Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

12210212 .. 12212856

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCCACAGGACTATTGGCCTCTCAATCTGGATCTGGCATATTGCTGGACCATCAACCATCGTCTTCTCTTTTTCCTGCACTTTCCCTCACACTTTCAGGTTCTCTCTACCTTAATTTTTTTTGTTGTCAGATTTATTTGCAGGTTGCAATATTTATAATCTTAGGGTTTCGAATTAGGGGCTTGTGCAACAACCTATCAAATATCATATTTGTTGCTCTCGTTACTAAATTGGAGTTTATCTCGACATGCAGATTGACTTTCCATGCCGAGTTCAGTCCCTCTGATATCTATTTAGATCGTATGGATATACTGGTAGTTGGGGTCAAGAAGCATGGGGTGTGGCTTTTAGCAAAAAATGTAAGTAAAGCAATGTGCAACCCTTGTGCTAATGTTTCAATGTCGTTTATTTTCAGATGTCTTGGAAATAATTGGAAGAGACTTGATAATGTATTAGGGTGTGAGAATTACTATTTAGGTGGTGTTGATGCCTGTGGGGAAGTTACAGTAGTACGTAAGGTAGAAAGCCAGCAATCTATCCATTTCTTTACAGCCGTTTCTTCTTTTCTCTTCTTTCATCTGTTTATCAGGTATCATGTTTCTGATTGTTCTTCATGGCCTTATGGCGCTATCAAGAATTGCATGTTGATATATCTTTATTTTCATGGCATTATGGCTCTGTCTGGTCATATGGGATCTGATATGATCACTTCTGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.7

Weight (kDa)

8.0

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	40, 703
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	513
AgsI	TTSAA	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	2 cut(s)	40, 703
AoxI	GGCC	3 cut(s)	3, 18, 617
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	3 cut(s)	60, 67, 710
BceAI	ACGGC	1 cut(s)	539
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	5, 20, 619
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	5, 20, 619
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	32, 298, 695, 705
BspANI	GGCC	3 cut(s)	5, 20, 619
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	40, 703
BspT104I	TTCGAA	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	4 cut(s)	32, 298, 695, 705
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	431, 575
BstBAI	YACGTR	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	4 cut(s)	35, 301, 698, 708
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	32, 298, 695, 705
BstNSI	RCATGY	2 cut(s)	252, 646
BstSNI	TACGTA	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	32, 695
BstYI	RGATCY	2 cut(s)	32, 695
BsuRI	GGCC	3 cut(s)	5, 20, 619
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	530
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	7 cut(s)	249, 266, 335, 596, 615, 643, 665
CviJI	RGCY	8 cut(s)	5, 20, 183, 346, 528, 554, 619, 677
CviKI_1	RGCY	8 cut(s)	5, 20, 183, 346, 528, 554, 619, 677
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	4 cut(s)	34, 300, 697, 707
DpnII	GATC	4 cut(s)	32, 298, 695, 705
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	431, 575
EarI	CTCTTC	2 cut(s)	431, 575
Eco105I	TACGTA	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	289
FaeI	CATG	7 cut(s)	252, 269, 338, 599, 618, 646, 668
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	7 cut(s)	248, 265, 334, 595, 614, 642, 664
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	705
GlaI	GCGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	5, 20, 619
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	7 cut(s)	252, 269, 338, 599, 618, 646, 668
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
Hpy188I	TCNGA	6 cut(s)	132, 286, 416, 604, 700, 715
Hpy188III	TCNNGA	4 cut(s)	30, 244, 328, 634
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	7 cut(s)	80, 142, 149, 189, 252, 378, 642
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	7 cut(s)	252, 269, 338, 599, 618, 646, 668
HspAI	GCGC	1 cut(s)	627
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	32, 298, 695, 705
LweI	GCATC	1 cut(s)	478
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	223, 502
MalI	GATC	4 cut(s)	34, 300, 697, 707
MboI	GATC	4 cut(s)	32, 298, 695, 705
MboII	GAAGA	5 cut(s)	57, 448, 552, 562, 603
MflI	RGATCY	2 cut(s)	32, 695
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	115, 174, 230, 430, 466, 637
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	31, 98, 292
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	5
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	4 cut(s)	32, 298, 695, 705
NlaIII	CATG	7 cut(s)	252, 269, 338, 599, 618, 646, 668
NmeAIII	GCCGAG	1 cut(s)	295
NspI	RCATGY	2 cut(s)	252, 646
NspV	TTCGAA	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	32, 695
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	32, 298, 695, 705
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	8 cut(s)	103, 114, 147, 198, 481, 517, 522, 593
SfaNI	GCATC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	1 cut(s)	49
SnaBI	TACGTA	1 cut(s)	515
Sse9I	AATT	6 cut(s)	115, 174, 230, 430, 466, 637
SspI	AATATT	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	172, 245
TasI	AATT	6 cut(s)	115, 174, 230, 430, 466, 637
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	566, 603, 653
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	2 cut(s)	252, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.