Rorug03G0130100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001209
Physical Location & Seq
Forward (+)
10536427 .. 10537970
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0130100.1

Sequence Viewer

Length: 963 bp
ATGTCAATCCTCCACACCTCTCTCACACACCAACACCAATCCCTCTCCTTCTCCAAATCCCTAACCTCCCCAACCCCTCTCTTCCTCTCCCTCTCCCTTAAACCCTTAACCCCAAAGCCCACATTCATCCGAATGGGCGGCGGGCCCAGAACCTTCCCCGGCGGCGTATCCAAGTGGCAGTGGAAGCGCATGCAGGCCAAGAAAGCCAAGCAGCTCCTCAAGGCCCGCCTCTGCCGCGAGCGCCAAATCTACGAGATGCGAAAGCGGGCCGAGCTCAAGGCCGCCGTGTCGGAGCTCGAGCGCCCCTGGGAGGCCGTCGAGAAGCCTCCCAATTTGTTCTCCGTCAGCGCCGATGAGCAGGTTAAGGTCTTGGCCGATAGGTTCCAGAGGCCGGGAGGGTTTGACCTTTGGACCGAGAGGGATGGGCCGGAGCTGTTTCGGGCCATGGAGGACCTGCCGTCGGCGAGGTTTTTCCCGAAGGGGGTTGTGCATAGTGTGAGGCCGTATAGGAGGATTGGGGCTGAGGAGGAAGATGAGGGTTTTGGAGGAGTCAAGAGGTTGGTTGAATTGGGTGCAGAGAAGGGTTTGAATTCGAAAAGTTCTAGGATGTATAATGGTAAACTGAGGAGGAAGGGGAAGGGGAATAGGGGAAATGCTCAAGCTTCAAGTGATGTTGATAGGAAACAGAGAGGACAGAGTTCTGTAATGCGCAGTGGCGAAAATGGGAATTATAGGAGAAATGGTGGATTGAAGTTGAATGGTTTGGAGGATGATAGGAGGTCTTCGAGTGGGTATAATTCGAGAGAAGGTGGTGTTGATAGGAGACAGAGAGGACAGGGTCGCATAATCCGCAGTGGGGAAAATACGTGTGATAGAAGAAAAGGTGCATTGAAATCGAAAGGTTCAGAGTCTGAAGTTTTCGATATGAGGTTGCGACAAGATGGGAGTTATGAATTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

320

Amino Acids

36.21

Weight (kDa)

