Rh1BG150300
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
24542908 .. 24543503
596 bp
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UTR
Exon/CDS
Intron
Rh1BG150300.1

Sequence Viewer

Length: 294 bp
ATGGCTTGCTCTTATGTCGTAGCCTTTACAGATTGGGTAAAACCTGCGGTTATTACATCTGCAATCATTCAACAAAGAAATTTTCAATTCTTGCTCAATTTAATGCTGAAGCAGATTATGTATCTGGATCGGAACGACTGGGATGACGTCGCCACCACCCTCGCCATCCTATTCCCCCTCATATCGCCTTCTAAGACCGCCGTGCAGTGCCACAACAAGATCGAGAAGCTTCAAAAACTGTACCGTTTCGAGAAGCAGCATGCTTCGTCTCGACCCAATCGGTTCTCGCCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.3

Weight (kDa)

9.51

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 2 cut(s) 47, 198
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 71, 86, 233
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 79
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 148, 165
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 273
BsmBI CGTCTC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 127, 219
BspACI CCGC 2 cut(s) 47, 198
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 143
BssMI GATC 2 cut(s) 127, 219
BssNI GRCGYC 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 240, 245
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 7, 261
BstDEI CTNAG 2 cut(s) 192, 291
BstF5I GGATG 2 cut(s) 148, 165
BstKTI GATC 2 cut(s) 130, 222
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 127, 219
BstNSI RCATGY 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 148, 165
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 7, 261
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 260
CviJI RGCY 3 cut(s) 5, 23, 229
CviKI_1 RGCY 3 cut(s) 5, 23, 229
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 192, 291
DpnI GATC 2 cut(s) 129, 221
DpnII GATC 2 cut(s) 127, 219
Eco57I CTGAAG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 15, 119, 182, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 152, 155
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 125, 223, 250, 270
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 240, 245
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 62, 205
HpyF3I CTNAG 2 cut(s) 192, 291
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 2 cut(s) 127, 219
LpnPI CCDG 3 cut(s) 57, 110, 124
Lsp1109I GCAGC 1 cut(s) 268
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 129, 221
MboI GATC 2 cut(s) 127, 219
MluCI AATT 3 cut(s) 79, 86, 97
MnlI CCTC 2 cut(s) 170, 188
MseI TTAA 1 cut(s) 101
NdeII GATC 2 cut(s) 127, 219
NlaIII CATG 1 cut(s) 263
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 258
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 127, 219
SetI ASST 3 cut(s) 46, 150, 231
SphI GCATGC 1 cut(s) 263
Sse9I AATT 3 cut(s) 79, 86, 97
SsiI CCGC 2 cut(s) 47, 198
TaaI ACNGT 2 cut(s) 240, 245
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 222, 249, 271
TasI AATT 3 cut(s) 79, 86, 97
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 212
TseI GCWGC 1 cut(s) 256
TspRI CASTG 1 cut(s) 212
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 263
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.