RLG00000003367
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001209
Physical Location & Seq
Forward (+)
47651661 .. 47652644
984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003367

Sequence Viewer

Length: 984 bp
ATGTCCACCGTCGTCACCACCGCCCTCCCCACCAAACGCCGCCGGGTCCCACCCCCCTGCTGGACCCAGGACGAGGCCCGCTCCCTCATCCTCGCCTACCGCGACCGCTGGTTCGCTCTCCGCCGCACCAATCTGAAATCCGCCGACTGGGACCACGTCGCAGCCGCCACCGCCGCCGCGGCTCCCTCCTCCCCGCCCAAGACCGCGCTGCAGTGCCGGCATAAGATGGAGAAGCTTCGCAAGCGGTACCGCGCTGAGAAGCAGCGGGCTTCTGGGTACCCGGGTCGGTTTACCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGGCCCGCATCCGGGATTGGATAGTGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTAATGGAAATGTTGGTAGGGATTTTAGTCCTGATGTTGATGAGAATTCTAGCTTTTATTCCGAAGGTGATGATTATGTTAATCAAGGGTTTAGGCCAAAGAGTAATGGCAAGACTGATGTGAATCTTAAGCACAGTTTCAGGAAACATGGGGACTATGGAGTTGGTATTAGAAGTGATAGGGATTTTGTACCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGTAAAGCGCAATGTGCGTTATAAGGAGTTTGATGGGTATTGTTGTTCATCAGGATCAAAGTTTGTTGAGAAGAGTAGTGTTGTTGGGATTAAGAGAGATGTGGATCCTGTTGAAGACTTGGCTTCATCGATTATGCGGTTGGGAGAAGGGTTTGTGAGGATGGAGAAAAGGAAGATGGAAATGACCATGGAGATTGAGAAGATGCGAATGGAGATGGAGCTGAAGCGTAATGAGGCCATGATCGAATCCCACCAGCAGATTGTGGATGCTTTTGTGAATGCATTATTGGAAAGGAAGAGCAAAAAGAAGGCAAAGGTGGAGTCTTCCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

328

Amino Acids

36.93

Weight (kDa)