10.4

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 710
Acc36I ACCTGC 2 cut(s) 349, 462
AccII CGCG 1 cut(s) 237
AciI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 850
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 2 cut(s) 589, 953
AcuI CTGAAG 1 cut(s) 933
AfiI CCNNNNNNNGG 5 cut(s) 310, 391, 460, 481, 856
AflIII ACRYGT 1 cut(s) 866
AgsI TTSAA 7 cut(s) 566, 589, 666, 751, 757, 892, 959
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 5 cut(s) 214, 274, 295, 433, 662
AluI AGCT 5 cut(s) 214, 274, 295, 433, 662
Alw21I GWGCWC 2 cut(s) 276, 297
Alw26I GTCTC 1 cut(s) 817
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 1 cut(s) 296
ApaI GGGCCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 589, 953
AspLEI GCGC 5 cut(s) 189, 243, 303, 350, 711
AspS9I GGNCC 8 cut(s) 143, 144, 223, 267, 411, 425, 441, 451
AsuC2I CCSGG 2 cut(s) 159, 393
AsuII TTCGAA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 2 cut(s) 411, 451
BaeGI GKGCMC 1 cut(s) 147
BanII GRGCYC 3 cut(s) 147, 276, 297
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 276, 297
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 416, 935
BceAI ACGGC 4 cut(s) 269, 299, 442, 487
BcgI CGANNNNNNTGC 2 cut(s) 876, 910
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 2 cut(s) 159, 393
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 1 cut(s) 603
BfoI RGCGCY 3 cut(s) 244, 304, 351
BfuAI ACCTGC 2 cut(s) 349, 462
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 5 cut(s) 139, 163, 212, 235, 282
BlsI GCNGC 5 cut(s) 140, 164, 213, 236, 283
Bme1390I CCNGG 3 cut(s) 159, 307, 393
Bme18I GGWCC 2 cut(s) 411, 451
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 8 cut(s) 143, 144, 223, 267, 411, 425, 441, 451
BmiI GGNNCC 2 cut(s) 145, 383
BmrFI CCNGG 3 cut(s) 159, 307, 393
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 3 cut(s) 203, 260, 642
BpuMI CCSGG 2 cut(s) 159, 393
BsaAI YACGTR 1 cut(s) 867
BsaJI CCNNGG 4 cut(s) 157, 305, 306, 444
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 5 cut(s) 310, 391, 460, 481, 856
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 4 cut(s) 157, 305, 306, 444
BseGI GGATG 4 cut(s) 126, 427, 612, 775
BseLI CCNNNNNNNGG 5 cut(s) 310, 391, 460, 481, 856
BseMII CTCAG 2 cut(s) 513, 614
BseRI GAGGAG 4 cut(s) 206, 539, 561, 640
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 276, 297
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 3 cut(s) 159, 392, 428
BslI CCNNNNNNNGG 5 cut(s) 310, 391, 460, 481, 856
BsmAI GTCTC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 593
Bsp120I GGGCCC 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 147, 276, 297
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 850
BspCNI CTCAG 2 cut(s) 514, 615
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 145, 383
BspMI ACCTGC 2 cut(s) 349, 462
BspT104I TTCGAA 1 cut(s) 593
BssECI CCNNGG 4 cut(s) 157, 305, 306, 444
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 867
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
BstDEI CTNAG 2 cut(s) 522, 623
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 4 cut(s) 126, 427, 612, 775
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 3 cut(s) 244, 304, 351
BstHHI GCGC 5 cut(s) 189, 243, 303, 350, 711
BstMAI GTCTC 1 cut(s) 817
BstMWI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 849
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 157, 305, 391
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 774
BsuI GTATCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 4 cut(s) 126, 427, 612, 775
BtsI GCAGTG 3 cut(s) 185, 718, 859
BtsIMutI CAGTG 3 cut(s) 185, 718, 859
BveI ACCTGC 2 cut(s) 349, 462
Cac8I GCNNGC 6 cut(s) 143, 191, 195, 226, 239, 267
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 5 cut(s) 189, 243, 303, 350, 711
Cfr13I GGNCC 8 cut(s) 143, 144, 223, 267, 411, 425, 441, 451
CviAII CATG 2 cut(s) 190, 445
DdeI CTNAG 2 cut(s) 522, 623
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 2 cut(s) 274, 295
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 3 cut(s) 147, 276, 297
Eco47I GGWCC 2 cut(s) 411, 451
Eco53kI GAGCTC 2 cut(s) 274, 295
