Rh7AG223300
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001209
Physical Location & Seq
Reverse (-)
20965373 .. 20966359
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG223300.1

Sequence Viewer

Length: 987 bp
ATGTCCACCGTCGTCACCACCACCGCCCTCCCCACCAAACCCCGCCGGGTCCCACCCCCCTGCTGGACCCAGGACGAGGCCCGCTCCCTCATCCTCGCCTACCGCGACCGCTGGTTCGCTCTCCGCCGCACCAATCTCAAATCCGCCGACTGGGACCACGTCGCCGCCGCCACCGCCGCCGAGGCTCCCTCCTCCCCGCCCAAGACCGCGCTGCAGTGCCGTCATAAGATGGAGAAGCTCCGCAAGCGGTACCGCGCTGAGAAGCAGCGGGCTTCTGGGTACCCGGGTCGGTTTTCCTCGTCGTGGGCTTTGTTCCATCTCATGGATGAAATGGAGTCCGGCCCGGATCCGGGATTGGATAGTGGTGGTGAGTTTGGAGGTGGGTTTTCGCTAAAGGCTCGTAATTTGGTGAAATTTAATGGAAATGTTGGTAGGGATTTTAGTCCTGATGTTGATGAGAATTCTAGCTTTTATTCTGAAGGTGAAGATTATGTTAATCAAGGGTTTGGGCCAAAGAGTAATGGCAAGACTGATGTGAATCTTAAGCACAGTTTCAGGAAACATGGGGACTATGGAGTTGATATTAGAAGTGATAGGGATTTTGTACCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGCAAAGCGCAATGTGCGTTTTAAGGAGTTTGATGGGTATTCTTGTTTATCAGGATCAAAGTTTGTTGAGAAGAGTAGTGTTGTTGGGATTAAGAGAGATATGGATCCTGTTGAAGACTTGGCTTCATCGATTATGCGGTTGGGAGAAGGGTTTGTGAGGATGGAGAAAATGAAGATGGAAATGACAATTGAGATTGAGAAGATGCGAATGGAGATGGAGCTGAAGCGTAATGAGGCCATGATCGAATCCCACCAGCAGATTGTGGATGCTTTTGTGAATGCATTATTGGAAAGGAAGAGGAAAAAGAAGGCCAAGGTGGAGTCTTCCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

328

Amino Acids

36.99

Weight (kDa)

