RLG00000036554
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001209
Physical Location & Seq
Reverse (-)
81852749 .. 81854821
2073 bp
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UTR
Exon/CDS
Intron
RLM00000036554

Sequence Viewer

Length: 459 bp
ATGCTCTCCTTTATCTTCTTGGACCACGTCGCTGCCCCCACAGCTTCCGCGACTCCATCCTCACAACCTAAGACTGCGTTGCAGTGCCGTCATAAGATGGAGAAGCTCCGCAAGCGGTACCGTGCTGAGAAGCAGCGGGCTTCTAGGTACCCGGGTCAGTCTTCCTCCTCTTCGTGGGCTTTGTTTCATCTTATGGATGAAATGGAGTCCGACCCGGATCGGGGATTGGATAATGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCTTAATTTGATGAAATTTGATGGAAATGGAGGGTGGAATGGTCGGATTGGCGGCGGGACGACGAGGGAGGCTCAGGATATGTCCAAGGTTCACAGACCTGACTTATGGTTAGAGAAAGTACTTGAACAACGAGATACTACACCTGTAACAAAAGAGAAAGCCCCAGCTCTGGTAGCTTTGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

153

Amino Acids

16.87

Weight (kDa)

9.33

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 23 - 68 2.6e-08 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 24 - 65 4.3e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 117, 147
AccB1I GGYRCC 2 cut(s) 117, 147
AccII CGCG 1 cut(s) 50
AciI CCGC 6 cut(s) 48, 109, 115, 136, 321, 324
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 3 cut(s) 119, 149, 390
AfiI CCNNNNNNNGG 4 cut(s) 174, 220, 221, 439
AgsI TTSAA 1 cut(s) 395
AjiI CACGTC 1 cut(s) 28
AluBI AGCT 4 cut(s) 44, 106, 437, 446
AluI AGCT 4 cut(s) 44, 106, 437, 446
AlwI GGATC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 32, 133
ApoI RAATTY 1 cut(s) 284
Asp718I GGTACC 2 cut(s) 117, 147
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 3 cut(s) 152, 153, 215
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 22
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BanI GGYRCC 2 cut(s) 117, 147
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 19, 145
BccI CCATC 4 cut(s) 64, 91, 284, 445
BceAI ACGGC 1 cut(s) 72
BcnI CCSGG 3 cut(s) 152, 153, 215
BfaI CTAG 1 cut(s) 144
BisI GCNGC 3 cut(s) 33, 134, 322
BlsI GCNGC 3 cut(s) 34, 135, 323
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 3 cut(s) 152, 153, 215
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 151
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 119, 149
BmrFI CCNGG 3 cut(s) 152, 153, 215
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 325, 357
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 3 cut(s) 152, 153, 215
BsaJI CCNNGG 2 cut(s) 151, 354
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 220, 221, 439
BseDI CCNNGG 2 cut(s) 151, 354
BseGI GGATG 2 cut(s) 56, 202
BseLI CCNNNNNNNGG 4 cut(s) 174, 220, 221, 439
BseMII CTCAG 2 cut(s) 117, 356
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 19, 145
BseYI CCCAGC 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 117, 147
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 152, 215
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 4 cut(s) 174, 220, 221, 439
BsmFI GGGAC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 151
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 6 cut(s) 48, 109, 115, 136, 321, 324
BspCNI CTCAG 2 cut(s) 118, 355
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 119, 149
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 2 cut(s) 117, 147
BssECI CCNNGG 2 cut(s) 151, 354
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 113, 138
BstDEI CTNAG 3 cut(s) 69, 126, 342
BstF5I GGATG 2 cut(s) 56, 202
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 41, 112, 443
BstSCI CCNGG 3 cut(s) 150, 151, 213
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 19, 145
BstV2I GAAGAC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 56, 202
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 113, 138
Cfr13I GGNCC 1 cut(s) 22
Cfr9I CCCGGG 1 cut(s) 151
Csp6I GTAC 3 cut(s) 118, 148, 389
CviJI RGCY 9 cut(s) 44, 106, 140, 179, 269, 341, 431, 437, 446
CviKI_1 RGCY 9 cut(s) 44, 106, 140, 179, 269, 341, 431, 437, 446
CviQI GTAC 3 cut(s) 118, 148, 389
DdeI CTNAG 3 cut(s) 69, 126, 342
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaiI YATR 4 cut(s) 93, 194, 350, 376
FaqI GGGAC 1 cut(s) 340
FauI CCCGC 2 cut(s) 129, 317
Fnu4HI GCNGC 3 cut(s) 33, 134, 322
FokI GGATG 2 cut(s) 43, 209
Fsp4HI GCNGC 3 cut(s) 33, 134, 322
FspBI CTAG 1 cut(s) 144
GluI GCNGC 3 cut(s) 33, 134, 322
GsaI CCCAGC 1 cut(s) 437
HapII CCGG 2 cut(s) 152, 215
HinfI GANTC 2 cut(s) 52, 206
HpaII CCGG 2 cut(s) 152, 215
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 211, 315
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 2 cut(s) 32, 334
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 112, 443
HpyF3I CTNAG 3 cut(s) 69, 126, 342
HpySE526I ACGT 1 cut(s) 27
KpnI GGTACC 2 cut(s) 121, 151
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 7 cut(s) 165, 228, 329, 381, 425, 426, 447
Lsp1109I GCAGC 2 cut(s) 19, 145
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 415
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 7, 153, 162
MluCI AATT 2 cut(s) 274, 284
MlyI GAGTC 2 cut(s) 46, 215
MmeI TCCRAC 2 cut(s) 234, 293
MnlI CCTC 7 cut(s) 70, 175, 178, 242, 293, 327, 331
MseI TTAA 3 cut(s) 263, 273, 457
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 152, 215
MspR9I CCNGG 3 cut(s) 152, 153, 215
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 41, 112, 443
NciI CCSGG 3 cut(s) 152, 153, 215
NdeII GATC 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 119, 149
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 3 cut(s) 34, 135, 323
PleI GAGTC 2 cut(s) 46, 214
PpsI GAGTC 2 cut(s) 46, 214
PspFI CCCAGC 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 119, 149
PspPI GGNCC 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 26
RsaI GTAC 3 cut(s) 119, 149, 390
RsaNI GTAC 3 cut(s) 118, 148, 389
SaqAI TTAA 3 cut(s) 263, 273, 457
SatI GCNGC 3 cut(s) 33, 134, 322
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 390
SchI GAGTC 2 cut(s) 46, 215
ScrFI CCNGG 3 cut(s) 152, 153, 215
SinI GGWCC 1 cut(s) 22
SmaI CCCGGG 1 cut(s) 153
Sse9I AATT 2 cut(s) 274, 284
SsiI CCGC 6 cut(s) 48, 109, 115, 136, 321, 324
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 150, 151, 213
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 30
TasI AATT 2 cut(s) 274, 284
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 3 cut(s) 263, 273, 457
Tru9I TTAA 3 cut(s) 263, 273, 457
TscAI CASTG 1 cut(s) 89
TseI GCWGC 2 cut(s) 32, 133
TspDTI ATGAA 3 cut(s) 176, 213, 296
TspMI CCCGGG 1 cut(s) 151
TspRI CASTG 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 1 cut(s) 284
XmaI CCCGGG 1 cut(s) 151
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.