pycom04g04820
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001209
Physical Location & Seq
Forward (+)
4462705 .. 4463760
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04820.1

Sequence Viewer

Length: 1056 bp
ATGTCCTCACTCGCCGAACCCAAATCCCGCAAGTTCCCAACGCCCTGTTGGACCCACGACGAATCCCACGCCCTTGTCGCCCTCTACAAGGACCGATGGTTAGCTCTCGGCCGATCCAATCTCAAATCCGCCGACTGGGACTCCGTTGCGTCCTCCGTCAATGACCGATGCCCGCTCGTCTCCCCGCCCAAGACCGCCATACAGTGCCGTCACAAGATGGAGAAGCTCCGGAGGCGCTTTCGGACTGAGAAAGAACGCGTTTCCATACACCCGGGGACGGCTCCCTTTTTCTCTGCCTGGGATCTGTTTCAGCCCATGATCGACTTGGAATGCGACTCTCCTTTGGTTTTCGGGTCCAACCCAGATCCAGAAATCCGCACTGGTGTCCAATATGGAGGGGGGTTTCGGGTCAGAAATTATGAAAGTTACAGGTACTTAGCTGATTCTGATCAAAATTTGAGTGACCCAGATGAGACAACACCAAAAGGTGCCGGATTCGGAGGTGGGTTTCGGGTCAAAGATCCTGTTCGAGGTCCGAATTCAGGAGTTTCAGCTGGTTATGATCGATATGGTAGTCGAGGAAGTGATGGTGGTAGCGGGTTTCCTGTAAAATCATTGGGGGATAGGAATTTGGGGCCTTCAGATTTTAGGATCAAGGGTTATGGTAAAAGTAACGAGAAGTTTAATCCCAAGCTTATCTCGAAGCGCAGTGGCAGCAATGGAGTTGGTTCAGGGTGTGGGTTTAATCAGAAATTTGGAGGGGGTTTGCATTCTAATGGTGTTGGTTTAGAAGATTTGGGTGGGAGTTCATCCGGGAAAGGGGCGGACGATCCGATTGAAGCGATGGCGTCTTCCATAGAGTTTCTGGGAGAAGTGTTTGTGAAGATGGAGAAGAGGAAGGTGGAGATGGCGGGGGAGATGGCGAAGATGAGAATGAAGATGGAGATGAAGCAAAATCAGCTGATAATGGAGTCACAGAAGCAGATGGTGGATGCTTGTGTGAAGGCATTGTGGGAAACCAAGAAGAAGAAGAAGAAGATGAAGGACGAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

352

Amino Acids

38.68

Weight (kDa)