9.38

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 20 - 111 1.5e-16 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 42 - 108 1.8e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 616
Acc65I GGTACC 2 cut(s) 249, 279
AccB1I GGYRCC 2 cut(s) 249, 279
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 3 cut(s) 105, 209, 255
AclWI GGATC 5 cut(s) 341, 354, 712, 749, 762
AcoI YGGCCR 1 cut(s) 620
AcsI RAATTY 2 cut(s) 413, 460
AcuI CTGAAG 2 cut(s) 498, 893
AfaI GTAC 3 cut(s) 251, 281, 606
AfiI CCNNNNNNNGG 8 cut(s) 63, 76, 150, 303, 322, 349, 350, 618
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 1 cut(s) 764
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 3 cut(s) 238, 468, 871
AluI AGCT 3 cut(s) 238, 468, 871
AlwI GGATC 5 cut(s) 341, 354, 712, 749, 762
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 6 cut(s) 78, 340, 509, 620, 885, 960
ApeKI GCWGC 2 cut(s) 211, 265
ApoI RAATTY 2 cut(s) 413, 460
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp718I GGTACC 2 cut(s) 249, 279
AspLEI GCGC 3 cut(s) 211, 257, 660
AspS9I GGNCC 6 cut(s) 49, 66, 79, 154, 341, 509
AsuC2I CCSGG 5 cut(s) 47, 284, 285, 344, 351
AsuHPI GGTGA 4 cut(s) 7, 380, 421, 494
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 3 cut(s) 49, 66, 154
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BamHI GGATCC 2 cut(s) 346, 754
BanI GGYRCC 2 cut(s) 249, 279
BbsI GAAGAC 2 cut(s) 771, 966
BbvI GCAGC 2 cut(s) 198, 277
BccI CCATC 7 cut(s) 223, 324, 638, 677, 805, 820, 859
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 5 cut(s) 47, 284, 285, 344, 351
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 212
BfrI CTTAAG 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 616
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 6 cut(s) 127, 165, 168, 177, 212, 266
BlsI GCNGC 6 cut(s) 128, 166, 169, 178, 213, 267
Bme1390I CCNGG 6 cut(s) 47, 71, 284, 285, 344, 351
Bme18I GGWCC 3 cut(s) 49, 66, 154
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 6 cut(s) 49, 66, 79, 154, 341, 509
BmiI GGNNCC 9 cut(s) 50, 51, 68, 155, 186, 251, 281, 348, 756
BmrFI CCNGG 6 cut(s) 47, 71, 284, 285, 344, 351
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 843, 907
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 771, 966
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 173, 205
BpuMI CCSGG 5 cut(s) 47, 284, 285, 344, 351
Bsa29I ATCGAT 1 cut(s) 779
BsaBI GATNNNNATC 2 cut(s) 537, 753
BsaJI CCNNGG 4 cut(s) 69, 180, 283, 963
Bsc4I CCNNNNNNNGG 8 cut(s) 63, 76, 150, 303, 322, 349, 350, 618
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 667
Bse8I GATNNNNATC 2 cut(s) 537, 753
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 779
BseDI CCNNGG 4 cut(s) 69, 180, 283, 963
BseGI GGATG 4 cut(s) 90, 331, 816, 922
BseJI GATNNNNATC 2 cut(s) 537, 753
BseLI CCNNNNNNNGG 8 cut(s) 63, 76, 150, 303, 322, 349, 350, 618
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 198, 277
Bsh1236I CGCG 3 cut(s) 105, 209, 255
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 6 cut(s) 80, 342, 511, 622, 887, 962
BshNI GGYRCC 2 cut(s) 249, 279
BshVI ATCGAT 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 6 cut(s) 46, 284, 339, 344, 350, 612
BslFI GGGAC 3 cut(s) 35, 167, 581
BslI CCNNNNNNNGG 8 cut(s) 63, 76, 150, 303, 322, 349, 350, 618
BsmFI GGGAC 3 cut(s) 35, 167, 581
BsmI GAATGC 2 cut(s) 655, 934
BsnI GGCC 6 cut(s) 80, 342, 511, 622, 887, 962
BsoBI CYCGRG 1 cut(s) 283
