Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000524.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

67875 .. 69850

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000524.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgctctcctttatcttctgggaccacgtcgccgcctccacagcttccgcgactccatcttcgcagcccaagaccacgttgcagtgccgtcataagatggagaagctccgcaagcggtaccgtgctgagaagcagcgggcttctaggtacccgggtcggtcttcctcctcattgtgggctttgtttcatctaatggatgaaatggagtccgacccggatcggggattggataatggtggtgagttttcgttaaaggctcttaatttaatgaaatttgatggaaatggagggtggaatggtccgattggcggcgagacgacgagggaggctcagcggtatgcatacaattgcatgttgtttttgtcaaaaccactcgttctcaaaccttcttctactagtgcaacatctctaattctctacaaactaacaaagatggagaaaacttttgaggcgtttgagtgtcatgatgaagaggaagagaatgttgttgaagagacttattataagtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

170

Amino Acids

19.49

Weight (kDa)

6.91

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
Acc65I	GGTACC	2 cut(s)	117, 147
AccB1I	GGYRCC	2 cut(s)	117, 147
AccII	CGCG	1 cut(s)	50
AciI	CCGC	7 cut(s)	33, 48, 109, 115, 136, 309, 334
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	2 cut(s)	119, 149
AfiI	CCNNNNNNNGG	4 cut(s)	174, 220, 221, 308
AgsI	TTSAA	1 cut(s)	491
AhlI	ACTAGT	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	44, 106
AluI	AGCT	2 cut(s)	44, 106
Alw26I	GTCTC	2 cut(s)	308, 488
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	64, 133
ApoI	RAATTY	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
Asp718I	GGTACC	2 cut(s)	117, 147
AspS9I	GGNCC	2 cut(s)	22, 299
AsuC2I	CCSGG	3 cut(s)	152, 153, 215
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	22, 299
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BanI	GGYRCC	2 cut(s)	117, 147
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	76, 145
BccI	CCATC	4 cut(s)	64, 91, 272, 427
BceAI	ACGGC	1 cut(s)	72
BcnI	CCSGG	3 cut(s)	152, 153, 215
BcoDI	GTCTC	2 cut(s)	308, 488
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	144, 396
BisI	GCNGC	4 cut(s)	33, 65, 134, 310
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	4 cut(s)	34, 66, 135, 311
Bme1390I	CCNGG	3 cut(s)	152, 153, 215
Bme18I	GGWCC	2 cut(s)	22, 299
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	22, 299
BmiI	GGNNCC	3 cut(s)	23, 119, 149
BmrFI	CCNGG	3 cut(s)	152, 153, 215
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	3 cut(s)	152, 153, 215
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 220, 221, 308
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	174, 220, 221, 308
BseMII	CTCAG	2 cut(s)	117, 344
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	76, 145
Bsh1236I	CGCG	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	117, 147
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	152, 215
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	4 cut(s)	174, 220, 221, 308
BsmAI	GTCTC	2 cut(s)	308, 488
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	7 cut(s)	33, 48, 109, 115, 136, 309, 334
BspCNI	CTCAG	2 cut(s)	118, 343
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	23, 119, 149
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	2 cut(s)	117, 147
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	3 cut(s)	465, 471, 486
BstC8I	GCNNGC	2 cut(s)	113, 138
BstDEI	CTNAG	2 cut(s)	126, 330
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	308, 488
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 112
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	150, 151, 213
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	76, 145
BstV2I	GAAGAC	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	113, 138
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	22, 299
