Rorug04G0106200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001209
Physical Location & Seq
Reverse (-)
16425715 .. 16428785
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0106200.1

Sequence Viewer

Length: 786 bp
ATGGCAAAGGCTGTTCTCCCTCACCATCTTCGGTACCAGCCCCTCAAGGCCATCACCGGCCATAATCCAAGCGGTCGTCATCCTCTCCGTCGATCTGAGGGCATGCCCGGCAACCGCTACTACACCGCCGTGTTCCAGCCCCACGACCGCATCATGGGCTCCCCTCCGGCTAAGGCCTTGGATTGGTACACATTCACGAGCTCCAGCTCCAGTTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCCCAGCGGATTGAGCTCAATTCCAGAGGCAATTGCAACTGCTTTGGCATACTTGTATGGCCACCACCCCAAGCTCAGTGATACCAATGCCTTTCGTGTTCTAGCTGCTGCTTCTTTTCTTGATCTTCAGGTTTGCAGATCCGTGAAATTTCTAGTTGGTGGTGCTTCCTTGAAGGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTAATGGTTGTGGCAGAGCTGCGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATATTGAGGTCTAAGGCTTTGGATAAATCGAAGTATATGGATGGCCTTCGAGCAGTAAGGAAGCACATTCAGAAGCTGGAACATGACCTTGAGTTGCTTAAAGCACATGCTAAAACAAAAGTTGAATTTAGTTCTAATGCTATTGAAGAAACTCCTGAAGATATTGAGAGCGTTGAGTCTGGGAGCTCCTCAAACCCCAATGAGGCCATGAGAACAGCAAAGCTTGCAAAGCTAGACACTCTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

261

Amino Acids

28.42

Weight (kDa)

