Rh1DG182200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001209
Physical Location & Seq
Forward (+)
36710467 .. 36710760
294 bp
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UTR
Exon/CDS
Intron
Rh1DG182200.1

Sequence Viewer

Length: 228 bp
ATGGCTTGCTCTTATGTCGTAGCCTTTACAGATTGGGTAAAACCTGCGATTATGTATCTGGATCGGAACGACTGGGATGACGTCGCCACCACCCTCGCCATCCTATTCCCCCTCATATCGCCTTCTAAGACCGCCGTGCAGTGCCACAACAAGATCGAGAAGCTTCAAAAACTGTACCGTTTCGAGAAGCAGCATGCTTCGTCTCGACCCAATCGGTTCTCGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

75

Amino Acids

8.7

Weight (kDa)

9.06

Isoelectric Point (pI)

65.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 23 - 71 9.2e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 77
BseGI GGATG 2 cut(s) 82, 99
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 61, 153
BspACI CCGC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 77
BssMI GATC 2 cut(s) 61, 153
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 174, 179
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 7, 195
BstDEI CTNAG 2 cut(s) 126, 225
BstF5I GGATG 2 cut(s) 82, 99
BstKTI GATC 2 cut(s) 64, 156
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 61, 153
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 82, 99
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 7, 195
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 194
CviJI RGCY 3 cut(s) 5, 23, 163
CviKI_1 RGCY 3 cut(s) 5, 23, 163
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 126, 225
DpnI GATC 2 cut(s) 63, 155
DpnII GATC 2 cut(s) 61, 153
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 1 cut(s) 197
FaiI YATR 4 cut(s) 15, 53, 116, 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 2 cut(s) 86, 89
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 4 cut(s) 59, 157, 184, 204
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 174, 179
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 126, 225
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 61, 153
LpnPI CCDG 3 cut(s) 44, 57, 58
Lsp1109I GCAGC 1 cut(s) 202
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 63, 155
MboI GATC 2 cut(s) 61, 153
MnlI CCTC 2 cut(s) 104, 122
NdeII GATC 2 cut(s) 61, 153
NlaIII CATG 1 cut(s) 197
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 192
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 61, 153
SetI ASST 3 cut(s) 46, 84, 165
SphI GCATGC 1 cut(s) 197
SsiI CCGC 1 cut(s) 132
TaaI ACNGT 2 cut(s) 174, 179
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 156, 183, 205
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 190
TspRI CASTG 1 cut(s) 146
XceI RCATGY 1 cut(s) 197
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.