Cfr9I	CCCGGG	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	118, 148
CviAII	CATG	2 cut(s)	352, 464
CviJI	RGCY	7 cut(s)	44, 67, 106, 140, 179, 257, 329
CviKI_1	RGCY	7 cut(s)	44, 67, 106, 140, 179, 257, 329
CviQI	GTAC	2 cut(s)	118, 148
DdeI	CTNAG	2 cut(s)	126, 330
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	465, 471, 486
EarI	CTCTTC	3 cut(s)	465, 471, 486
Eco47I	GGWCC	2 cut(s)	22, 299
Eco88I	CYCGRG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	355, 467
FaiI	YATR	6 cut(s)	93, 339, 343, 353, 465, 504
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	351, 463
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	33, 65, 134, 310
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	33, 65, 134, 310
FspBI	CTAG	2 cut(s)	144, 396
GluI	GCNGC	4 cut(s)	33, 65, 134, 310
HapII	CCGG	2 cut(s)	152, 215
Hin1II	CATG	2 cut(s)	355, 467
HinfI	GANTC	2 cut(s)	52, 206
HpaII	CCGG	2 cut(s)	152, 215
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	211, 303
Hpy188III	TCNNGA	1 cut(s)	464
Hpy99I	CGWCG	2 cut(s)	32, 322
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	27, 77
HpyCH4V	TGCA	4 cut(s)	82, 341, 351, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 112
HpyF3I	CTNAG	2 cut(s)	126, 330
HpySE526I	ACGT	2 cut(s)	27, 77
Hsp92II	CATG	2 cut(s)	355, 467
KpnI	GGTACC	2 cut(s)	121, 151
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	3 cut(s)	4, 165, 228
Lsp1109I	GCAGC	2 cut(s)	76, 145
MaeI	CTAG	2 cut(s)	144, 396
MaeII	ACGT	2 cut(s)	27, 77
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	7 cut(s)	7, 51, 153, 381, 482, 488, 503
MfeI	CAATTG	1 cut(s)	346
MluCI	AATT	4 cut(s)	262, 272, 346, 411
MlyI	GAGTC	2 cut(s)	46, 215
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	46, 175, 178, 281, 315, 319, 442, 466
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	3 cut(s)	251, 261, 266
MspA1I	CMGCKG	2 cut(s)	136, 334
MspI	CCGG	2 cut(s)	152, 215
MspR9I	CCNGG	3 cut(s)	152, 153, 215
MunI	CAATTG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	41, 112
NciI	CCSGG	3 cut(s)	152, 153, 215
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	355, 467
NlaIV	GGNNCC	3 cut(s)	23, 119, 149
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	355
PagI	TCATGA	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	4 cut(s)	34, 66, 135, 311
PleI	GAGTC	2 cut(s)	46, 214
PpsI	GAGTC	2 cut(s)	46, 214
PsiI	TTATAA	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	23, 119, 149
PspPI	GGNCC	2 cut(s)	22, 299
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	119, 149
RsaNI	GTAC	2 cut(s)	118, 148
SaqAI	TTAA	3 cut(s)	251, 261, 266
SatI	GCNGC	4 cut(s)	33, 65, 134, 310
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	22, 299
SchI	GAGTC	2 cut(s)	46, 215
ScrFI	CCNGG	3 cut(s)	152, 153, 215
SetI	ASST	6 cut(s)	30, 46, 80, 108, 149, 388
SinI	GGWCC	2 cut(s)	22, 299
SmaI	CCCGGG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	262, 272, 346, 411
SsiI	CCGC	7 cut(s)	33, 48, 109, 115, 136, 309, 334
SspMI	CTAG	2 cut(s)	144, 396
StyD4I	CCNGG	3 cut(s)	150, 151, 213
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	30, 80
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	262, 272, 346, 411
TauI	GCSGC	2 cut(s)	35, 312
Tru1I	TTAA	3 cut(s)	251, 261, 266
Tru9I	TTAA	3 cut(s)	251, 261, 266
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	2 cut(s)	64, 133
TspDTI	ATGAA	4 cut(s)	176, 213, 284, 483
TspMI	CCCGGG	1 cut(s)	151
TspRI	CASTG	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	22, 299
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	355
XmaI	CCCGGG	1 cut(s)	151
XspI	CTAG	2 cut(s)	144, 396
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.