Bsp143I GATC 4 cut(s) 346, 704, 754, 891
BspANI GGCC 6 cut(s) 80, 342, 511, 622, 887, 962
BspCNI CTCAG 1 cut(s) 250
BspDI ATCGAT 1 cut(s) 779
BspFNI CGCG 3 cut(s) 105, 209, 255
BspLI GGNNCC 9 cut(s) 50, 51, 68, 155, 186, 251, 281, 348, 756
BspMAI CTGCAG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 5 cut(s) 341, 354, 712, 749, 762
BspT107I GGYRCC 2 cut(s) 249, 279
BspTI CTTAAG 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 611
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 4 cut(s) 69, 180, 283, 963
BssMI GATC 4 cut(s) 346, 704, 754, 891
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 10, 551
Bst6I CTCTTC 2 cut(s) 716, 941
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 82, 245, 270
BstDEI CTNAG 2 cut(s) 258, 984
BstF5I GGATG 4 cut(s) 90, 331, 816, 922
BstFNI CGCG 3 cut(s) 105, 209, 255
BstHHI GCGC 3 cut(s) 211, 257, 660
BstKTI GATC 4 cut(s) 349, 707, 757, 894
BstMBI GATC 4 cut(s) 346, 704, 754, 891
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 5 cut(s) 173, 176, 182, 244, 664
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 6 cut(s) 45, 69, 282, 283, 342, 349
BstSFI CTRYAG 1 cut(s) 212
BstUI CGCG 3 cut(s) 105, 209, 255
BstV1I GCAGC 2 cut(s) 198, 277
BstV2I GAAGAC 2 cut(s) 771, 966
BstX2I RGATCY 2 cut(s) 346, 754
BstYI RGATCY 2 cut(s) 346, 754
Bsu15I ATCGAT 1 cut(s) 779
BsuRI GGCC 6 cut(s) 80, 342, 511, 622, 887, 962
BsuTUI ATCGAT 1 cut(s) 779
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 4 cut(s) 90, 331, 816, 922
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 3 cut(s) 82, 245, 270
CfoI GCGC 3 cut(s) 211, 257, 660
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 6 cut(s) 49, 66, 79, 154, 341, 509
Cfr9I CCCGGG 1 cut(s) 283
ClaI ATCGAT 1 cut(s) 779
Csp6I GTAC 3 cut(s) 250, 280, 605
CviAII CATG 4 cut(s) 322, 563, 889, 980
CviQI GTAC 3 cut(s) 250, 280, 605
DdeI CTNAG 2 cut(s) 258, 984
DpnI GATC 4 cut(s) 348, 706, 756, 893
DpnII GATC 4 cut(s) 346, 704, 754, 891
EaeI YGGCCR 1 cut(s) 620
Eam1104I CTCTTC 2 cut(s) 716, 941
EarI CTCTTC 2 cut(s) 716, 941
EciI GGCGGA 2 cut(s) 113, 133
Eco130I CCWWGG 1 cut(s) 963
Eco47I GGWCC 3 cut(s) 49, 66, 154
Eco57I CTGAAG 2 cut(s) 498, 893
Eco88I CYCGRG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 963
EcoT22I ATGCAT 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 963
FaeI CATG 4 cut(s) 325, 566, 892, 983
FaiI YATR 9 cut(s) 225, 323, 492, 564, 573, 752, 785, 890, 981
FaqI GGGAC 3 cut(s) 35, 167, 581
FatI CATG 4 cut(s) 321, 562, 888, 979
FauI CCCGC 4 cut(s) 50, 89, 204, 261
Fnu4HI GCNGC 6 cut(s) 127, 165, 168, 177, 212, 266
FokI GGATG 4 cut(s) 77, 338, 823, 929
Fsp4HI GCNGC 6 cut(s) 127, 165, 168, 177, 212, 266
FspBI CTAG 1 cut(s) 465
GlaI GCGC 3 cut(s) 210, 256, 659
GluI GCNGC 6 cut(s) 127, 165, 168, 177, 212, 266
HaeIII GGCC 6 cut(s) 80, 342, 511, 622, 887, 962
HapII CCGG 6 cut(s) 46, 284, 339, 344, 350, 612
HhaI GCGC 3 cut(s) 211, 257, 660
Hin1II CATG 4 cut(s) 325, 566, 892, 983
Hin6I GCGC 3 cut(s) 209, 255, 658
HinP1I GCGC 3 cut(s) 209, 255, 658
HinfI GANTC 4 cut(s) 335, 538, 896, 971
HpaII CCGG 6 cut(s) 46, 284, 339, 344, 350, 612
HphI GGTGA 4 cut(s) 7, 380, 421, 494
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 3 cut(s) 446, 556, 702
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 14, 164, 304
HpyAV CCTTC 3 cut(s) 473, 791, 952
HpyCH4III ACNGT 2 cut(s) 10, 551
