Rh7DG231100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001209
Physical Location & Seq
Reverse (-)
22888547 .. 22889404
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG231100.1

Sequence Viewer

Length: 858 bp
ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTATGGAGGAATTGGAAGGCGAGTCTGGTAAGAAGCCGATCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTTTCTTCGAAAATTCGGAGGAGTGGAGTCTAGTGGTGTTGGTGTTAACGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCGGTTGAAGAGATGGTTTCTTCGATTCAGTTGCTTGGAGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAAATGAAGCAAACTCAGGTTATTATGGAATCGCAGCAGCAGATAGTGAATGCTTGTGTCAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATGAAGGCCTTGTCGACTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

285

Amino Acids

31.85

Weight (kDa)

9.74

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 14 - 104 1.8e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 2 cut(s) 231, 475
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 845
AccII CGCG 1 cut(s) 194
AclWI GGATC 2 cut(s) 331, 614
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 4 cut(s) 364, 398, 469, 536
AcyI GRCGYC 2 cut(s) 138, 476
AfaI GTAC 2 cut(s) 233, 411
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 82, 505, 629
AhdI GACNNNNNGTC 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 355, 387
AluBI AGCT 3 cut(s) 220, 386, 519
AluI AGCT 3 cut(s) 220, 386, 519
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 331, 614
AoxI GGCC 5 cut(s) 57, 103, 252, 345, 837
ApeKI GCWGC 3 cut(s) 247, 766, 769
ApoI RAATTY 4 cut(s) 364, 398, 469, 536
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 2 cut(s) 196, 478
AspS9I GGNCC 5 cut(s) 45, 58, 93, 252, 346
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 368, 443
AsuII TTCGAA 1 cut(s) 532
AvaII GGWCC 2 cut(s) 45, 93
BanI GGYRCC 2 cut(s) 231, 475
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 259, 778, 781
BccI CCATC 3 cut(s) 628, 685, 691
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 4 cut(s) 375, 555, 702, 856
BfoI RGCGCY 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 45, 93
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 5 cut(s) 45, 58, 93, 252, 346
BmiI GGNNCC 2 cut(s) 233, 477
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 424, 708
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 2 cut(s) 138, 476
BsaJI CCNNGG 2 cut(s) 100, 281
BsaWI WCCGGW 1 cut(s) 622
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 100, 281
BseGI GGATG 2 cut(s) 139, 400
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 534, 761
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 558, 616
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 259, 778, 781
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 2 cut(s) 106, 271
BshFI GGCC 5 cut(s) 59, 105, 254, 347, 839
BshNI GGYRCC 2 cut(s) 231, 475
BsiEI CGRYCG 2 cut(s) 106, 271
BsiSI CCGG 2 cut(s) 267, 623
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 5 cut(s) 59, 105, 254, 347, 839
Bsp119I TTCGAA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 210, 336, 619
BspANI GGCC 5 cut(s) 59, 105, 254, 347, 839
BspCNI CTCAG 2 cut(s) 533, 760
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 233, 477
BspPI GGATC 2 cut(s) 331, 614
BspT104I TTCGAA 1 cut(s) 532
BspT107I GGYRCC 2 cut(s) 231, 475
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 100, 281
BssMI GATC 3 cut(s) 210, 336, 619
BssNI GRCGYC 2 cut(s) 138, 476
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 624, 677, 818
BstACI GRCGYC 2 cut(s) 138, 476
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 492, 520, 747
BstF5I GGATG 2 cut(s) 139, 400
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 196, 478
BstKTI GATC 3 cut(s) 213, 339, 622
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 210, 336, 619
BstMCI CGRYCG 2 cut(s) 106, 271
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 265
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 259, 778, 781
BstV2I GAAGAC 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 5 cut(s) 59, 105, 254, 347, 839
BtsCI GGATG 2 cut(s) 139, 400
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 203, 799
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 196, 478
Cfr13I GGNCC 5 cut(s) 45, 58, 93, 252, 346
Csp6I GTAC 2 cut(s) 232, 410
CviAII CATG 1 cut(s) 730