9.31

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 101 7.7e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 488
AccBSI CCGCTC 1 cut(s) 175
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 9 cut(s) 28, 129, 173, 185, 195, 376, 597, 824, 911
AclWI GGATC 6 cut(s) 108, 309, 359, 515, 659, 824
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 4 cut(s) 454, 538, 628, 752
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 848
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 6 cut(s) 88, 135, 277, 530, 542, 819
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 839
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
AluI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
Alw26I GTCTC 2 cut(s) 184, 467
AlwI GGATC 6 cut(s) 108, 309, 359, 515, 659, 824
Ama87I CYCGRG 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 2 cut(s) 109, 635
ApeKI GCWGC 1 cut(s) 714
ApoI RAATTY 4 cut(s) 454, 538, 628, 752
AspLEI GCGC 2 cut(s) 237, 708
AspS9I GGNCC 5 cut(s) 51, 91, 354, 533, 635
AsuC2I CCSGG 3 cut(s) 272, 273, 814
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 4 cut(s) 51, 91, 354, 533
BanI GGYRCC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 726
BccI CCATC 9 cut(s) 90, 211, 581, 838, 880, 901, 913, 934, 979
BceAI ACGGC 2 cut(s) 192, 294
BciT130I CCWGG 1 cut(s) 298
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 3 cut(s) 272, 273, 814
BcoDI GTCTC 2 cut(s) 184, 467
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 1 cut(s) 715
BlsI GCNGC 1 cut(s) 716
Bme1390I CCNGG 4 cut(s) 272, 273, 298, 814
Bme18I GGWCC 4 cut(s) 51, 91, 354, 533
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 5 cut(s) 51, 91, 354, 533, 635
BmiI GGNNCC 5 cut(s) 53, 282, 355, 490, 636
BmrFI CCNGG 4 cut(s) 272, 273, 298, 814
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 158, 982
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 843
BpuMI CCSGG 3 cut(s) 272, 273, 814
Bsa29I ATCGAT 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 271, 272, 297
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 135, 277, 530, 542, 819
Bse1I ACTGG 2 cut(s) 140, 385
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 271, 272, 297
BseGI GGATG 2 cut(s) 809, 997
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 6 cut(s) 88, 135, 277, 530, 542, 819
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 140, 385
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 637
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 565
BsiEI CGRYCG 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 4 cut(s) 229, 272, 492, 813
BslFI GGGAC 2 cut(s) 152, 289
BslI CCNNNNNNNGG 6 cut(s) 88, 135, 277, 530, 542, 819
BsmAI GTCTC 2 cut(s) 184, 467
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 152, 289
BsmI GAATGC 2 cut(s) 335, 769
BsnI GGCC 2 cut(s) 111, 637
BsoBI CYCGRG 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
BspACI CCGC 9 cut(s) 28, 129, 173, 185, 195, 376, 597, 824, 911
BspANI GGCC 2 cut(s) 111, 637
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 565
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 5 cut(s) 53, 282, 355, 490, 636
BspPI GGATC 6 cut(s) 108, 309, 359, 515, 659, 824
BspT107I GGYRCC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 724
BsrI ACTGG 2 cut(s) 140, 385
BssECI CCNNGG 3 cut(s) 271, 272, 297
BssMI GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
BssNI GRCGYC 1 cut(s) 848
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 204, 1053
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 246, 436
BstENI CCTNNNNNAGG 2 cut(s) 86, 528
BstF5I GGATG 2 cut(s) 809, 997
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 237, 708
BstKTI GATC 9 cut(s) 116, 304, 321, 367, 451, 523, 565, 654, 832
BstMAI GTCTC 2 cut(s) 184, 467
BstMBI GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 77, 232, 714, 958
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 4 cut(s) 270, 271, 296, 812
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 3 cut(s) 301, 364, 520
BstYI RGATCY 3 cut(s) 301, 364, 520
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 2 cut(s) 111, 637
BsuTUI ATCGAT 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 2 cut(s) 809, 997
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 3 cut(s) 209, 378, 715
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 2 cut(s) 237, 708
Cfr13I GGNCC 5 cut(s) 51, 91, 354, 533, 635