Eco57I CTGAAG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 2 cut(s) 274, 295
EcoO109I RGGNCCY 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 3 cut(s) 147, 276, 297
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 2 cut(s) 193, 448
FatI CATG 2 cut(s) 189, 444
FauI CCCGC 3 cut(s) 134, 233, 258
Fnu4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FokI GGATG 4 cut(s) 113, 434, 619, 782
FriOI GRGCYC 3 cut(s) 147, 276, 297
Fsp4HI GCNGC 5 cut(s) 139, 163, 212, 235, 282
FspBI CTAG 1 cut(s) 603
FspI TGCGCA 1 cut(s) 710
GlaI GCGC 5 cut(s) 188, 242, 302, 349, 710
GluI GCNGC 5 cut(s) 139, 163, 212, 235, 282
HaeII RGCGCY 3 cut(s) 244, 304, 351
HapII CCGG 3 cut(s) 159, 392, 428
HhaI GCGC 5 cut(s) 189, 243, 303, 350, 711
Hin1II CATG 2 cut(s) 193, 448
Hin6I GCGC 5 cut(s) 187, 241, 301, 348, 709
HinP1I GCGC 5 cut(s) 187, 241, 301, 348, 709
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 2 cut(s) 549, 908
HpaII CCGG 3 cut(s) 159, 392, 428
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 4 cut(s) 131, 292, 907, 913
Hpy188III TCNNGA 5 cut(s) 319, 385, 475, 553, 801
Hpy8I GTNNAC 1 cut(s) 620
Hpy99I CGWCG 2 cut(s) 320, 463
HpyAV CCTTC 7 cut(s) 58, 163, 472, 574, 625, 631, 800
HpyCH4IV ACGT 1 cut(s) 866
HpyCH4V TGCA 4 cut(s) 193, 490, 575, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 849
HpyF3I CTNAG 2 cut(s) 522, 623
HpySE526I ACGT 1 cut(s) 866
Hsp92II CATG 2 cut(s) 193, 448
HspAI GCGC 5 cut(s) 187, 241, 301, 348, 709
LmnI GCTCC 3 cut(s) 219, 292, 430
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 866
MboII GAAGA 4 cut(s) 73, 542, 774, 888
MhlI GDGCHC 3 cut(s) 147, 276, 297
MluCI AATT 6 cut(s) 331, 566, 589, 727, 796, 953
MlyI GAGTC 2 cut(s) 558, 917
MmeI TCCRAC 1 cut(s) 270
MseI TTAA 3 cut(s) 99, 107, 363
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 3 cut(s) 159, 392, 428
MspR9I CCNGG 3 cut(s) 159, 307, 393
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 6 cut(s) 184, 203, 234, 240, 271, 849
NciI CCSGG 2 cut(s) 159, 393
NcoI CCATGG 1 cut(s) 444
NlaIII CATG 2 cut(s) 193, 448
NlaIV GGNNCC 2 cut(s) 145, 383
NmeAIII GCCGAG 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 710
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 593
PaeI GCATGC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 296
PasI CCCWGGG 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 837
PkrI GCNGC 5 cut(s) 140, 164, 213, 236, 283
PleI GAGTC 2 cut(s) 557, 916
PpsI GAGTC 2 cut(s) 557, 916
Ppu21I YACGTR 1 cut(s) 867
PpuMI RGGWCCY 1 cut(s) 451
Psp124BI GAGCTC 2 cut(s) 276, 297
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 145, 383
PspOMI GGGCCC 1 cut(s) 143
PspPI GGNCC 8 cut(s) 143, 144, 223, 267, 411, 425, 441, 451
PspPPI RGGWCCY 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 911
PsyI GACNNNGTC 1 cut(s) 837
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 2 cut(s) 276, 297
SaqAI TTAA 3 cut(s) 99, 107, 363
SatI GCNGC 5 cut(s) 139, 163, 212, 235, 282
Sau96I GGNCC 8 cut(s) 143, 144, 223, 267, 411, 425, 441, 451
SchI GAGTC 2 cut(s) 558, 917
ScrFI CCNGG 3 cut(s) 159, 307, 393
SduI GDGCHC 3 cut(s) 147, 276, 297
SfaNI GCATC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 2 cut(s) 411, 451
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 4 cut(s) 218, 275, 296, 657
SmoI CTYRAG 4 cut(s) 218, 275, 296, 657
SphI GCATGC 1 cut(s) 193
Sse9I AATT 6 cut(s) 331, 566, 589, 727, 796, 953
SsiI CCGC 8 cut(s) 138, 141, 162, 226, 235, 265, 282, 850
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 2 cut(s) 276, 297
StyD4I CCNGG 3 cut(s) 157, 305, 391
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 1 cut(s) 869
TaqI TCGA 7 cut(s) 297, 318, 593, 785, 800, 896, 921
TaqII GACCGA 1 cut(s) 428
TasI AATT 6 cut(s) 331, 566, 589, 727, 796, 953
TauI GCSGC 4 cut(s) 141, 165, 237, 284
Tru1I TTAA 3 cut(s) 99, 107, 363
Tru9I TTAA 3 cut(s) 99, 107, 363
TscAI CASTG 3 cut(s) 185, 718, 859
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 3 cut(s) 185, 718, 859
Tth111I GACNNNGTC 1 cut(s) 837
VpaK11BI GGWCC 2 cut(s) 411, 451
XapI RAATTY 2 cut(s) 589, 953
XceI RCATGY 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 296
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.