)	123, 126, 136, 207, 245, 257, 293
TfiI	GAWTC	2 cut(s)	739, 944
Tru1I	TTAA	2 cut(s)	579, 663
Tru9I	TTAA	2 cut(s)	579, 663
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	855
TseI	GCWGC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	855
TspDTI	ATGAA	5 cut(s)	507, 605, 621, 779, 845
TspGWI	ACGGA	2 cut(s)	163, 523
TspRI	CASTG	1 cut(s)	302
Tth111I	GACNNNGTC	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	144, 192
XapI	RAATTY	3 cut(s)	460, 494, 629
XmiI	GTMKAC	1 cut(s)	938
XspI	CTAG	4 cut(s)	471, 648, 795, 949
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.