CviQI GTAC 2 cut(s) 232, 410
DdeI CTNAG 3 cut(s) 492, 520, 747
DinI GGCGCC 1 cut(s) 477
DpnI GATC 3 cut(s) 212, 338, 621
DpnII GATC 3 cut(s) 210, 336, 619
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 624, 677, 818
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 3 cut(s) 624, 677, 818
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 281
Eco147I AGGCCT 1 cut(s) 839
Eco47I GGWCC 2 cut(s) 45, 93
Eco52I CGGCCG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 281
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 733
FaiI YATR 6 cut(s) 302, 465, 669, 671, 731, 758
FatI CATG 1 cut(s) 729
FauI CCCGC 3 cut(s) 26, 39, 243
FblI GTMKAC 1 cut(s) 845
FokI GGATG 2 cut(s) 146, 407
FspBI CTAG 4 cut(s) 375, 555, 702, 856
GlaI GCGC 2 cut(s) 195, 477
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 5 cut(s) 59, 105, 254, 347, 839
HapII CCGG 2 cut(s) 267, 623
HhaI GCGC 2 cut(s) 196, 478
Hin1I GRCGYC 2 cut(s) 138, 476
Hin1II CATG 1 cut(s) 733
Hin6I GCGC 2 cut(s) 194, 476
HinP1I GCGC 2 cut(s) 194, 476
HincII GTYRAC 2 cut(s) 571, 846
HindII GTYRAC 2 cut(s) 571, 846
HinfI GANTC 5 cut(s) 320, 551, 646, 761, 851
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 2 cut(s) 267, 623
HphI GGTGA 2 cut(s) 368, 443
Hpy166II GTNNAC 2 cut(s) 571, 846
Hpy188I TCNGA 2 cut(s) 241, 542
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 571, 846
Hpy99I CGWCG 3 cut(s) 53, 56, 143
HpyAV CCTTC 3 cut(s) 308, 667, 829
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 721, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 492, 520, 747
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 138, 476
Hsp92II CATG 1 cut(s) 733
HspAI GCGC 2 cut(s) 194, 476
KasI GGCGCC 1 cut(s) 475
KpnI GGTACC 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 3 cut(s) 210, 336, 619
LmnI GCTCC 2 cut(s) 225, 242
LpnPI CCDG 9 cut(s) 28, 115, 280, 309, 423, 459, 507, 636, 734
Lsp1109I GCAGC 3 cut(s) 259, 778, 781
LweI GCATC 2 cut(s) 424, 708
MaeI CTAG 4 cut(s) 375, 555, 702, 856
MaeII ACGT 1 cut(s) 138
MalI GATC 3 cut(s) 212, 338, 621
MbiI CCGCTC 1 cut(s) 237
MboI GATC 3 cut(s) 210, 336, 619
MluCI AATT 6 cut(s) 161, 308, 364, 398, 469, 536
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 2 cut(s) 329, 560
MmeI TCCRAC 1 cut(s) 783
MseI TTAA 2 cut(s) 486, 570
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 2 cut(s) 37, 250
MspI CCGG 2 cut(s) 267, 623
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 787
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 476
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 210, 336, 619
NlaIII CATG 1 cut(s) 733
NlaIV GGNNCC 2 cut(s) 233, 477
NmeAIII GCCGAG 1 cut(s) 81
NspV TTCGAA 1 cut(s) 532
PceI AGGCCT 1 cut(s) 839
PctI GAATGC 1 cut(s) 787
PfeI GAWTC 3 cut(s) 646, 761, 851
PflFI GACNNNGTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 2 cut(s) 328, 559
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 2 cut(s) 328, 559
PspN4I GGNNCC 2 cut(s) 233, 477
PspPI GGNCC 5 cut(s) 45, 58, 93, 252, 346
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 2 cut(s) 233, 411
RsaNI GTAC 2 cut(s) 232, 410
RseI CAYNNNNRTG 1 cut(s) 734
SalI GTCGAC 1 cut(s) 844
SaqAI TTAA 2 cut(s) 486, 570
Sau3AI GATC 3 cut(s) 210, 336, 619
Sau96I GGNCC 5 cut(s) 45, 58, 93, 252, 346
SchI GAGTC 2 cut(s) 329, 560
ScrFI CCNGG 1 cut(s) 267
SfaNI GCATC 2 cut(s) 424, 708
SfoI GGCGCC 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 2 cut(s) 45, 93
SmiMI CAYNNNNRTG 1 cut(s) 734
Sse9I AATT 6 cut(s) 161, 308, 364, 398, 469, 536
SseBI AGGCCT 1 cut(s) 839
SspDI GGCGCC 1 cut(s) 475
SspMI CTAG 4 cut(s) 375, 555, 702, 856
StuI AGGCCT 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 141
TaqI TCGA 6 cut(s) 213, 257, 368, 532, 644, 845
TaqII GACCGA 1 cut(s) 62
TasI AATT 6 cut(s) 161, 308, 364, 398, 469, 536
TauI GCSGC 7 cut(s) 24, 27, 37, 108, 146, 158, 194
TfiI GAWTC 3 cut(s) 646, 761, 851
Tru1I TTAA 2 cut(s) 486, 570
Tru9I TTAA 2 cut(s) 486, 570
TscAI CASTG 2 cut(s) 203, 799
TseI GCWGC 3 cut(s) 247, 766, 769
TspDTI ATGAA 6 cut(s) 411, 512, 528, 686, 752, 848
TspGWI ACGGA 2 cut(s) 64, 427
TspRI CASTG 2 cut(s) 203, 799
Tth111I GACNNNGTC 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 45, 93
XapI RAATTY 4 cut(s) 364, 398, 469, 536
XmiI GTMKAC 1 cut(s) 845
XspI CTAG 4 cut(s) 375, 555, 702, 856
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.