Cfr9I CCCGGG 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 2 cut(s) 138, 837
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 316
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 246, 436
DpnI GATC 9 cut(s) 115, 303, 320, 366, 450, 522, 564, 653, 831
DpnII GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EciI GGCGGA 2 cut(s) 118, 839
EclXI CGGCCG 1 cut(s) 109
Eco47I GGWCC 4 cut(s) 51, 91, 354, 533
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 271
EcoNI CCTNNNNNAGG 2 cut(s) 86, 528
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 319
FaiI YATR 9 cut(s) 200, 266, 317, 393, 420, 561, 570, 663, 857
FaqI GGGAC 2 cut(s) 152, 289
FatI CATG 1 cut(s) 315
FauI CCCGC 5 cut(s) 35, 180, 192, 590, 904
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 715
FokI GGATG 2 cut(s) 796, 1004
Fsp4HI GCNGC 1 cut(s) 715
GlaI GCGC 2 cut(s) 236, 707
GluI GCNGC 1 cut(s) 715
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 111, 637
HapII CCGG 4 cut(s) 229, 272, 492, 813
HgaI GACGC 2 cut(s) 138, 837
HhaI GCGC 2 cut(s) 237, 708
Hin1I GRCGYC 1 cut(s) 848
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 2 cut(s) 235, 706
HinP1I GCGC 2 cut(s) 235, 706
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 6 cut(s) 62, 140, 335, 443, 495, 971
HpaII CCGG 4 cut(s) 229, 272, 492, 813
Hpy188I TCNGA 8 cut(s) 243, 413, 448, 500, 537, 643, 750, 834
Hpy188III TCNNGA 4 cut(s) 229, 368, 543, 700
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 648, 892, 997, 1036
HpyCH4III ACNGT 2 cut(s) 204, 1053
HpyCH4V TGCA 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 232, 714, 958
HpyF3I CTNAG 2 cut(s) 246, 436
Hsp92I GRCGYC 1 cut(s) 848
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 2 cut(s) 235, 706
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
LmnI GCTCC 2 cut(s) 231, 286
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 2 cut(s) 158, 982
MaeIII GTNAC 5 cut(s) 209, 425, 461, 671, 972
MalI GATC 9 cut(s) 115, 303, 320, 366, 450, 522, 564, 653, 831
MbiI CCGCTC 1 cut(s) 175
MboI GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
MflI RGATCY 3 cut(s) 301, 364, 520
MluCI AATT 5 cut(s) 415, 454, 538, 628, 752
MluI ACGCGT 1 cut(s) 256
MlyI GAGTC 3 cut(s) 134, 329, 980
MmeI TCCRAC 2 cut(s) 29, 381
MroI TCCGGA 1 cut(s) 228
MseI TTAA 2 cut(s) 684, 744
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 554, 961
MspI CCGG 4 cut(s) 229, 272, 492, 813
MspR9I CCNGG 4 cut(s) 272, 273, 298, 814
Mva1269I GAATGC 2 cut(s) 335, 769
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 77, 232, 714, 958
NciI CCSGG 3 cut(s) 272, 273, 814
NdeII GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 5 cut(s) 53, 282, 355, 490, 636
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 3 cut(s) 209, 461, 972
PctI GAATGC 2 cut(s) 335, 769
PfeI GAWTC 3 cut(s) 62, 443, 495
PfoI TCCNGGA 1 cut(s) 812
PkrI GCNGC 1 cut(s) 716
PleI GAGTC 3 cut(s) 134, 329, 979
PpsI GAGTC 3 cut(s) 134, 329, 979
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 5 cut(s) 53, 282, 355, 490, 636
PspPI GGNCC 5 cut(s) 51, 91, 354, 533, 635
PsuI RGATCY 3 cut(s) 301, 364, 520
PvuII CAGCTG 2 cut(s) 554, 961
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 2 cut(s) 684, 744
SatI GCNGC 1 cut(s) 715
Sau3AI GATC 9 cut(s) 113, 301, 318, 364, 448, 520, 562, 651, 829
Sau96I GGNCC 5 cut(s) 51, 91, 354, 533, 635
SchI GAGTC 3 cut(s) 134, 329, 980
ScrFI CCNGG 4 cut(s) 272, 273, 298, 814
SfaNI GCATC 2 cut(s) 158, 982
SinI GGWCC 4 cut(s) 51, 91, 354, 533
SmaI CCCGGG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 5 cut(s) 415, 454, 538, 628, 752
SsiI CCGC 9 cut(s) 28, 129, 173, 185, 195, 376, 597, 824, 911
StyD4I CCNGG 4 cut(s) 270, 271, 296, 812
TaaI ACNGT 2 cut(s) 204, 1053
TaqI TCGA 5 cut(s) 321, 529, 565, 577, 701
TaqII GACCGA 2 cut(s) 108, 180
TasI AATT 5 cut(s) 415, 454, 538, 628, 752
TfiI GAWTC 3 cut(s) 62, 443, 495
Tru1I TTAA 2 cut(s) 684, 744
Tru9I TTAA 2 cut(s) 684, 744
TscAI CASTG 3 cut(s) 209, 385, 715
TseFI GTSAC 3 cut(s) 209, 461, 972
TseI GCWGC 1 cut(s) 714
Tsp45I GTSAC 3 cut(s) 209, 461, 972
TspDTI ATGAA 5 cut(s) 435, 798, 950, 962, 1055
TspGWI ACGGA 2 cut(s) 133, 145
TspMI CCCGGG 1 cut(s) 271
TspRI CASTG 3 cut(s) 209, 385, 715
VpaK11BI GGWCC 4 cut(s) 51, 91, 354, 533
XagI CCTNNNNNAGG 2 cut(s) 86, 528
XapI RAATTY 4 cut(s) 454, 538, 628, 752
XcmI CCANNNNNNNNNTGG 3 cut(s) 45, 322, 862
XmaI CCCGGG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.