RchiOBHm_Chr3g0463421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001209
Physical Location & Seq
Forward (+)
10768223 .. 10771002
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42974

Sequence Viewer

Length: 516 bp
ATGCCACCACAGAGCTTATCATTTCCAAGAACTGAGACTCCACTTACGTTCAGAAAGATTCCTTCTTTAGGCAATTGTAACGTCCCGAACGTAAAGTTACCAGTTTACGAGTCTTTCGATGGCGATTTGGCTGGAAGAGCTCGATTTGGAGCTGTGAAGGTTACTGTAGAAAATCGGGATTTCAGTCGATTTCCGGCGATTCCGGCCGTCTCCGGCCACCAAATTGGCGTCGAAGATGGTGCTGCCAAATTTTGGTGGCCATCGGAGGTGGTTGCCGCCGGCGCGTGGGGCCCACGCGCTGCCACTGTTGGTGGCCCGTGGAGGCGTCCGTCGGATTTCCCTCGGCGATATTCCGAGCTATTGCTCGATGAAGGAAGTCGTATGCGTGATCGCCTAAATAGTACTGTGAAGTATTTGATTTTATGTTTTCGAGGATGCTTTCGAGGATTTATTGAGATATTGAGGTTTGATTTAGGTGGCTCCAGGAGAATAAGGATGAATGATTTAGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

