Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000339.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

66005 .. 66763

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000339.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgctttcctttatcttctgggaccacgtcgccgtcgccacagcttctgcagctccatcctcaccgcccaagaccgtgttgcagtgctgtcataagatggagaagctcagcaagcggtaccgtgctgagaagcagcgggcttctaggtacccgggtcggtcttcctcctcgtcgtgggctttgtttcatctcatggatgaaatggagtccaaccctgatcggggattggataatggtggtgagtttggacgtgggttttcgttaaaggctcttaatttgatgaaatttgatggaaatggagggtggaatggtcggattggcggcgggatgatgagggaggctcaggttaagctaggaagcagggccaatcataacattttggaagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

129

Amino Acids

14.28

Weight (kDa)

9.69

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	117, 147
AccB1I	GGYRCC	2 cut(s)	117, 147
AciI	CCGC	5 cut(s)	65, 115, 136, 321, 324
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	2 cut(s)	119, 149
AfiI	CCNNNNNNNGG	3 cut(s)	174, 220, 221
AjiI	CACGTC	2 cut(s)	28, 251
AluBI	AGCT	4 cut(s)	44, 53, 106, 352
AluI	AGCT	4 cut(s)	44, 53, 106, 352
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	50, 133
ApoI	RAATTY	1 cut(s)	284
Asp718I	GGTACC	2 cut(s)	117, 147
AspS9I	GGNCC	2 cut(s)	22, 363
AsuC2I	CCSGG	2 cut(s)	152, 153
AsuHPI	GGTGA	2 cut(s)	54, 251
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	22
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BanI	GGYRCC	2 cut(s)	117, 147
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	62, 145
BccI	CCATC	3 cut(s)	64, 91, 284
BceAI	ACGGC	1 cut(s)	17
BcnI	CCSGG	2 cut(s)	152, 153
BfaI	CTAG	2 cut(s)	144, 353
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	51, 134, 322
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	3 cut(s)	52, 135, 323
Bme1390I	CCNGG	2 cut(s)	152, 153
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	2 cut(s)	28, 251
BmgT120I	GGNCC	2 cut(s)	22, 363
BmiI	GGNNCC	3 cut(s)	23, 119, 149
BmrFI	CCNGG	2 cut(s)	152, 153
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	152, 153
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 220, 221
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	56, 202, 333
BseLI	CCNNNNNNNGG	3 cut(s)	174, 220, 221
BseMII	CTCAG	3 cut(s)	117, 121, 356
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	62, 145
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	2 cut(s)	117, 147
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	174, 220, 221
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	5 cut(s)	65, 115, 136, 321, 324
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	3 cut(s)	118, 120, 355
BspLI	GGNNCC	3 cut(s)	23, 119, 149
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	117, 147
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	76, 122
BstC8I	GCNNGC	2 cut(s)	113, 138
BstDEI	CTNAG	3 cut(s)	107, 126, 342
BstF5I	GGATG	3 cut(s)	56, 202, 333
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 112
BstSCI	CCNGG	2 cut(s)	150, 151
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 145
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	365
BtrI	CACGTC	2 cut(s)	28, 251
BtsCI	GGATG	3 cut(s)	56, 202, 333
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	113, 138
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	22, 363
Cfr9I	CCCGGG	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	118, 148
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	9 cut(s)	44, 53, 106, 140, 179, 269, 341, 352, 365
CviKI_1	RGCY	9 cut(s)	44, 53, 106, 140, 179, 269, 341, 352, 365
CviQI	GTAC	2 cut(s)	118, 148
DdeI	CTNAG	3 cut(s)	107, 126, 342
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	151
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	93, 194, 372
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	192
FauI	CCCGC	2 cut(s)	129, 317
Fnu4HI	GCNGC	3 cut(s)	51, 134, 322
FokI	GGATG	3 cut(s)	43, 209, 340
Fsp4HI	GCNGC	3 cut(s)	51, 134, 322
FspBI	CTAG	2 cut(s)	144, 353
GluI	GCNGC	3 cut(s)	51, 134, 322
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	54, 251
Hpy188I	TCNGA	2 cut(s)	315, 389
Hpy99I	CGWCG	3 cut(s)	32, 38, 175
HpyCH4III	ACNGT	2 cut(s)	76, 122
HpyCH4IV	ACGT	2 cut(s)	27, 250
HpyCH4V	TGCA	2 cut(s)	50, 82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 112
HpyF3I	CTNAG	3 cut(s)	107, 126, 342
HpySE526I	ACGT	2 cut(s)	27, 250
Hsp92II	CATG	1 cut(s)	196
KpnI	GGTACC	2 cut(s)	121, 151
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	4, 165, 228, 329, 346
Lsp1109I	GCAGC	2 cut(s)	62, 145
MaeI	CTAG	2 cut(s)	144, 353
MaeII	ACGT	2 cut(s)	27, 250
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	7, 153
MluCI	AATT	2 cut(s)	274, 284
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	234, 293
MnlI	CCTC	6 cut(s)	70, 175, 178, 293, 327, 331
MseI	TTAA	3 cut(s)	263, 273, 348
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	152, 153
MwoI	GCNNNNNNNGC	2 cut(s)	50, 112
NciI	CCSGG	2 cut(s)	152, 153
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	23, 119, 149
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	52, 135, 323
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	23, 119, 149
PspPI	GGNCC	2 cut(s)	22, 363
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	119, 149
RsaNI	GTAC	2 cut(s)	118, 148
SaqAI	TTAA	3 cut(s)	263, 273, 348
SatI	GCNGC	3 cut(s)	51, 134, 322
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	22, 363
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	152, 153
SetI	ASST	8 cut(s)	30, 46, 55, 108, 149, 253, 348, 354
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	22
SmaI	CCCGGG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	274, 284
SsiI	CCGC	5 cut(s)	65, 115, 136, 321, 324
SspMI	CTAG	2 cut(s)	144, 353
StyD4I	CCNGG	2 cut(s)	150, 151
TaaI	ACNGT	2 cut(s)	76, 122
TaiI	ACGT	2 cut(s)	30, 253
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	274, 284
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	263, 273, 348
Tru9I	TTAA	3 cut(s)	263, 273, 348
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	2 cut(s)	50, 133
TspDTI	ATGAA	3 cut(s)	176, 213, 296
TspMI	CCCGGG	1 cut(s)	151
TspRI	CASTG	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	151
XspI	CTAG	2 cut(s)	144, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.