9.62

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 19 - 110 2e-16 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 41 - 107 3.1e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 613
Acc65I GGTACC 2 cut(s) 246, 276
AccB1I GGYRCC 2 cut(s) 246, 276
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 4 cut(s) 102, 179, 206, 252
AclWI GGATC 3 cut(s) 709, 746, 759
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 2 cut(s) 410, 457
AcuI CTGAAG 1 cut(s) 890
AfaI GTAC 3 cut(s) 248, 278, 603
AfiI CCNNNNNNNGG 7 cut(s) 60, 73, 147, 300, 346, 347, 615
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 1 cut(s) 761
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AluBI AGCT 3 cut(s) 235, 465, 868
AluI AGCT 3 cut(s) 235, 465, 868
AlwI GGATC 3 cut(s) 709, 746, 759
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 5 cut(s) 75, 337, 506, 617, 882
ApeKI GCWGC 3 cut(s) 161, 208, 262
ApoI RAATTY 2 cut(s) 410, 457
ArsI GACNNNNNNTTYG 3 cut(s) 95, 127, 953
Asp718I GGTACC 2 cut(s) 246, 276
AspLEI GCGC 3 cut(s) 208, 254, 657
AspS9I GGNCC 5 cut(s) 46, 63, 76, 151, 338
AsuC2I CCSGG 4 cut(s) 44, 281, 282, 348
AsuHPI GGTGA 4 cut(s) 7, 377, 418, 491
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 3 cut(s) 46, 63, 151
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 2 cut(s) 246, 276
BbsI GAAGAC 2 cut(s) 768, 963
BbvI GCAGC 3 cut(s) 173, 195, 274
BccI CCATC 6 cut(s) 220, 635, 674, 802, 817, 856
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 4 cut(s) 44, 281, 282, 348
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 9 cut(s) 40, 124, 162, 165, 174, 177, 180, 209, 263
BlsI GCNGC 9 cut(s) 41, 125, 163, 166, 175, 178, 181, 210, 264
Bme1390I CCNGG 5 cut(s) 44, 68, 281, 282, 348
Bme18I GGWCC 3 cut(s) 46, 63, 151
BmeT110I CYCGRG 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 5 cut(s) 46, 63, 76, 151, 338
BmiI GGNNCC 8 cut(s) 47, 48, 65, 152, 183, 248, 278, 753
BmrFI CCNGG 5 cut(s) 44, 68, 281, 282, 348
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 352, 840, 904
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 768, 963
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuMI CCSGG 4 cut(s) 44, 281, 282, 348
Bsa29I ATCGAT 1 cut(s) 776
BsaBI GATNNNNATC 2 cut(s) 534, 750
BsaJI CCNNGG 4 cut(s) 66, 177, 280, 834
Bsc4I CCNNNNNNNGG 7 cut(s) 60, 73, 147, 300, 346, 347, 615
Bse118I RCCGGY 2 cut(s) 216, 608
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 2 cut(s) 534, 750
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 776
BseDI CCNNGG 4 cut(s) 66, 177, 280, 834
BseGI GGATG 5 cut(s) 87, 328, 343, 813, 919
BseJI GATNNNNATC 2 cut(s) 534, 750
BseLI CCNNNNNNNGG 7 cut(s) 60, 73, 147, 300, 346, 347, 615
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 173, 195, 274
Bsh1236I CGCG 4 cut(s) 102, 179, 206, 252
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 77, 339, 508, 619, 884
BshNI GGYRCC 2 cut(s) 246, 276
BshVI ATCGAT 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 6 cut(s) 43, 217, 281, 336, 347, 609
BslFI GGGAC 3 cut(s) 32, 164, 578
BslI CCNNNNNNNGG 7 cut(s) 60, 73, 147, 300, 346, 347, 615
BsmFI GGGAC 3 cut(s) 32, 164, 578
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 5 cut(s) 77, 339, 508, 619, 884
BsoBI CYCGRG 1 cut(s) 280
Bsp143I GATC 3 cut(s) 701, 751, 888
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 5 cut(s) 77, 339, 508, 619, 884
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 776
BspFNI CGCG 4 cut(s) 102, 179, 206, 252
BspLI GGNNCC 8 cut(s) 47, 48, 65, 152, 183, 248, 278, 753
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 709, 746, 759
BspQI GCTCTTC 1 cut(s) 938
BspT107I GGYRCC 2 cut(s) 246, 276
BspTI CTTAAG 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 2 cut(s) 216, 608
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 2 cut(s) 216, 608
BssECI CCNNGG 4 cut(s) 66, 177, 280, 834
BssMI GATC 3 cut(s) 701, 751, 888
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 10, 548
Bst6I CTCTTC 2 cut(s) 713, 938
BstAFI CTTAAG 1 cut(s) 539
BstC8I GCNNGC 5 cut(s) 79, 218, 242, 267, 341
BstDEI CTNAG 2 cut(s) 255, 981
BstDSI CCRYGG 2 cut(s) 177, 834
BstF5I GGATG 5 cut(s) 87, 328, 343, 813, 919
BstFNI CGCG 4 cut(s) 102, 179, 206, 252
BstHHI GCGC 3 cut(s) 208, 254, 657
BstKTI GATC 3 cut(s) 704, 754, 891
BstMBI GATC 3 cut(s) 701, 751, 888
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 6 cut(s) 170, 173, 179, 217, 241, 661
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 5 cut(s) 42, 66, 279, 280, 346
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 4 cut(s) 102, 179, 206, 252
BstV1I GCAGC 3 cut(s) 173, 195, 274
BstV2I GAAGAC 2 cut(s) 768, 963
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
Bsu15I ATCGAT 1 cut(s) 776
BsuRI GGCC 5 cut(s) 77, 339, 508, 619, 884
BsuTUI ATCGAT 1 cut(s) 776
BtgI CCRYGG 2 cut(s) 177, 834
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 5 cut(s) 87, 328, 343, 813, 919
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 5 cut(s) 79, 218, 242, 267, 341
CfoI GCGC 3 cut(s) 208, 254, 657
Cfr10I RCCGGY 2 cut(s) 216, 608
Cfr13I GGNCC 5 cut(s) 46, 63, 76, 151, 338
Cfr42I CCGCGG 1 cut(s) 180
Cfr9I CCCGGG 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 776