9.83

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 252
AccII CGCG 2 cut(s) 284, 297
AciI CCGC 1 cut(s) 276
AcoI YGGCCR 3 cut(s) 204, 214, 257
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 2 cut(s) 228, 325
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 3 cut(s) 68, 252, 285
AjnI CCWGG 1 cut(s) 482
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AluBI AGCT 4 cut(s) 15, 140, 152, 358
AluI AGCT 4 cut(s) 15, 140, 152, 358
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 2 cut(s) 29, 214
AoxI GGCC 5 cut(s) 204, 214, 257, 289, 313
ApaI GGGCCC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 242, 299
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 2 cut(s) 284, 299
AspS9I GGNCC 3 cut(s) 289, 290, 314
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 259
BanII GRGCYC 2 cut(s) 142, 293
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 229, 286
BccI CCATC 3 cut(s) 113, 230, 268
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 484
BcoDI GTCTC 2 cut(s) 29, 214
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 3 cut(s) 243, 276, 300
BlsI GCNGC 3 cut(s) 244, 277, 301
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 484
BmgT120I GGNCC 3 cut(s) 289, 290, 314
BmiI GGNNCC 3 cut(s) 290, 291, 481
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 466
BsaHI GRCGYC 2 cut(s) 228, 325
BsaJI CCNNGG 2 cut(s) 317, 341
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 252, 285
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 317, 341
BseGI GGATG 2 cut(s) 440, 501
BseLI CCNNNNNNNGG 3 cut(s) 68, 252, 285
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 293
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 229, 286
Bsh1236I CGCG 2 cut(s) 284, 297
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 206, 216, 259, 291, 315
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 4 cut(s) 194, 203, 213, 279
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 68, 252, 285
BsmAI GTCTC 2 cut(s) 29, 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 5 cut(s) 206, 216, 259, 291, 315
Bsp120I GGGCCC 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 142, 293
Bsp143I GATC 1 cut(s) 388
BspACI CCGC 1 cut(s) 276
BspANI GGCC 5 cut(s) 206, 216, 259, 291, 315
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 2 cut(s) 284, 297
BspLI GGNNCC 3 cut(s) 290, 291, 481
BspQI GCTCTTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 317, 341
BssMI GATC 1 cut(s) 388
BssNI GRCGYC 2 cut(s) 228, 325
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 3 cut(s) 166, 307, 406
Bst6I CTCTTC 1 cut(s) 130
BstACI GRCGYC 2 cut(s) 228, 325
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 440, 501
BstFNI CGCG 2 cut(s) 284, 297
BstHHI GCGC 2 cut(s) 284, 299
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 2 cut(s) 29, 214
BstMBI GATC 1 cut(s) 388
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 137, 203, 281, 288
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 2 cut(s) 284, 297
BstV1I GCAGC 2 cut(s) 229, 286
BstXI CCANNNNNNTGG 1 cut(s) 224
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 5 cut(s) 206, 216, 259, 291, 315
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 440, 501
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 2 cut(s) 284, 299
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 289, 290, 314
CseI GACGC 2 cut(s) 217, 314
Csp6I GTAC 1 cut(s) 402
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
EaeI YGGCCR 3 cut(s) 204, 214, 257
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 142, 293
Eco52I CGGCCG 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 482
EcoT38I GRGCYC 2 cut(s) 142, 293
Esp3I CGTCTC 1 cut(s) 214
FaiI YATR 2 cut(s) 383, 424
FaqI GGGAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 243, 276, 300
FokI GGATG 2 cut(s) 447, 508
FriOI GRGCYC 2 cut(s) 142, 293
Fsp4HI GCNGC 3 cut(s) 243, 276, 300
GlaI GCGC 2 cut(s) 283, 298
GluI GCNGC 3 cut(s) 243, 276, 300
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 5 cut(s) 206, 216, 259, 291, 315
HapII CCGG 4 cut(s) 194, 203, 213, 279
HgaI GACGC 2 cut(s) 217, 314
HhaI GCGC 2 cut(s) 284, 299
Hin1I GRCGYC 2 cut(s) 228, 325
Hin6I GCGC 2 cut(s) 282, 297
HinP1I GCGC 2 cut(s) 282, 297
HinfI GANTC 4 cut(s) 37, 58, 110, 199
HpaII CCGG 4 cut(s) 194, 203, 213, 279
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 53, 265, 334, 355
Hpy188III TCNNGA 2 cut(s) 85, 176
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 233, 334
HpyAV CCTTC 3 cut(s) 72, 151, 365
HpyCH4III ACNGT 3 cut(s) 166, 307, 406
HpyCH4IV ACGT 3 cut(s) 47, 81, 90
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 203, 281, 288
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 3 cut(s) 47, 81, 90
Hsp92I GRCGYC 2 cut(s) 228, 325
HspAI GCGC 2 cut(s) 282, 297
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 1 cut(s) 388
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 149, 485
LpnPI CCDG 8 cut(s) 114, 117, 207, 216, 226, 292, 469, 496
Lsp1109I GCAGC 2 cut(s) 229, 286
LweI GCATC 1 cut(s) 425
MaeII ACGT 3 cut(s) 47, 81, 90
MaeIII GTNAC 3 cut(s) 77, 96, 160
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 147, 245
MfeI CAATTG 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 142, 293
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 3 cut(s) 73, 222, 248
MluNI TGGCCA 1 cut(s) 259
MlyI GAGTC 2 cut(s) 31, 119
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 259, 315, 351, 425, 437, 456
Mox20I TGGCCA 1 cut(s) 259
MreI CGCCGGCG 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 278
MscI TGGCCA 1 cut(s) 259
Msp20I TGGCCA 1 cut(s) 259
MspI CCGG 4 cut(s) 194, 203, 213, 279
MspR9I CCNGG 1 cut(s) 484
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 2 cut(s) 284, 297
MwoI GCNNNNNNNGC 4 cut(s) 137, 203, 281, 288
NaeI GCCGGC 1 cut(s) 280
NdeII GATC 1 cut(s) 388
NgoMIV GCCGGC 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 290, 291, 481
NmeAIII GCCGAG 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 114
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 58, 199
PflMI CCANNNNNTGG 1 cut(s) 252
PfoI TCCNGGA 1 cut(s) 482
PkrI GCNGC 3 cut(s) 244, 277, 301
PleI GAGTC 2 cut(s) 31, 118
PpsI GAGTC 2 cut(s) 31, 118
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 3 cut(s) 290, 291, 481
PspOMI GGGCCC 1 cut(s) 289
PspPI GGNCC 3 cut(s) 289, 290, 314
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SacI GAGCTC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 130
SatI GCNGC 3 cut(s) 243, 276, 300
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 3 cut(s) 289, 290, 314
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 2 cut(s) 31, 119
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 2 cut(s) 142, 293
SfaNI GCATC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 165
SgrAI CRCCGGYG 1 cut(s) 278
Sse9I AATT 3 cut(s) 73, 222, 248
SsiI CCGC 1 cut(s) 276
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 3 cut(s) 166, 307, 406
TaiI ACGT 3 cut(s) 50, 84, 93
TaqI TCGA 7 cut(s) 117, 142, 187, 231, 366, 430, 442
TasI AATT 3 cut(s) 73, 222, 248
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 2 cut(s) 58, 199
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 242, 299
TspDTI ATGAA 2 cut(s) 384, 512
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 252
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.