Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

57143555 .. 57167546

Gene Structure 23992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAGCTTCCATCGCCAGGTTCAACCACACCGACCGCAACCAGATCAACTGGAGATGCCACCACCCCGCTGCCAACAACCACGTCGTTGAGGAGAAAGAAAAGACCAAGAGCCGCGGGTCTGGATACCCATACCCCACCGCCTCTAATAGAGGGATAGGACTGAGGTCAATCCCCACCACCACCCATCACAGCAACAATAGGAAGAAGCGATCCGCACGCCGACCAAATCACCCTACTGCCGCCGCACCACGCACTACCAGCCTCGACTGCGATATCACCATCATTGTCTCCAACCAAACACCCAGCACAACTCGGCGAATGAAGCCTCATAGCCATGCTGGAAAGAGACCAATCAAGAGCATGTGGTTGAAGACTAGTACTTTACCAAAAGAAACCAGAAATATACAGAAAAAAAAAGGTAAAGTTTTCGAGGGGATAACTGTTCCATTTTCAATATTATCTTCTCAATGGCTTTGCGCCAAAAGCAAGACATTCATTACGAAGCCAAAGGTGGCTAAAATACAAAACAAGAATCTTCAGATAACTTCGAATCTTTCTTCACCGGGAAGTAGCTATGGAATCCAACGTCGGGTTGAGCCGCGCTTTTATCTCCGGGAGGCAGACTTCGGGAAAGGAAAAAGAGGAGAAACGGAGCCTCCTCTCCCCTTTACATGGAAGCGGCGAGAGGAATCCAACATAGGCTTGGCCAACGCCATTATCCATGAGAAGGGAAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.92

Weight (kDa)