9.57

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 140 - 166 1.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 506
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 2 cut(s) 58, 307
AcsI RAATTY 2 cut(s) 395, 662
AcuI CTGAAG 2 cut(s) 359, 714
AfaI GTAC 2 cut(s) 35, 188
AfiI CCNNNNNNNGG 4 cut(s) 154, 183, 436, 739
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 3 cut(s) 421, 662, 683
AleI CACNNNNGTG 1 cut(s) 128
Alw21I GWGCWC 3 cut(s) 203, 266, 725
AlwI GGATC 1 cut(s) 381
AlwNI CAGNNNCTG 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 7 cut(s) 48, 58, 174, 248, 307, 580, 741
ApeKI GCWGC 3 cut(s) 353, 356, 503
ApoI RAATTY 2 cut(s) 395, 662
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 14, 46
AvaI CYCGRG 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 481
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 4 cut(s) 161, 203, 266, 725
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 229, 418
Bbv12I GWGCWC 3 cut(s) 203, 266, 725
BbvI GCAGC 3 cut(s) 340, 343, 490
BccI CCATC 4 cut(s) 33, 59, 430, 572
BceAI ACGGC 1 cut(s) 113
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 3 cut(s) 350, 401, 770
BfrI CTTAAG 1 cut(s) 779
BisI GCNGC 3 cut(s) 354, 357, 504
BlsI GCNGC 3 cut(s) 355, 358, 505
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 35, 160
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 229, 418
BpmI CTGGAG 3 cut(s) 187, 193, 468
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 29, 647
BpuMI CCSGG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 183, 436, 739
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 79, 583
BseLI CCNNNNNNNGG 4 cut(s) 154, 183, 436, 739
BseMII CTCAG 2 cut(s) 87, 337
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 715
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 3 cut(s) 340, 343, 490
BseYI CCCAGC 1 cut(s) 251
Bsh1285I CGRYCG 2 cut(s) 76, 148
BshFI GGCC 7 cut(s) 50, 60, 176, 250, 309, 582, 743
BshNI GGYRCC 1 cut(s) 33
BsiEI CGRYCG 2 cut(s) 76, 148
BsiHKAI GWGCWC 3 cut(s) 203, 266, 725
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 57, 108, 167
BslI CCNNNNNNNGG 4 cut(s) 154, 183, 436, 739
BsnI GGCC 7 cut(s) 50, 60, 176, 250, 309, 582, 743
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 5 cut(s) 161, 203, 266, 481, 725
Bsp143I GATC 3 cut(s) 92, 370, 386
BspACI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 506
BspANI GGCC 7 cut(s) 50, 60, 176, 250, 309, 582, 743
BspCNI CTCAG 2 cut(s) 88, 336
BspLI GGNNCC 2 cut(s) 35, 160
BspPI GGATC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 33
BspTI CTTAAG 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 3 cut(s) 92, 370, 386
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 779
BstAPI GCANNNNNTGC 2 cut(s) 527, 761
BstC8I GCNNGC 2 cut(s) 104, 762
BstDEI CTNAG 4 cut(s) 96, 171, 323, 549
BstF5I GGATG 2 cut(s) 79, 583
BstKTI GATC 3 cut(s) 95, 373, 389
BstMBI GATC 3 cut(s) 92, 370, 386
BstMCI CGRYCG 2 cut(s) 76, 148
BstMWI GCNNNNNNNGC 7 cut(s) 108, 156, 261, 512, 527, 761, 766
BstNSI RCATGY 2 cut(s) 106, 647
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 340, 343, 490
BstV2I GAAGAC 2 cut(s) 229, 418
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 7 cut(s) 50, 60, 176, 250, 309, 582, 743
BtsCI GGATG 2 cut(s) 79, 583
BtsIMutI CAGTG 2 cut(s) 331, 479
Cac8I GCNNGC 2 cut(s) 104, 762
CaiI CAGNNNCTG 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 34, 187
CviAII CATG 6 cut(s) 103, 154, 431, 620, 644, 745
CviQI GTAC 2 cut(s) 34, 187
DdeI CTNAG 4 cut(s) 96, 171, 323, 549
DpnI GATC 3 cut(s) 94, 372, 388
DpnII GATC 3 cut(s) 92, 370, 386
EaeI YGGCCR 2 cut(s) 58, 307
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 3 cut(s) 201, 264, 723
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 4 cut(s) 161, 203, 266, 725
Eco53kI GAGCTC 3 cut(s) 201, 264, 723
Eco57I CTGAAG 2 cut(s) 359, 714
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 3 cut(s) 201, 264, 723
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 4 cut(s) 161, 203, 266, 725
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 6 cut(s) 106, 157, 434, 623, 647, 748
FatI CATG 6 cut(s) 102, 153, 430, 619, 643, 744
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 354, 357, 504
FokI GGATG 2 cut(s) 66, 590
FriOI GRGCYC 4 cut(s) 161, 203, 266, 725
Fsp4HI GCNGC 3 cut(s) 354, 357, 504
FspBI CTAG 3 cut(s) 350, 401, 770
GluI GCNGC 3 cut(s) 354, 357, 504
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 3 cut(s) 187, 193, 468
HaeIII GGCC 7 cut(s) 50, 60, 176, 250, 309, 582, 743
HapII CCGG 3 cut(s) 57, 108, 167
Hin1II CATG 6 cut(s) 106, 157, 434, 623, 647, 748
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 2 cut(s) 242, 713
HpaII CCGG 3 cut(s) 57, 108, 167
HphI GGTGA 2 cut(s) 14, 46
Hpy166II GTNNAC 2 cut(s) 189, 466
Hpy188I TCNGA 2 cut(s) 97, 609
Hpy188III TCNNGA 4 cut(s) 196, 272, 368, 692
Hpy8I GTNNAC 2 cut(s) 189, 466
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 415, 593
HpyCH4V TGCA 3 cut(s) 284, 384, 764
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 156, 261, 512, 527, 761, 766
HpyF3I CTNAG 4 cut(s) 96, 171, 323, 549
Hsp92II CATG 6 cut(s) 106, 157, 434, 623, 647, 748
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 3 cut(s) 92, 370, 386
LmnI GCTCC 5 cut(s) 164, 206, 212, 720, 728
Lsp1109I GCAGC 3 cut(s) 340, 343, 490
LweI GCATC 1 cut(s) 159
MaeI CTAG 3 cut(s) 350, 401, 770
MalI GATC 3 cut(s) 94, 372, 388
MboI GATC 3 cut(s) 92, 370, 386
MboII GAAGA 6 cut(s) 20, 234, 365, 418, 695, 707
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 5 cut(s) 161, 203, 266, 481, 725
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 4 cut(s) 267, 279, 395, 662
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 2 cut(s) 236, 722
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 425
MscI TGGCCA 1 cut(s) 309
MseI TTAA 3 cut(s) 486, 636, 780
MslI CAYNNNNRTG 2 cut(s) 128, 471
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 3 cut(s) 57, 108, 167
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 279
MwoI GCNNNNNNNGC 7 cut(s) 108, 156, 261, 512, 527, 761, 766
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 92, 370, 386
NlaIII CATG 6 cut(s) 106, 157, 434, 623, 647, 748
NlaIV GGNNCC 2 cut(s) 35, 160
NspI RCATGY 2 cut(s) 106, 647
OliI CACNNNNGTG 1 cut(s) 128
PaeI GCATGC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 244
PceI AGGCCT 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 3 cut(s) 355, 358, 505
PleI GAGTC 2 cut(s) 236, 721
PpsI GAGTC 2 cut(s) 236, 721
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 3 cut(s) 203, 266, 725
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 35, 160
PspPI GGNCC 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 613
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 2 cut(s) 35, 188
RsaNI GTAC 2 cut(s) 34, 187
RseI CAYNNNNRTG 2 cut(s) 128, 471
SacI GAGCTC 3 cut(s) 203, 266, 725
SaqAI TTAA 3 cut(s) 486, 636, 780
SatI GCNGC 3 cut(s) 354, 357, 504
Sau3AI GATC 3 cut(s) 92, 370, 386
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 236, 722
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 5 cut(s) 161, 203, 266, 481, 725
SfaNI GCATC 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 128, 471
SmlI CTYRAG 4 cut(s) 44, 244, 626, 779
SmoI CTYRAG 4 cut(s) 44, 244, 626, 779
SphI GCATGC 1 cut(s) 106
Sse9I AATT 4 cut(s) 267, 279, 395, 662
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 7 cut(s) 72, 115, 126, 148, 216, 255, 506
SspMI CTAG 3 cut(s) 350, 401, 770
SstI GAGCTC 3 cut(s) 203, 266, 725
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 5 cut(s) 91, 240, 245, 566, 586
TasI AATT 4 cut(s) 267, 279, 395, 662
Tru1I TTAA 3 cut(s) 486, 636, 780
Tru9I TTAA 3 cut(s) 486, 636, 780
TscAI CASTG 2 cut(s) 331, 486
TseI GCWGC 3 cut(s) 353, 356, 503
TspGWI ACGGA 2 cut(s) 77, 379
TspRI CASTG 2 cut(s) 331, 486
Van91I CCANNNNNTGG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 779
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 2 cut(s) 395, 662
XceI RCATGY 2 cut(s) 106, 647
XhoI CTCGAG 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 3 cut(s) 350, 401, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.