Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

47540075 .. 47544179

Gene Structure 4105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003356

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCCTCACCCACCCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCTCCCAATTCCCCCTCGTCTCCCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGACTTCGAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATGTGGTGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTTTCTTCGAAAATTCGGAGGAGTGGAGTCTAGTGGTGTTGGTGTTAAAGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCAGTTGAAGAGATGGTTTCGTCGATTCAGTTGCTTGGGGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAAATGAAGCAGACTCAGGTGATTATGGAGTCACAGCAACAGATAGTGAATGCTTGTGTGAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATTAAGGCGGTGTCGACTGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

284

Amino Acids

31.63

Weight (kDa)

9.74

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	14 - 104	1.6e-15	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 469
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	839
AccII	CGCG	1 cut(s)	194
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	3 cut(s)	361, 395, 530
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	233, 408
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	82, 499, 623
AhdI	GACNNNNNGTC	1 cut(s)	91
AluBI	AGCT	3 cut(s)	220, 383, 513
AluI	AGCT	3 cut(s)	220, 383, 513
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	5 cut(s)	57, 103, 252, 334, 342
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	361, 395, 530
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	365, 437, 757
AsuII	TTCGAA	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	45, 93
BanI	GGYRCC	2 cut(s)	231, 469
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	622, 679, 685
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	549, 696, 850
BisI	GCNGC	7 cut(s)	22, 25, 35, 106, 144, 192, 248
BlsI	GCNGC	7 cut(s)	23, 26, 36, 107, 145, 193, 249
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	45, 93
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
BmiI	GGNNCC	2 cut(s)	233, 471
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	418, 702
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	100, 281
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 403, 433, 571, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	134, 617
BseDI	CCNNGG	2 cut(s)	100, 281
BseGI	GGATG	2 cut(s)	139, 397
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	528, 755
BseNI	ACTGG	2 cut(s)	134, 617
BseRI	GAGGAG	2 cut(s)	552, 610
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	2 cut(s)	106, 271
BshFI	GGCC	5 cut(s)	59, 105, 254, 336, 344
BshNI	GGYRCC	2 cut(s)	231, 469
BsiEI	CGRYCG	2 cut(s)	106, 271
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	5 cut(s)	59, 105, 254, 336, 344
Bsp119I	TTCGAA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	210, 613
BspANI	GGCC	5 cut(s)	59, 105, 254, 336, 344
BspCNI	CTCAG	2 cut(s)	527, 754
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	233, 471
BspPI	GGATC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	2 cut(s)	231, 469
BsrBI	CCGCTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	134, 617
BssECI	CCNNGG	2 cut(s)	100, 281
BssMI	GATC	2 cut(s)	210, 613
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	3 cut(s)	618, 671, 812
BstACI	GRCGYC	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	486, 514, 741
BstF5I	GGATG	2 cut(s)	139, 397
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	213, 616
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	210, 613
BstMCI	CGRYCG	2 cut(s)	106, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	59, 105, 254, 336, 344
BtsCI	GGATG	2 cut(s)	139, 397
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
Csp6I	GTAC	2 cut(s)	232, 407
CviAII	CATG	1 cut(s)	724
CviQI	GTAC	2 cut(s)	232, 407
DdeI	CTNAG	3 cut(s)	486, 514, 741
DpnI	GATC	2 cut(s)	212, 615
DpnII	GATC	2 cut(s)	210, 613
DriI	GACNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	618, 671, 812
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	3 cut(s)	618, 671, 812
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	45, 93
Eco52I	CGGCCG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	727
FaiI	YATR	6 cut(s)	302, 459, 663, 665, 725, 752
FatI	CATG	1 cut(s)	723
FauI	CCCGC	3 cut(s)	26, 39, 243
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	7 cut(s)	22, 25, 35, 106, 144, 192, 248
FokI	GGATG	2 cut(s)	146, 404
Fsp4HI	GCNGC	7 cut(s)	22, 25, 35, 106, 144, 192, 248
FspBI	CTAG	3 cut(s)	549, 696, 850
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	7 cut(s)	22, 25, 35, 106, 144, 192, 248
HaeIII	GGCC	5 cut(s)	59, 105, 254, 336, 344
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HinfI	GANTC	6 cut(s)	320, 545, 640, 739, 755, 845
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	3 cut(s)	365, 437, 757
Hpy166II	GTNNAC	1 cut(s)	840
Hpy188I	TCNGA	2 cut(s)	241, 536
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	840
Hpy99I	CGWCG	4 cut(s)	53, 56, 143, 640
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	715, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	486, 514, 741
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	727
HspAI	GCGC	1 cut(s)	194
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	210, 613
LmnI	GCTCC	2 cut(s)	225, 242
LpnPI	CCDG	9 cut(s)	28, 115, 280, 309, 417, 453, 501, 630, 728
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	418, 702
MaeI	CTAG	3 cut(s)	549, 696, 850
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	756
MalI	GATC	2 cut(s)	212, 615
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	2 cut(s)	210, 613
MluCI	AATT	5 cut(s)	161, 308, 361, 395, 530
MlyI	GAGTC	4 cut(s)	329, 554, 733, 764
MmeI	TCCRAC	1 cut(s)	777
MseI	TTAA	3 cut(s)	480, 564, 828
MslI	CAYNNNNRTG	2 cut(s)	462, 728
MspA1I	CMGCKG	2 cut(s)	37, 250
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	781
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	210, 613
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	2 cut(s)	233, 471
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	756
NspV	TTCGAA	1 cut(s)	526
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	640, 845
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	23, 26, 36, 107, 145, 193, 249
PleI	GAGTC	4 cut(s)	328, 553, 733, 763
PpsI	GAGTC	4 cut(s)	328, 553, 733, 763
PspN4I	GGNNCC	2 cut(s)	233, 471
PspPI	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
PsyI	GACNNNGTC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	233, 408
RsaNI	GTAC	2 cut(s)	232, 407
RseI	CAYNNNNRTG	2 cut(s)	462, 728
SalI	GTCGAC	1 cut(s)	838
SaqAI	TTAA	3 cut(s)	480, 564, 828
SatI	GCNGC	7 cut(s)	22, 25, 35, 106, 144, 192, 248
Sau3AI	GATC	2 cut(s)	210, 613
Sau96I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
SchI	GAGTC	4 cut(s)	329, 554, 733, 764
ScrFI	CCNGG	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	418, 702
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	2 cut(s)	45, 93
SmiMI	CAYNNNNRTG	2 cut(s)	462, 728
Sse9I	AATT	5 cut(s)	161, 308, 361, 395, 530
SspMI	CTAG	3 cut(s)	549, 696, 850
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	7 cut(s)	213, 257, 365, 371, 526, 638, 839
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	161, 308, 361, 395, 530
TauI	GCSGC	6 cut(s)	24, 27, 37, 108, 146, 194
TfiI	GAWTC	2 cut(s)	640, 845
Tru1I	TTAA	3 cut(s)	480, 564, 828
Tru9I	TTAA	3 cut(s)	480, 564, 828
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	756
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	756
TspDTI	ATGAA	5 cut(s)	408, 506, 522, 680, 746
TspGWI	ACGGA	2 cut(s)	64, 424
TspRI	CASTG	1 cut(s)	203
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	45, 93
XapI	RAATTY	3 cut(s)	361, 395, 530
XmiI	GTMKAC	1 cut(s)	839
XspI	CTAG	3 cut(s)	549, 696, 850
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.