Csp6I GTAC 3 cut(s) 247, 277, 602
CviAII CATG 5 cut(s) 319, 560, 835, 886, 977
CviQI GTAC 3 cut(s) 247, 277, 602
DdeI CTNAG 2 cut(s) 255, 981
DpnI GATC 3 cut(s) 703, 753, 890
DpnII GATC 3 cut(s) 701, 751, 888
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 713, 938
EarI CTCTTC 2 cut(s) 713, 938
EciI GGCGGA 2 cut(s) 110, 130
Eco130I CCWWGG 1 cut(s) 834
Eco47I GGWCC 3 cut(s) 46, 63, 151
Eco57I CTGAAG 1 cut(s) 890
Eco88I CYCGRG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 834
EcoT22I ATGCAT 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 5 cut(s) 322, 563, 838, 889, 980
FaqI GGGAC 3 cut(s) 32, 164, 578
FatI CATG 5 cut(s) 318, 559, 834, 885, 976
FauI CCCGC 4 cut(s) 86, 201, 258, 348
Fnu4HI GCNGC 9 cut(s) 40, 124, 162, 165, 174, 177, 180, 209, 263
FokI GGATG 5 cut(s) 74, 330, 335, 820, 926
Fsp4HI GCNGC 9 cut(s) 40, 124, 162, 165, 174, 177, 180, 209, 263
FspBI CTAG 1 cut(s) 462
GlaI GCGC 3 cut(s) 207, 253, 656
GluI GCNGC 9 cut(s) 40, 124, 162, 165, 174, 177, 180, 209, 263
HaeIII GGCC 5 cut(s) 77, 339, 508, 619, 884
HapII CCGG 6 cut(s) 43, 217, 281, 336, 347, 609
HhaI GCGC 3 cut(s) 208, 254, 657
Hin1II CATG 5 cut(s) 322, 563, 838, 889, 980
Hin6I GCGC 3 cut(s) 206, 252, 655
HinP1I GCGC 3 cut(s) 206, 252, 655
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 4 cut(s) 332, 535, 893, 968
HpaII CCGG 6 cut(s) 43, 217, 281, 336, 347, 609
HphI GGTGA 4 cut(s) 7, 377, 418, 491
Hpy166II GTNNAC 2 cut(s) 6, 291
Hpy188I TCNGA 2 cut(s) 135, 475
Hpy188III TCNNGA 3 cut(s) 443, 553, 699
Hpy8I GTNNAC 2 cut(s) 6, 291
Hpy99I CGWCG 3 cut(s) 14, 161, 301
HpyAV CCTTC 3 cut(s) 470, 788, 949
HpyCH4III ACNGT 2 cut(s) 10, 548
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 211, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 173, 179, 217, 241, 661
HpyF3I CTNAG 2 cut(s) 255, 981
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 5 cut(s) 322, 563, 838, 889, 980
HspAI GCGC 3 cut(s) 206, 252, 655
KflI GGGWCCC 1 cut(s) 46
KpnI GGTACC 2 cut(s) 250, 280
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 3 cut(s) 701, 751, 888
LguI GCTCTTC 1 cut(s) 938
LmnI GCTCC 3 cut(s) 86, 187, 865
Lsp1109I GCAGC 3 cut(s) 173, 195, 274
LweI GCATC 3 cut(s) 352, 840, 904
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 703, 753, 890
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 701, 751, 888
MboII GAAGA 6 cut(s) 730, 773, 832, 859, 955, 963
MflI RGATCY 1 cut(s) 751
MluCI AATT 3 cut(s) 400, 410, 457
MlyI GAGTC 2 cut(s) 341, 977
Mph1103I ATGCAT 1 cut(s) 931
MroNI GCCGGC 1 cut(s) 216
MseI TTAA 5 cut(s) 389, 414, 492, 540, 738
MspA1I CMGCKG 3 cut(s) 108, 179, 265
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 6 cut(s) 43, 217, 281, 336, 347, 609
MspR9I CCNGG 5 cut(s) 44, 68, 281, 282, 348
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 4 cut(s) 102, 179, 206, 252
MwoI GCNNNNNNNGC 6 cut(s) 170, 173, 179, 217, 241, 661
NaeI GCCGGC 1 cut(s) 218
NciI CCSGG 4 cut(s) 44, 281, 282, 348
NcoI CCATGG 1 cut(s) 834
NdeII GATC 3 cut(s) 701, 751, 888
NgoMIV GCCGGC 1 cut(s) 216
NlaIII CATG 5 cut(s) 322, 563, 838, 889, 980
NlaIV GGNNCC 8 cut(s) 47, 48, 65, 152, 183, 248, 278, 753
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 931
PdiI GCCGGC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 535, 893
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 9 cut(s) 41, 125, 163, 166, 175, 178, 181, 210, 264
PleI GAGTC 2 cut(s) 340, 976
PpsI GAGTC 2 cut(s) 340, 976
PpuMI RGGWCCY 1 cut(s) 46
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 8 cut(s) 47, 48, 65, 152, 183, 248, 278, 753
PspPI GGNCC 5 cut(s) 46, 63, 76, 151, 338
PspPPI RGGWCCY 1 cut(s) 46
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 751
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 3 cut(s) 248, 278, 603
RsaNI GTAC 3 cut(s) 247, 277, 602
SacII CCGCGG 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 938
SaqAI TTAA 5 cut(s) 389, 414, 492, 540, 738
SatI GCNGC 9 cut(s) 40, 124, 162, 165, 174, 177, 180, 209, 263
Sau3AI GATC 3 cut(s) 701, 751, 888
Sau96I GGNCC 5 cut(s) 46, 63, 76, 151, 338
SchI GAGTC 2 cut(s) 341, 977
ScrFI CCNGG 5 cut(s) 44, 68, 281, 282, 348
SetI ASST 9 cut(s) 159, 237, 296, 379, 467, 481, 607, 870, 966
SfaNI GCATC 3 cut(s) 352, 840, 904
SfcI CTRYAG 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SinI GGWCC 3 cut(s) 46, 63, 151
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 3 cut(s) 400, 410, 457
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 5 cut(s) 42, 66, 279, 280, 346
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 2 cut(s) 10, 548
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 776, 891
TasI AATT 3 cut(s) 400, 410, 457
TauI GCSGC 6 cut(s) 42, 126, 167, 176, 179, 182
TfiI GAWTC 2 cut(s) 535, 893
Tru1I TTAA 5 cut(s) 389, 414, 492, 540, 738
Tru9I TTAA 5 cut(s) 389, 414, 492, 540, 738
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 161, 208, 262
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 302, 339, 684, 762
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 3 cut(s) 46, 63, 151
XapI RAATTY 2 cut(s) 410, 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmaI CCCGGG 1 cut(s) 280
XspI CTAG 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.