Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

28422086 .. 28422829

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTCTCCTTTATCTTCAAGGACCACGTCGCCGCCGCCACGGCTTCCGCGGCTCCATCCTCCCCGCCCAAGACCGCGTTGCAGTGCCGTCATAAGATGAAGAATCTCCTCAAGCGGTACCGTGCCGAGAAGCGGTGGGCTTCTAGGTACCCGGGTCGGTCTTCCTCCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGACCCGGATCGGGGATTGGATAATGGTGGTGAGTTTGGAGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

85

Amino Acids

9.54

Weight (kDa)

9.51

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	20 - 68	7.9e-09	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	117, 147
AccB1I	GGYRCC	2 cut(s)	117, 147
AccII	CGCG	2 cut(s)	50, 77
AciI	CCGC	8 cut(s)	33, 36, 48, 50, 65, 75, 115, 133
AclWI	GGATC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	119, 149
AfiI	CCNNNNNNNGG	4 cut(s)	132, 174, 220, 221
AgsI	TTSAA	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	151
Asp718I	GGTACC	2 cut(s)	117, 147
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	3 cut(s)	152, 153, 215
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	22
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BanI	GGYRCC	2 cut(s)	117, 147
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	57, 72
BcnI	CCSGG	3 cut(s)	152, 153, 215
BfaI	CTAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	33, 36, 51
BlsI	GCNGC	3 cut(s)	34, 37, 52
Bme1390I	CCNGG	3 cut(s)	152, 153, 215
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	54, 119, 149
BmrFI	CCNGG	3 cut(s)	152, 153, 215
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	3 cut(s)	152, 153, 215
BsaJI	CCNNGG	3 cut(s)	39, 48, 151
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 174, 220, 221
BseDI	CCNNGG	3 cut(s)	39, 48, 151
BseGI	GGATG	2 cut(s)	56, 202
BseLI	CCNNNNNNNGG	4 cut(s)	132, 174, 220, 221
BseRI	GAGGAG	2 cut(s)	98, 157
Bsh1236I	CGCG	2 cut(s)	50, 77
BshNI	GGYRCC	2 cut(s)	117, 147
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	152, 215
BslI	CCNNNNNNNGG	4 cut(s)	132, 174, 220, 221
BsoBI	CYCGRG	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	8 cut(s)	33, 36, 48, 50, 65, 75, 115, 133
BspFNI	CGCG	2 cut(s)	50, 77
BspLI	GGNNCC	3 cut(s)	54, 119, 149
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	2 cut(s)	117, 147
BssECI	CCNNGG	3 cut(s)	39, 48, 151
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	122
BstDSI	CCRYGG	2 cut(s)	39, 48
BstF5I	GGATG	2 cut(s)	56, 202
BstFNI	CGCG	2 cut(s)	50, 77
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstSCI	CCNGG	3 cut(s)	150, 151, 213
BstUI	CGCG	2 cut(s)	50, 77
BstV2I	GAAGAC	1 cut(s)	153
BtgI	CCRYGG	2 cut(s)	39, 48
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	56, 202
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	22
Cfr42I	CCGCGG	1 cut(s)	51
Cfr9I	CCCGGG	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	118, 148
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	4 cut(s)	44, 53, 140, 179
CviKI_1	RGCY	4 cut(s)	44, 53, 140, 179
CviQI	GTAC	2 cut(s)	118, 148
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	151
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	93, 194
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	33, 36, 51
FokI	GGATG	2 cut(s)	43, 209
Fsp4HI	GCNGC	3 cut(s)	33, 36, 51
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	3 cut(s)	33, 36, 51
HapII	CCGG	2 cut(s)	152, 215
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	2 cut(s)	103, 206
HpaII	CCGG	2 cut(s)	152, 215
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	32, 175
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	196
KpnI	GGTACC	2 cut(s)	121, 151
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	165, 228
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	27
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	7, 112, 153
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	70, 119, 175, 178
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	152, 215
MspR9I	CCNGG	3 cut(s)	152, 153, 215
MvnI	CGCG	2 cut(s)	50, 77
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NciI	CCSGG	3 cut(s)	152, 153, 215
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	54, 119, 149
NmeAIII	GCCGAG	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	34, 37, 52
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	54, 119, 149
PspPI	GGNCC	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	119, 149
RsaNI	GTAC	2 cut(s)	118, 148
SacII	CCGCGG	1 cut(s)	51
SatI	GCNGC	3 cut(s)	33, 36, 51
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	3 cut(s)	152, 153, 215
SetI	ASST	2 cut(s)	30, 149
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	22
SmaI	CCCGGG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	8 cut(s)	33, 36, 48, 50, 65, 75, 115, 133
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	150, 151, 213
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	147
TauI	GCSGC	3 cut(s)	35, 38, 53
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	113, 176, 213
TspMI	CCCGGG	1 cut(s)	151
TspRI	CASTG	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	22
XmaI	CCCGGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.