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 214, 653, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 176, 182, 244, 664
HpyF3I CTNAG 2 cut(s) 258, 984
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 325, 566, 892, 983
HspAI GCGC 3 cut(s) 209, 255, 658
KflI GGGWCCC 1 cut(s) 49
KpnI GGTACC 2 cut(s) 253, 283
Kzo9I GATC 4 cut(s) 346, 704, 754, 891
LmnI GCTCC 4 cut(s) 89, 190, 243, 868
Lsp1109I GCAGC 2 cut(s) 198, 277
LweI GCATC 2 cut(s) 843, 907
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 348, 706, 756, 893
MbiI CCGCTC 1 cut(s) 84
MboI GATC 4 cut(s) 346, 704, 754, 891
MboII GAAGA 7 cut(s) 497, 733, 776, 835, 862, 958, 966
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 2 cut(s) 346, 754
MluCI AATT 4 cut(s) 403, 413, 460, 837
MlyI GAGTC 2 cut(s) 344, 980
Mph1103I ATGCAT 1 cut(s) 934
MseI TTAA 5 cut(s) 417, 495, 543, 672, 741
MspA1I CMGCKG 2 cut(s) 111, 268
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 6 cut(s) 46, 284, 339, 344, 350, 612
MspR9I CCNGG 6 cut(s) 47, 71, 284, 285, 344, 351
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 2 cut(s) 655, 934
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 3 cut(s) 105, 209, 255
MwoI GCNNNNNNNGC 5 cut(s) 173, 176, 182, 244, 664
NciI CCSGG 5 cut(s) 47, 284, 285, 344, 351
NdeII GATC 4 cut(s) 346, 704, 754, 891
NlaIII CATG 4 cut(s) 325, 566, 892, 983
NlaIV GGNNCC 9 cut(s) 50, 51, 68, 155, 186, 251, 281, 348, 756
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 934
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 2 cut(s) 655, 934
PfeI GAWTC 2 cut(s) 538, 896
PflFI GACNNNGTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 6 cut(s) 128, 166, 169, 178, 213, 267
PleI GAGTC 2 cut(s) 343, 979
PpsI GAGTC 2 cut(s) 343, 979
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 9 cut(s) 50, 51, 68, 155, 186, 251, 281, 348, 756
PspPI GGNCC 6 cut(s) 49, 66, 79, 154, 341, 509
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 216
PsuI RGATCY 2 cut(s) 346, 754
PsyI GACNNNGTC 1 cut(s) 158
RsaI GTAC 3 cut(s) 251, 281, 606
RsaNI GTAC 3 cut(s) 250, 280, 605
SaqAI TTAA 5 cut(s) 417, 495, 543, 672, 741
SatI GCNGC 6 cut(s) 127, 165, 168, 177, 212, 266
Sau3AI GATC 4 cut(s) 346, 704, 754, 891
Sau96I GGNCC 6 cut(s) 49, 66, 79, 154, 341, 509
SchI GAGTC 2 cut(s) 344, 980
ScrFI CCNGG 6 cut(s) 47, 71, 284, 285, 344, 351
SetI ASST 8 cut(s) 162, 240, 382, 470, 484, 610, 873, 969
SfaNI GCATC 2 cut(s) 843, 907
SfcI CTRYAG 1 cut(s) 212
SinI GGWCC 3 cut(s) 49, 66, 154
SmaI CCCGGG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 4 cut(s) 403, 413, 460, 837
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 6 cut(s) 45, 69, 282, 283, 342, 349
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 2 cut(s) 10, 551
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 779, 894
TasI AATT 4 cut(s) 403, 413, 460, 837
TauI GCSGC 4 cut(s) 129, 167, 170, 179
TfiI GAWTC 2 cut(s) 538, 896
Tru1I TTAA 5 cut(s) 417, 495, 543, 672, 741
Tru9I TTAA 5 cut(s) 417, 495, 543, 672, 741
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 211, 265
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 342, 765, 836
TspMI CCCGGG 1 cut(s) 283
TspRI CASTG 1 cut(s) 221
Tth111I GACNNNGTC 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 322
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 3 cut(s) 49, 66, 154
XapI RAATTY 2 cut(s) 413, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 283
XspI CTAG 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.