10.95

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 604
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	708
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	4 cut(s)	18, 592, 675, 730
AgsI	TTSAA	3 cut(s)	25, 373, 456
AhlI	ACTAGT	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	8, 576
AluI	AGCT	2 cut(s)	8, 576
Alw26I	GTCTC	2 cut(s)	295, 343
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	5, 71
AspLEI	GCGC	2 cut(s)	482, 606
AsuC2I	CCSGG	2 cut(s)	567, 617
AsuHPI	GGTGA	3 cut(s)	224, 271, 555
AsuII	TTCGAA	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	17, 58
BccI	CCATC	3 cut(s)	20, 195, 290
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	567, 617
BcoDI	GTCTC	2 cut(s)	295, 343
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	378, 742
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	7 cut(s)	6, 72, 115, 243, 246, 602, 683
BlsI	GCNGC	7 cut(s)	7, 73, 116, 244, 247, 603, 684
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	19, 567, 617
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	3 cut(s)	19, 567, 617
BmsI	GCATC	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	567, 617
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 592, 675, 730
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	18, 592, 675, 730
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	3 cut(s)	107, 651, 660
BseXI	GCAGC	2 cut(s)	17, 58
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	117, 604
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	566, 616
BslI	CCNNNNNNNGG	4 cut(s)	18, 592, 675, 730
BsmAI	GTCTC	2 cut(s)	295, 343
BsnI	GGCC	1 cut(s)	710
Bso31I	GGTCTC	1 cut(s)	343
Bsp119I	TTCGAA	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	45, 212
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	117, 604
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	45, 212
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	115
BstFNI	CGCG	2 cut(s)	117, 604
BstHHI	GCGC	2 cut(s)	482, 606
BstKTI	GATC	2 cut(s)	48, 215
BstMAI	GTCTC	2 cut(s)	295, 343
BstMBI	GATC	2 cut(s)	45, 212
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 261, 270, 325, 486
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	367
BstPAI	GACNNNNGTC	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	17, 565, 615
BstUI	CGCG	2 cut(s)	117, 604
BstV1I	GCAGC	2 cut(s)	17, 58
BstV2I	GAAGAC	1 cut(s)	380
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	710
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	2 cut(s)	482, 606
Cfr42I	CCGCGG	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	4 cut(s)	338, 364, 675, 725
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	47, 214
DpnII	GATC	2 cut(s)	45, 212
EaeI	YGGCCR	1 cut(s)	708
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	4 cut(s)	341, 367, 678, 728
FaiI	YATR	9 cut(s)	133, 333, 339, 365, 407, 579, 676, 701, 726
FatI	CATG	4 cut(s)	337, 363, 674, 724
FauI	CCCGC	2 cut(s)	76, 110
Fnu4HI	GCNGC	7 cut(s)	6, 72, 115, 243, 246, 602, 683
Fsp4HI	GCNGC	7 cut(s)	6, 72, 115, 243, 246, 602, 683
FspBI	CTAG	2 cut(s)	378, 742
GlaI	GCGC	2 cut(s)	481, 605
GluI	GCNGC	7 cut(s)	6, 72, 115, 243, 246, 602, 683
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	710
HapII	CCGG	2 cut(s)	566, 616
HhaI	GCGC	2 cut(s)	482, 606
Hin1II	CATG	4 cut(s)	341, 367, 678, 728
Hin6I	GCGC	2 cut(s)	480, 604
HinP1I	GCGC	2 cut(s)	480, 604
HinfI	GANTC	5 cut(s)	535, 553, 582, 692, 738
HpaII	CCGG	2 cut(s)	566, 616
HphI	GGTGA	3 cut(s)	224, 271, 555
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	3 cut(s)	123, 358, 631
Hpy99I	CGWCG	2 cut(s)	89, 594
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	84, 589
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 261, 270, 325, 486
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	84, 589
Hsp92II	CATG	4 cut(s)	341, 367, 678, 728
HspAI	GCGC	2 cut(s)	480, 604
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	45, 212
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	17, 58
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	378, 742
MaeII	ACGT	2 cut(s)	84, 589
MalI	GATC	2 cut(s)	47, 214
MboI	GATC	2 cut(s)	45, 212
MboII	GAAGA	5 cut(s)	217, 385, 456, 530, 552
MlsI	TGGCCA	1 cut(s)	710
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	732
MmeI	TCCRAC	3 cut(s)	318, 610, 720
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	2 cut(s)	71, 117
MspI	CCGG	2 cut(s)	566, 616
MspR9I	CCNGG	3 cut(s)	19, 567, 617
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	2 cut(s)	117, 604
MwoI	GCNNNNNNNGC	5 cut(s)	14, 261, 270, 325, 486
NciI	CCSGG	2 cut(s)	567, 617
NdeII	GATC	2 cut(s)	45, 212
NlaIII	CATG	4 cut(s)	341, 367, 678, 728
NlaIV	GGNNCC	1 cut(s)	657
NmeAIII	GCCGAG	1 cut(s)	295
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	551
PfeI	GAWTC	4 cut(s)	535, 553, 582, 692
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	7 cut(s)	7, 73, 116, 244, 247, 603, 684
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	657
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	118
SatI	GCNGC	7 cut(s)	6, 72, 115, 243, 246, 602, 683
Sau3AI	GATC	2 cut(s)	45, 212
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	3 cut(s)	19, 567, 617
SetI	ASST	8 cut(s)	10, 23, 87, 170, 424, 516, 578, 592
SfaNI	GCATC	1 cut(s)	47
Sfr303I	CCGCGG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	551
SgrBI	CCGCGG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	377
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	2 cut(s)	378, 742
StyD4I	CCNGG	3 cut(s)	17, 565, 615
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	87, 592
TaqI	TCGA	3 cut(s)	267, 432, 551
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	5 cut(s)	117, 245, 248, 604, 685
TfiI	GAWTC	4 cut(s)	535, 553, 582, 692
TseI	GCWGC	2 cut(s)	5, 71
TspDTI	ATGAA	2 cut(s)	338, 487
TspGWI	ACGGA	1 cut(s)	668
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XspI	CTAG	2 cut(s)	378, 742
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.