Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

23537546 .. 23538984

Gene Structure 1439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTATGGAGGAATTGGAAGGCGAGTCTGGTAAGAAGCCGATCCACACGGCCCGTAAAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTTTCTTCGAAAATTCGGAGGAGTGGAGTCTAGTGGTGTTGGTGTTAACGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCGGTTGAAGAGATGGTTTCTTCGATTCAGTTGCTTGGAGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAAATGAAGCAAACTCAGGTTATTATGGAATCGCAGCAGCAGATAGTGAATGCTTGTGTCAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATGAAGGCCTTGTCGACTGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

250

Amino Acids

28.37

Weight (kDa)

9.92

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	14 - 104	1.4e-15	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 370
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	740
AccII	CGCG	1 cut(s)	194
AclWI	GGATC	2 cut(s)	331, 509
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	364, 431
AcyI	GRCGYC	2 cut(s)	138, 371
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	82, 400, 524
AhdI	GACNNNNNGTC	1 cut(s)	91
AluBI	AGCT	2 cut(s)	220, 414
AluI	AGCT	2 cut(s)	220, 414
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	331, 509
AoxI	GGCC	5 cut(s)	57, 103, 252, 345, 732
ApeKI	GCWGC	3 cut(s)	247, 661, 664
ApoI	RAATTY	2 cut(s)	364, 431
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	196, 373
AspS9I	GGNCC	5 cut(s)	45, 58, 93, 252, 346
AsuC2I	CCSGG	1 cut(s)	267
AsuII	TTCGAA	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	45, 93
BanI	GGYRCC	2 cut(s)	231, 370
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	259, 673, 676
BccI	CCATC	3 cut(s)	523, 580, 586
BceAI	ACGGC	1 cut(s)	360
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	450, 597, 751
BfoI	RGCGCY	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	45, 93
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	5 cut(s)	45, 58, 93, 252, 346
BmiI	GGNNCC	2 cut(s)	233, 372
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	603
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	427
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	138, 371
BsaJI	CCNNGG	2 cut(s)	100, 281
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	100, 281
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	429, 656
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	453, 511
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	259, 673, 676
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	2 cut(s)	106, 271
BshFI	GGCC	5 cut(s)	59, 105, 254, 347, 734
BshNI	GGYRCC	2 cut(s)	231, 370
BsiEI	CGRYCG	2 cut(s)	106, 271
BsiSI	CCGG	2 cut(s)	267, 518
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	5 cut(s)	59, 105, 254, 347, 734
Bsp119I	TTCGAA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	210, 336, 514
BspANI	GGCC	5 cut(s)	59, 105, 254, 347, 734
BspCNI	CTCAG	2 cut(s)	428, 655
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	233, 372
BspPI	GGATC	2 cut(s)	331, 509
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	2 cut(s)	231, 370
BsrBI	CCGCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	100, 281
BssMI	GATC	3 cut(s)	210, 336, 514
BssNI	GRCGYC	2 cut(s)	138, 371
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	3 cut(s)	519, 572, 713
BstACI	GRCGYC	2 cut(s)	138, 371
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	387, 415, 642
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	2 cut(s)	196, 373
BstKTI	GATC	3 cut(s)	213, 339, 517
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	210, 336, 514
BstMCI	CGRYCG	2 cut(s)	106, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	259, 673, 676
BstV2I	GAAGAC	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	59, 105, 254, 347, 734
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 694
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	196, 373
Cfr13I	GGNCC	5 cut(s)	45, 58, 93, 252, 346
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	625
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	387, 415, 642
DinI	GGCGCC	1 cut(s)	372
DpnI	GATC	3 cut(s)	212, 338, 516
DpnII	GATC	3 cut(s)	210, 336, 514
