RLG00000014149
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001209
Physical Location & Seq
Forward (+)
48154433 .. 48154804
372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014149

Sequence Viewer

Length: 372 bp
ATGTCTGTCTCTCATCTCTCACTCTACATGCTCTCCTTTATCTTGTGGGACCACGTCGCCGCTGCCACAGCTTTCGCAGCTCCATCCTCGCCGCCTAAGACCGCGTTGCAGTGCCGTCATAAGATGGAGAAGCTCCGCAAGCGGTACCGTCCTGAGAAGCAGAGGGCTTCTAGGTACCTGGGTCGGTCTTCCTCCTCGTCATGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGACCCGGATCGGGGATTGGATAATGGTGGTGAGTTTGGAGGTGGGTTTTCATTAAAGGCTCTTAATTTGATGAAATTTGATGGAAATGGAGGGTGGAATGGTCGGATTGGTGGCGGGACGACGAGGGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

9.66

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 77 4.3e-09 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 16 - 74 5.4e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 144, 174
AccB1I GGYRCC 2 cut(s) 144, 174
AccII CGCG 1 cut(s) 104
AciI CCGC 6 cut(s) 60, 92, 102, 136, 142, 351
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 2 cut(s) 146, 176
AfiI CCNNNNNNNGG 3 cut(s) 201, 247, 248
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 71, 80, 133
AluI AGCT 3 cut(s) 71, 80, 133
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 62, 77
ApoI RAATTY 1 cut(s) 311
Asp718I GGTACC 2 cut(s) 144, 174
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BanI GGYRCC 2 cut(s) 144, 174
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 49, 89
BccI CCATC 3 cut(s) 91, 118, 311
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 171
BisI GCNGC 4 cut(s) 60, 63, 78, 92
BlsI GCNGC 4 cut(s) 61, 64, 79, 93
Bme1390I CCNGG 2 cut(s) 179, 242
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 50, 146, 176
BmrFI CCNGG 2 cut(s) 179, 242
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 247, 248
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 83, 229
BseLI CCNNNNNNNGG 3 cut(s) 201, 247, 248
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 49, 89
Bsh1236I CGCG 1 cut(s) 104
BshNI GGYRCC 2 cut(s) 144, 174
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 62, 367
BslI CCNNNNNNNGG 3 cut(s) 201, 247, 248
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 62, 367
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 6 cut(s) 60, 92, 102, 136, 142, 351
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 50, 146, 176
BspPI GGATC 1 cut(s) 252
BspT107I GGYRCC 2 cut(s) 144, 174
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 3 cut(s) 96, 153, 369
BstF5I GGATG 2 cut(s) 83, 229
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 139
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 177, 240
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 49, 89
BstV2I GAAGAC 1 cut(s) 180
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 83, 229
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 145, 175
CviAII CATG 3 cut(s) 28, 201, 220
CviJI RGCY 7 cut(s) 71, 80, 133, 167, 206, 296, 368
CviKI_1 RGCY 7 cut(s) 71, 80, 133, 167, 206, 296, 368
CviQI GTAC 2 cut(s) 145, 175
DdeI CTNAG 3 cut(s) 96, 153, 369
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 3 cut(s) 31, 204, 223
FaiI YATR 4 cut(s) 29, 120, 202, 221
FaqI GGGAC 2 cut(s) 62, 367
FatI CATG 3 cut(s) 27, 200, 219
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 4 cut(s) 60, 63, 78, 92
FokI GGATG 2 cut(s) 70, 236
Fsp4HI GCNGC 4 cut(s) 60, 63, 78, 92
FspBI CTAG 1 cut(s) 171
GluI GCNGC 4 cut(s) 60, 63, 78, 92
HapII CCGG 1 cut(s) 242
Hin1II CATG 3 cut(s) 31, 204, 223
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 238, 342
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 59, 361
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 139
HpyF3I CTNAG 3 cut(s) 96, 153, 369
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 31, 204, 223
KpnI GGTACC 2 cut(s) 148, 178
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 85, 138
LpnPI CCDG 4 cut(s) 164, 165, 191, 255
Lsp1109I GCAGC 2 cut(s) 49, 89
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 54
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 180
MluCI AATT 2 cut(s) 301, 311
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 261, 320
MnlI CCTC 8 cut(s) 97, 156, 202, 205, 269, 320, 354, 358
MseI TTAA 2 cut(s) 290, 300
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 179, 242
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 139
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 31, 204, 223
NlaIV GGNNCC 3 cut(s) 50, 146, 176
NspI RCATGY 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 4 cut(s) 61, 64, 79, 93
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 50, 146, 176
PspPI GGNCC 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 2 cut(s) 146, 176
RsaNI GTAC 2 cut(s) 145, 175
SaqAI TTAA 2 cut(s) 290, 300
SatI GCNGC 4 cut(s) 60, 63, 78, 92
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 179, 242
SetI ASST 7 cut(s) 57, 73, 82, 135, 176, 180, 280
SinI GGWCC 1 cut(s) 49
Sse9I AATT 2 cut(s) 301, 311
SsiI CCGC 6 cut(s) 60, 92, 102, 136, 142, 351
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 177, 240
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 57
TaqII GACCGA 1 cut(s) 174
TasI AATT 2 cut(s) 301, 311
TauI GCSGC 2 cut(s) 62, 94
Tru1I TTAA 2 cut(s) 290, 300
Tru9I TTAA 2 cut(s) 290, 300
TscAI CASTG 1 cut(s) 116
TseI GCWGC 2 cut(s) 62, 77
TspDTI ATGAA 4 cut(s) 203, 240, 276, 323
TspRI CASTG 1 cut(s) 116
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 31
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.