Rroxscaffold_1G00023180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001209
Physical Location & Seq
Forward (+)
28661968 .. 28666435
4468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023180.1

Sequence Viewer

Length: 219 bp
ATGGTGAAGCAGATTATGTATCTAGATCGAAACGACCGGGATGACGTCGCCACCACTCTCACCGCCCAATTCCCCCTCGTCTCGCCATCCAAGACCGTCCGGGGAGAAGAAGATAGAGAGAGAGAGCTGGGTTTGGTTTTAGAAGAAGATGATGGAGATGAACGAGAGGAGAGAGAACCCGGAAGAAGAAAAGGGTGTCAATCCATTAAGACTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.34

Weight (kDa)

4.85

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AciI CCGC 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 45
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 85
AsuC2I CCSGG 3 cut(s) 38, 101, 180
AsuHPI GGTGA 2 cut(s) 16, 52
BccI CCATC 2 cut(s) 94, 146
BcnI CCSGG 3 cut(s) 38, 101, 180
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 23
Bme1390I CCNGG 3 cut(s) 38, 101, 180
BmrFI CCNGG 3 cut(s) 38, 101, 180
BpuMI CCSGG 3 cut(s) 38, 101, 180
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 46, 86
BseRI GAGGAG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 3 cut(s) 37, 100, 180
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 46, 86
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 36, 99, 178
BtsCI GGATG 2 cut(s) 46, 86
CviJI RGCY 1 cut(s) 127
CviKI_1 RGCY 1 cut(s) 127
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 85
FaiI YATR 1 cut(s) 17
FokI GGATG 2 cut(s) 53, 73
FspBI CTAG 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 131
HapII CCGG 3 cut(s) 37, 100, 180
Hin1I GRCGYC 1 cut(s) 45
HpaII CCGG 3 cut(s) 37, 100, 180
HphI GGTGA 2 cut(s) 16, 52
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 50, 113, 113, 193
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 6 cut(s) 119, 122, 155, 158, 195, 198
MluCI AATT 1 cut(s) 68
MnlI CCTC 2 cut(s) 86, 160
MseI TTAA 1 cut(s) 207
MspI CCGG 3 cut(s) 37, 100, 180
MspR9I CCNGG 3 cut(s) 38, 101, 180
NciI CCSGG 3 cut(s) 38, 101, 180
NdeII GATC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 38, 101, 180
SetI ASST 2 cut(s) 48, 129
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 36, 99, 178
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 28
TasI AATT 1 cut(s) 68
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 22
XspI CTAG 1 cut(s) 23
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.