DriI	GACNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	519, 572, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	3 cut(s)	519, 572, 713
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	734
Eco47I	GGWCC	2 cut(s)	45, 93
Eco52I	CGGCCG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	372
EheI	GGCGCC	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	628
FaiI	YATR	6 cut(s)	302, 360, 564, 566, 626, 653
FatI	CATG	1 cut(s)	624
FauI	CCCGC	3 cut(s)	26, 39, 243
FblI	GTMKAC	1 cut(s)	740
FokI	GGATG	1 cut(s)	146
FspBI	CTAG	3 cut(s)	450, 597, 751
GlaI	GCGC	2 cut(s)	195, 372
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	5 cut(s)	59, 105, 254, 347, 734
HapII	CCGG	2 cut(s)	267, 518
HhaI	GCGC	2 cut(s)	196, 373
Hin1I	GRCGYC	2 cut(s)	138, 371
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	2 cut(s)	194, 371
HinP1I	GCGC	2 cut(s)	194, 371
HincII	GTYRAC	2 cut(s)	466, 741
HindII	GTYRAC	2 cut(s)	466, 741
HinfI	GANTC	5 cut(s)	320, 446, 541, 656, 746
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	267, 518
Hpy166II	GTNNAC	2 cut(s)	466, 741
Hpy188I	TCNGA	2 cut(s)	241, 437
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	466, 741
Hpy99I	CGWCG	3 cut(s)	53, 56, 143
HpyAV	CCTTC	3 cut(s)	308, 562, 724
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	616, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	387, 415, 642
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 371
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	2 cut(s)	194, 371
KasI	GGCGCC	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	210, 336, 514
LmnI	GCTCC	2 cut(s)	225, 242
LpnPI	CCDG	7 cut(s)	28, 115, 280, 309, 402, 531, 629
Lsp1109I	GCAGC	3 cut(s)	259, 673, 676
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	3 cut(s)	450, 597, 751
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	212, 338, 516
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	3 cut(s)	210, 336, 514
MluCI	AATT	4 cut(s)	161, 308, 364, 431
Mly113I	GGCGCC	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	329, 455
MmeI	TCCRAC	1 cut(s)	678
MseI	TTAA	2 cut(s)	381, 465
MslI	CAYNNNNRTG	1 cut(s)	629
MspA1I	CMGCKG	2 cut(s)	37, 250
MspI	CCGG	2 cut(s)	267, 518
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	682
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	152
NarI	GGCGCC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	210, 336, 514
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	2 cut(s)	233, 372
NmeAIII	GCCGAG	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	734
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	541, 656, 746
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	129
PleI	GAGTC	2 cut(s)	328, 454
PluTI	GGCGCC	1 cut(s)	374
PpsI	GAGTC	2 cut(s)	328, 454
PspN4I	GGNNCC	2 cut(s)	233, 372
PspPI	GGNCC	5 cut(s)	45, 58, 93, 252, 346
PsyI	GACNNNGTC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	629
SalI	GTCGAC	1 cut(s)	739
SaqAI	TTAA	2 cut(s)	381, 465
Sau3AI	GATC	3 cut(s)	210, 336, 514
Sau96I	GGNCC	5 cut(s)	45, 58, 93, 252, 346
SchI	GAGTC	2 cut(s)	329, 455
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	7 cut(s)	141, 222, 358, 416, 513, 573, 648
SfaNI	GCATC	1 cut(s)	603
SfoI	GGCGCC	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	2 cut(s)	45, 93
SmiMI	CAYNNNNRTG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	161, 308, 364, 431
SseBI	AGGCCT	1 cut(s)	734
SspDI	GGCGCC	1 cut(s)	370
SspMI	CTAG	3 cut(s)	450, 597, 751
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	213, 257, 427, 539, 740
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	161, 308, 364, 431
TauI	GCSGC	7 cut(s)	24, 27, 37, 108, 146, 158, 194
TfiI	GAWTC	3 cut(s)	541, 656, 746
Tru1I	TTAA	2 cut(s)	381, 465
Tru9I	TTAA	2 cut(s)	381, 465
TscAI	CASTG	2 cut(s)	203, 694
TseI	GCWGC	3 cut(s)	247, 661, 664
TspDTI	ATGAA	5 cut(s)	407, 423, 581, 647, 743
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	203, 694
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	45, 93
XapI	RAATTY	2 cut(s)	364, 431
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	3 cut(s)	450, 597, 751
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.